Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000680.1

Orthogroup ID

OG0003084

Physical Location & Seq

Genomic Coordinates Reverse (-)

107646 .. 108053

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000680.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgattacaaacacaataatagttgttctcttcagtacagtggtctttggctttctgacgaagccacttataagttatctgcttccccatgttggaactaagcccatcagtcgcaacgtatcaaaggacgttggggaggacttaaacctgcctctgctctccttcgatgaatctactgctaccaatataagtcgtgcaaaggataatttgtctatgttgatggagaggcctgtgtacgcgatacattcttactggaggaggttcgatgacgcctatatgagacccctatttggggggccggccagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0034220 GO:0035725 GO:0042592 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

102

Amino Acids

11.48

Weight (kDa)

8.08

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55470
fragaria_vesca	FvH4_3g30310 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300
malus_domestica	MD04G1209700.v1.1 MD11G1207200.v1.1 MD12G1224200.v1.1
prunus_persica	Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.6G330600_v2.0.a1
pyrus_communis	pycom04g18580 pycom12g20970
rosa_chinensis	RchiOBHm_Chr3g0454041 RchiOBHm_Chr5g0056181
rosa_laevigata	RLG00000025487 RLG00000035061
rosa_multiflora	Rmu_sc0000680.1_g000026
rosa_roxburghii	Rroxscaffold_1G00024110 Rroxscaffold_6G00430830
rosa_rugosa	Rorug02G0652500 Rorug05G0297800
rosa_samantha	Rh3AG055200 Rh3BG056800 Rh3CG056000 Rh3DG057300 Rh5AG369000 Rh5BG380000 Rh5CG402800 Rh5DG393000
rosa_wichuraiana	Rw0G004440 Rw0G012680 Rw3G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	156
AccII	CGCG	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	37, 236
AfiI	CCNNNNNNNGG	4 cut(s)	92, 290, 291, 292
Alw26I	GTCTC	1 cut(s)	274
AoxI	GGCC	3 cut(s)	227, 296, 300
AspS9I	GGNCC	1 cut(s)	296
BccI	CCATC	2 cut(s)	113, 214
BcoDI	GTCTC	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 290, 291, 292
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	2 cut(s)	257, 303
BseLI	CCNNNNNNNGG	4 cut(s)	92, 290, 291, 292
BseNI	ACTGG	2 cut(s)	257, 303
BseRI	GAGGAG	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	3 cut(s)	229, 298, 302
BsiSI	CCGG	1 cut(s)	299
BslI	CCNNNNNNNGG	4 cut(s)	92, 290, 291, 292
BsmAI	GTCTC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	229, 298, 302
Bso31I	GGTCTC	1 cut(s)	274
BspANI	GGCC	3 cut(s)	229, 298, 302
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	2 cut(s)	257, 303
BssAI	RCCGGY	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	239
BstMAI	GTCTC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	239
BsuRI	GGCC	3 cut(s)	229, 298, 302
BtsIMutI	CAGTG	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	36, 235
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	6 cut(s)	51, 64, 103, 229, 298, 302
CviKI_1	RGCY	6 cut(s)	51, 64, 103, 229, 298, 302
CviQI	GTAC	2 cut(s)	36, 235
DdeI	CTNAG	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	16
FaeI	CATG	1 cut(s)	92
FaiI	YATR	6 cut(s)	71, 90, 188, 215, 276, 278
FatI	CATG	1 cut(s)	88
FseI	GGCCGGCC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	229, 298, 302
HapII	CCGG	1 cut(s)	299
HgaI	GACGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	117, 129
HpyCH4V	TGCA	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	2 cut(s)	117, 129
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	92
KroI	GCCGGC	1 cut(s)	298
KroNI	GCCGGC	1 cut(s)	300
LpnPI	CCDG	3 cut(s)	161, 238, 243
MaeII	ACGT	2 cut(s)	117, 129
MboII	GAAGA	1 cut(s)	22
MluCI	AATT	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	5 cut(s)	130, 162, 219, 249, 252
MroNI	GCCGGC	1 cut(s)	298
MseI	TTAA	1 cut(s)	143
MspI	CCGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	239
NaeI	GCCGGC	1 cut(s)	300
NgoMIV	GCCGGC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	297
PceI	AGGCCT	1 cut(s)	229
PdiI	GCCGGC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	170
PsiI	TTATAA	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	296
RigI	GGCCGGCC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	37, 236
RsaNI	GTAC	2 cut(s)	36, 235
SaqAI	TTAA	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	296
SetI	ASST	4 cut(s)	120, 132, 150, 263
SgeI	CNNG	6 cut(s)	101, 160, 206, 242, 250, 265
Sse9I	AATT	1 cut(s)	205
SseBI	AGGCCT	1 cut(s)	229
StuI	AGGCCT	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	120, 132
TaqI	TCGA	2 cut(s)	165, 264
TasI	AATT	1 cut(s)	205
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.