Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003084

Physical Location & Seq

Genomic Coordinates Forward (+)

29459929 .. 29464117

Gene Structure 4189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1209700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGCTCATCAACTACCATTCTACCATTCTTCCCTCCAATTTTTTTAAGTCCATACCGACCTCCTATTCAATGACAACAAGAAGCCTCAGCACTCCAAGAAACTTCATTTATTTTTCATGGTCCAAAAACTCCAAACCATCTCAGCACTGTCCTCTCGGCTCCGATTCGGATCGACTTCAAATCCGACCAGGTGAATGCCAAAGTCAGATACACAAAAACCCAAAGAAAATGGCAGCTCTAGAAACCATACGGTCTCAGTTGCCACTTCAAGATTCCTCATTTCTCAGCACCAGCACTGTCATTGCACTCACTGTCTTCTTCACACTCCTCTGTGTTTGTATCATTATCGGTCATTTGCTCGAAGAGAACCGCTGGGCGAATGAATCGATCACGGCCCTTCTCTTGGGTTTGGTTGCTGGAGTGGTGGTGTTGCTGGTGACAGGGTTCGAAAGCTCGAAGATTTTGATCTTTAGCGAGGACTTGTTCTTTCTGTATCTACTGCCTCCAATCATTTTCAATGCTGGTTTCCAGGTCAAGAAAAAGCAGTTTTTCAAGAACTTCACCACAATTTTGTTGTTTGGAATCGTCGGTACAGTAATTTCTTTCTGCCTCATATCACTAGGTGCCTATTTACTTTTCAATAGATTCGGTTTCACAACTCTGACCACTAAAGACTTCCTAGCGATCGGTGCCATATTCTCAGCAACTGATTCAGTTTGTACATTGCAGGTTCTAAATCAAGATGAGACACCGTTTCTGTACAGTGTCGTGTTTGGGGAGGGAGTAGTGAATGATGCTACCTCCATTGTGCTTTTCAACGCAGTACAATCCCTAGATGTCAGCAACGTTGACGCAGCTACAGCGTTGACCTTGTTGGGGAATTTTCTTTACCTCTTCTTCACCAGTACTCTTCTTGGTATAGCAGCCGGTCTGATGAGCGCTTTTATCATAAAAACGCTTTACTTTGGAAGGCATTCTACAGATCGTGAAGTTGCGCTGATGATTCTTATGGCTTATTTGTCATACATGTTGGCCGAGCTTCTGAGTCTCAGTGGAATTTTGACGGTGTTTTTCTGCGGCATAGTTATGTCACATTATACATGGCACAACGTTACAGAAAGCTCAAGGGTAACAACCAAGCATGCATTTGCAACATTGTCATTCATTGCAGAAACCTTTATATTCCTTTATGTTGGCATGGATGCCTTGGACATTGACAAATGGAAAGCCAGCAATGCAAGTCCAGGGACTTCTGTTGGTGTCAGTTCAATGCTGTTTGGACTCGTATTAGTCGGAAGGGCAGCATTTGTCTTCCCGATTGCAAACATCAAAAACTGTTTTCAGAAAAGAGAGGGTACGAAAATCGAGTTCAAAAACCAGTTTATAATGTGGTGGGCAGGCCTAATGAGGGGTGCAGTCACCATTGCTTTGTCATACAACCAATTTGCAGACACCACCGAATCAACATCAACGCAAGATAGTTCTTTGATGATTACCAGTACCATCATTGTTGTTCTCTTCAGCACAGTGGTATTTGGCTCCATCACAAAGCCATTAATCTCAGCTCTGATACAGCCACATGCAAAAGCAAACATTTCAGATGCGACTGATATGCCAAGTCTAGAAGACTTGAGGGTACTTTTCCTGGAAGCCGGCGAGCCAAGCGAGGGAGGCAACGGTGAGCCAAGTGAGAGAGGCAACGGTGAGCCAATCCGAAAACCAAGCAGCTTAAGGTTGTTAATGACACATCCAGCTTCTACAACTGCTCACTACTTGTGGAGAAAGTTTGATGACAAGTTCATGAGACCGGTTTTTGGGGGACGGGGTTTCGTTCCATTTGTTCCTGGTTCACCAAGTGGTGCAGTAGAAGATCAAGCTGCAGAACATACTGAACATACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

635

Amino Acids

69.77

Weight (kDa)

6.51

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	121 - 520	2.3e-57	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55470
fragaria_vesca	FvH4_3g30310 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300
malus_domestica	MD04G1209700.v1.1 MD11G1207200.v1.1 MD12G1224200.v1.1
prunus_persica	Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.6G330600_v2.0.a1
pyrus_communis	pycom04g18580 pycom12g20970
rosa_chinensis	RchiOBHm_Chr3g0454041 RchiOBHm_Chr5g0056181
rosa_laevigata	RLG00000025487 RLG00000035061
rosa_multiflora	Rmu_sc0000680.1_g000026
rosa_roxburghii	Rroxscaffold_1G00024110 Rroxscaffold_6G00430830
rosa_rugosa	Rorug02G0652500 Rorug05G0297800
rosa_samantha	Rh3AG055200 Rh3BG056800 Rh3CG056000 Rh3DG057300 Rh5AG369000 Rh5BG380000 Rh5CG402800 Rh5DG393000
rosa_wichuraiana	Rw0G004440 Rw0G012680 Rw3G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1385
Acc36I	ACCTGC	1 cut(s)	718
AccB1I	GGYRCC	2 cut(s)	623, 689
AciI	CCGC	2 cut(s)	370, 1077
AclI	AACGTT	2 cut(s)	846, 1110
AclWI	GGATC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	1032
AcsI	RAATTY	2 cut(s)	880, 1056
AcuI	CTGAAG	1 cut(s)	1504
AdeI	CACNNNGTG	2 cut(s)	623, 1856
AfaI	GTAC	8 cut(s)	592, 721, 761, 825, 907, 1357, 1501, 1638
AfeI	AGCGCT	1 cut(s)	940
AfiI	CCNNNNNNNGG	5 cut(s)	403, 876, 1408, 1667, 1814
AflII	CTTAAG	1 cut(s)	1729
AflIII	ACRYGT	1 cut(s)	1026
AgeI	ACCGGT	1 cut(s)	1807
AgsI	TTSAA	9 cut(s)	69, 179, 269, 517, 553, 640, 817, 1269, 1372
AjnI	CCWGG	5 cut(s)	187, 528, 1243, 1644, 1843
AluBI	AGCT	9 cut(s)	236, 453, 857, 1039, 1122, 1565, 1728, 1754, 1877
AluI	AGCT	9 cut(s)	236, 453, 857, 1039, 1122, 1565, 1728, 1754, 1877
Alw26I	GTCTC	4 cut(s)	258, 740, 1052, 1798
AlwI	GGATC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	707
Aor51HI	AGCGCT	1 cut(s)	940
AoxI	GGCC	3 cut(s)	393, 1032, 1399
ApeKI	GCWGC	6 cut(s)	233, 854, 923, 1301, 1725, 1877
ApoI	RAATTY	2 cut(s)	880, 1056
AseI	ATTAAT	1 cut(s)	1556
AsiGI	ACCGGT	1 cut(s)	1807
Asp700I	GAANNNNTTC	1 cut(s)	973
AspLEI	GCGC	2 cut(s)	941, 997
AspS9I	GGNCC	2 cut(s)	120, 394
AsuHPI	GGTGA	8 cut(s)	203, 448, 553, 892, 1411, 1691, 1715, 1842
AsuII	TTCGAA	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	120
BanI	GGYRCC	2 cut(s)	623, 689
BarI	GAAGNNNNNNTAC	2 cut(s)	961, 993
BbsI	GAAGAC	3 cut(s)	307, 1303, 1632
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	6 cut(s)	245, 866, 935, 1313, 1737, 1864
BccI	CCATC	3 cut(s)	145, 1511, 1550
BceAI	ACGGC	1 cut(s)	408
BcgI	CGANNNNNNTGC	2 cut(s)	1594, 1628
BciT130I	CCWGG	5 cut(s)	189, 530, 1245, 1646, 1845
BcoDI	GTCTC	4 cut(s)	258, 740, 1052, 1798
BfaI	CTAG	5 cut(s)	239, 620, 680, 833, 1622
BfmI	CTRYAG	3 cut(s)	858, 978, 1878
BfoI	RGCGCY	1 cut(s)	942
BfrI	CTTAAG	1 cut(s)	1729
BfuAI	ACCTGC	1 cut(s)	718
BisI	GCNGC	7 cut(s)	234, 855, 924, 1078, 1302, 1726, 1878
BlsI	GCNGC	7 cut(s)	235, 856, 925, 1079, 1303, 1727, 1879
BmcAI	AGTACT	1 cut(s)	907
Bme1390I	CCNGG	5 cut(s)	189, 530, 1245, 1646, 1845
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	120, 394
BmiI	GGNNCC	4 cut(s)	160, 625, 691, 1540
BmrFI	CCNGG	5 cut(s)	189, 530, 1245, 1646, 1845
BmsI	GCATC	3 cut(s)	784, 1192, 1591
BpiI	GAAGAC	3 cut(s)	307, 1303, 1632
BpmI	CTGGAG	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	447
BpuEI	CTTGAG	2 cut(s)	1108, 1651
Bsa29I	ATCGAT	1 cut(s)	386
BsaBI	GATNNNNATC	2 cut(s)	168, 464
BsaI	GGTCTC	2 cut(s)	258, 1798
BsaJI	CCNNGG	2 cut(s)	1206, 1244
BsaWI	WCCGGW	1 cut(s)	1807
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	5 cut(s)	403, 876, 1408, 1667, 1814
Bse118I	RCCGGY	3 cut(s)	926, 1652, 1807
Bse1I	ACTGG	3 cut(s)	903, 1378, 1497
Bse3DI	GCAATG	5 cut(s)	300, 722, 1164, 1240, 1422
Bse8I	GATNNNNATC	2 cut(s)	168, 464
BseBI	CCWGG	5 cut(s)	189, 530, 1245, 1646, 1845
BseCI	ATCGAT	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	1206, 1244
BseGI	GGATG	2 cut(s)	1207, 1747
BseJI	GATNNNNATC	2 cut(s)	168, 464
BseLI	CCNNNNNNNGG	5 cut(s)	403, 876, 1408, 1667, 1814
BseMI	GCAATG	5 cut(s)	300, 722, 1164, 1240, 1422
BseMII	CTCAG	8 cut(s)	100, 155, 269, 298, 714, 1034, 1063, 1575
BseNI	ACTGG	3 cut(s)	903, 1378, 1497
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	6 cut(s)	245, 866, 935, 1313, 1737, 1864
BseYI	CCCAGC	1 cut(s)	372
BsgI	GTGCAG	2 cut(s)	1434, 1881
Bsh1285I	CGRYCG	1 cut(s)	687
BshFI	GGCC	3 cut(s)	395, 1034, 1401
BshNI	GGYRCC	2 cut(s)	623, 689
BshTI	ACCGGT	1 cut(s)	1807
BshVI	ATCGAT	1 cut(s)	386
BsiEI	CGRYCG	1 cut(s)	687
BsiSI	CCGG	3 cut(s)	927, 1653, 1808
BslFI	GGGAC	2 cut(s)	1261, 1833
BslI	CCNNNNNNNGG	5 cut(s)	403, 876, 1408, 1667, 1814
BsmAI	GTCTC	4 cut(s)	258, 740, 1052, 1798
BsmFI	GGGAC	2 cut(s)	1261, 1833
BsmI	GAATGC	2 cut(s)	200, 973
BsnI	GGCC	3 cut(s)	395, 1034, 1401
Bso31I	GGTCTC	2 cut(s)	258, 1798
Bsp119I	TTCGAA	1 cut(s)	447
Bsp1407I	TGTACA	2 cut(s)	719, 759
Bsp143I	GATC	6 cut(s)	169, 387, 465, 684, 982, 1870
BspACI	CCGC	2 cut(s)	370, 1077
BspANI	GGCC	3 cut(s)	395, 1034, 1401
BspCNI	CTCAG	8 cut(s)	99, 154, 268, 297, 713, 1035, 1062, 1574
BspDI	ATCGAT	1 cut(s)	386
BspHI	TCATGA	1 cut(s)	1800
BspLI	GGNNCC	4 cut(s)	160, 625, 691, 1540
BspMAI	CTGCAG	1 cut(s)	1882
BspMI	ACCTGC	1 cut(s)	718
BspPI	GGATC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	447
BspT107I	GGYRCC	2 cut(s)	623, 689
BspTI	CTTAAG	1 cut(s)	1729
BspTNI	GGTCTC	2 cut(s)	258, 1798
BsrDI	GCAATG	5 cut(s)	300, 722, 1164, 1240, 1422
BsrFI	RCCGGY	3 cut(s)	926, 1652, 1807
BsrGI	TGTACA	2 cut(s)	719, 759
BsrI	ACTGG	3 cut(s)	903, 1378, 1497
BssAI	RCCGGY	3 cut(s)	926, 1652, 1807
BssECI	CCNNGG	2 cut(s)	1206, 1244
BssMI	GATC	6 cut(s)	169, 387, 465, 684, 982, 1870
BssT1I	CCWWGG	1 cut(s)	1206
Bst2UI	CCWGG	5 cut(s)	189, 530, 1245, 1646, 1845
Bst6I	CTCTTC	4 cut(s)	357, 899, 915, 1523
BstAFI	CTTAAG	1 cut(s)	1729
BstAUI	TGTACA	2 cut(s)	719, 759
BstBI	TTCGAA	1 cut(s)	447
BstC8I	GCNNGC	5 cut(s)	1143, 1231, 1399, 1654, 1658
BstDEI	CTNAG	8 cut(s)	86, 141, 255, 284, 700, 1043, 1049, 1561
BstF5I	GGATG	2 cut(s)	1207, 1747
BstH2I	RGCGCY	1 cut(s)	942
BstHHI	GCGC	2 cut(s)	941, 997
BstKTI	GATC	6 cut(s)	172, 390, 468, 687, 985, 1873
BstMAI	GTCTC	4 cut(s)	258, 740, 1052, 1798
BstMBI	GATC	6 cut(s)	169, 387, 465, 684, 982, 1870
BstMCI	CGRYCG	1 cut(s)	687
BstMWI	GCNNNNNNNGC	5 cut(s)	689, 860, 1235, 1662, 1671
BstNI	CCWGG	5 cut(s)	189, 530, 1245, 1646, 1845
BstNSI	RCATGY	3 cut(s)	1030, 1145, 1583
BstSCI	CCNGG	5 cut(s)	187, 528, 1243, 1644, 1843
BstSFI	CTRYAG	3 cut(s)	858, 978, 1878
BstV1I	GCAGC	6 cut(s)	245, 866, 935, 1313, 1737, 1864
BstV2I	GAAGAC	3 cut(s)	307, 1303, 1632
Bsu15I	ATCGAT	1 cut(s)	386
BsuRI	GGCC	3 cut(s)	395, 1034, 1401
BsuTUI	ATCGAT	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	1207, 1747
BtsIMutI	CAGTG	6 cut(s)	145, 294, 309, 769, 1057, 1533
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	5 cut(s)	1143, 1231, 1399, 1654, 1658
CaiI	CAGNNNCTG	1 cut(s)	707
CciI	TCATGA	1 cut(s)	1800
CfoI	GCGC	2 cut(s)	941, 997
Cfr10I	RCCGGY	3 cut(s)	926, 1652, 1807
Cfr13I	GGNCC	2 cut(s)	120, 394
ClaI	ATCGAT	1 cut(s)	386
CseI	GACGC	1 cut(s)	860
CsiI	ACCWGGT	1 cut(s)	187
Csp6I	GTAC	8 cut(s)	591, 720, 760, 824, 906, 1356, 1500, 1637
CspAI	ACCGGT	1 cut(s)	1807
CviAII	CATG	7 cut(s)	117, 1027, 1101, 1142, 1198, 1580, 1801
CviQI	GTAC	8 cut(s)	591, 720, 760, 824, 906, 1356, 1500, 1637
DdeI	CTNAG	8 cut(s)	86, 141, 255, 284, 700, 1043, 1049, 1561
DpnI	GATC	6 cut(s)	171, 389, 467, 686, 984, 1872
DpnII	GATC	6 cut(s)	169, 387, 465, 684, 982, 1870
DraIII	CACNNNGTG	2 cut(s)	623, 1856
EaeI	YGGCCR	1 cut(s)	1032
Eam1104I	CTCTTC	4 cut(s)	357, 899, 915, 1523
EarI	CTCTTC	4 cut(s)	357, 899, 915, 1523
Eco130I	CCWWGG	1 cut(s)	1206
Eco147I	AGGCCT	1 cut(s)	1401
Eco31I	GGTCTC	2 cut(s)	258, 1798
Eco47I	GGWCC	1 cut(s)	120
Eco47III	AGCGCT	1 cut(s)	940
Eco57I	CTGAAG	1 cut(s)	1504
EcoRII	CCWGG	5 cut(s)	187, 528, 1243, 1644, 1843
EcoT14I	CCWWGG	1 cut(s)	1206
EcoT22I	ATGCAT	1 cut(s)	1147
ErhI	CCWWGG	1 cut(s)	1206
FaeI	CATG	7 cut(s)	120, 1030, 1104, 1145, 1201, 1583, 1804
FaqI	GGGAC	2 cut(s)	1261, 1833
FatI	CATG	7 cut(s)	116, 1026, 1100, 1141, 1197, 1579, 1800
Fnu4HI	GCNGC	7 cut(s)	234, 855, 924, 1078, 1302, 1726, 1878
FokI	GGATG	2 cut(s)	1214, 1734
Fsp4HI	GCNGC	7 cut(s)	234, 855, 924, 1078, 1302, 1726, 1878
FspBI	CTAG	5 cut(s)	239, 620, 680, 833, 1622
GlaI	GCGC	2 cut(s)	940, 996
GluI	GCNGC	7 cut(s)	234, 855, 924, 1078, 1302, 1726, 1878
GsaI	CCCAGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	942
HaeIII	GGCC	3 cut(s)	395, 1034, 1401
HapII	CCGG	3 cut(s)	927, 1653, 1808
HgaI	GACGC	1 cut(s)	860
HhaI	GCGC	2 cut(s)	941, 997
Hin1II	CATG	7 cut(s)	120, 1030, 1104, 1145, 1201, 1583, 1804
Hin6I	GCGC	2 cut(s)	939, 995
HinP1I	GCGC	2 cut(s)	939, 995
HincII	GTYRAC	2 cut(s)	850, 867
HindII	GTYRAC	2 cut(s)	850, 867
HpaII	CCGG	3 cut(s)	927, 1653, 1808
HphI	GGTGA	8 cut(s)	203, 448, 553, 892, 1411, 1691, 1715, 1842
Hpy166II	GTNNAC	3 cut(s)	850, 867, 1850
Hpy8I	GTNNAC	3 cut(s)	850, 867, 1850
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	3 cut(s)	407, 963, 1290
HpyCH4IV	ACGT	2 cut(s)	846, 1110
HpyF10VI	GCNNNNNNNGC	5 cut(s)	689, 860, 1235, 1662, 1671
HpyF3I	CTNAG	8 cut(s)	86, 141, 255, 284, 700, 1043, 1049, 1561
HpySE526I	ACGT	2 cut(s)	846, 1110
Hsp92II	CATG	7 cut(s)	120, 1030, 1104, 1145, 1201, 1583, 1804
HspAI	GCGC	2 cut(s)	939, 995
KroI	GCCGGC	1 cut(s)	1652
KroNI	GCCGGC	1 cut(s)	1654
Kzo9I	GATC	6 cut(s)	169, 387, 465, 684, 982, 1870
LmnI	GCTCC	2 cut(s)	164, 1544
Lsp1109I	GCAGC	6 cut(s)	245, 866, 935, 1313, 1737, 1864
LweI	GCATC	3 cut(s)	784, 1192, 1591
MabI	ACCWGGT	1 cut(s)	187
MaeI	CTAG	5 cut(s)	239, 620, 680, 833, 1622
MaeII	ACGT	2 cut(s)	846, 1110
MaeIII	GTNAC	5 cut(s)	436, 1089, 1111, 1129, 1417
MalI	GATC	6 cut(s)	171, 389, 467, 686, 984, 1872
MboI	GATC	6 cut(s)	169, 387, 465, 684, 982, 1870
MluCI	AATT	6 cut(s)	37, 567, 597, 880, 1056, 1442
MlyI	GAGTC	2 cut(s)	1054, 1275
MmeI	TCCRAC	2 cut(s)	208, 1273
Mph1103I	ATGCAT	1 cut(s)	1147
MroNI	GCCGGC	1 cut(s)	1652
MroXI	GAANNNNTTC	1 cut(s)	973
MseI	TTAA	4 cut(s)	45, 1556, 1730, 1739
MslI	CAYNNNNRTG	1 cut(s)	1085
MspA1I	CMGCKG	1 cut(s)	372
MspCI	CTTAAG	1 cut(s)	1729
MspI	CCGG	3 cut(s)	927, 1653, 1808
MspR9I	CCNGG	5 cut(s)	189, 530, 1245, 1646, 1845
Mva1269I	GAATGC	2 cut(s)	200, 973
MvaI	CCWGG	5 cut(s)	189, 530, 1245, 1646, 1845
MwoI	GCNNNNNNNGC	5 cut(s)	689, 860, 1235, 1662, 1671
NaeI	GCCGGC	1 cut(s)	1654
NdeII	GATC	6 cut(s)	169, 387, 465, 684, 982, 1870
NgoMIV	GCCGGC	1 cut(s)	1652
NlaIII	CATG	7 cut(s)	120, 1030, 1104, 1145, 1201, 1583, 1804
NlaIV	GGNNCC	4 cut(s)	160, 625, 691, 1540
NmeAIII	GCCGAG	2 cut(s)	135, 1060
NmuCI	GTSAC	3 cut(s)	436, 1089, 1417
NsiI	ATGCAT	1 cut(s)	1147
NspI	RCATGY	3 cut(s)	1030, 1145, 1583
NspV	TTCGAA	1 cut(s)	447
PaeI	GCATGC	1 cut(s)	1145
PagI	TCATGA	1 cut(s)	1800
PceI	AGGCCT	1 cut(s)	1401
PciI	ACATGT	1 cut(s)	1026
PctI	GAATGC	2 cut(s)	200, 973
PdiI	GCCGGC	1 cut(s)	1654
PdmI	GAANNNNTTC	1 cut(s)	973
PfeI	GAWTC	8 cut(s)	164, 272, 383, 582, 645, 710, 1003, 1460
PfoI	TCCNGGA	1 cut(s)	1644
PinAI	ACCGGT	1 cut(s)	1807
PkrI	GCNGC	7 cut(s)	235, 856, 925, 1079, 1303, 1727, 1879
Ple19I	CGATCG	1 cut(s)	687
PleI	GAGTC	2 cut(s)	1053, 1275
PpsI	GAGTC	2 cut(s)	1053, 1275
PscI	ACATGT	1 cut(s)	1026
PshBI	ATTAAT	1 cut(s)	1556
PsiI	TTATAA	1 cut(s)	1385
Psp1406I	AACGTT	2 cut(s)	846, 1110
Psp6I	CCWGG	5 cut(s)	187, 528, 1243, 1644, 1843
PspFI	CCCAGC	1 cut(s)	372
PspGI	CCWGG	5 cut(s)	187, 528, 1243, 1644, 1843
PspN4I	GGNNCC	4 cut(s)	160, 625, 691, 1540
PspPI	GGNCC	2 cut(s)	120, 394
PstI	CTGCAG	1 cut(s)	1882
PstNI	CAGNNNCTG	1 cut(s)	707
PvuI	CGATCG	1 cut(s)	687
RsaI	GTAC	8 cut(s)	592, 721, 761, 825, 907, 1357, 1501, 1638
RsaNI	GTAC	8 cut(s)	591, 720, 760, 824, 906, 1356, 1500, 1637
RseI	CAYNNNNRTG	1 cut(s)	1085
SaqAI	TTAA	4 cut(s)	45, 1556, 1730, 1739
SatI	GCNGC	7 cut(s)	234, 855, 924, 1078, 1302, 1726, 1878
Sau3AI	GATC	6 cut(s)	169, 387, 465, 684, 982, 1870
Sau96I	GGNCC	2 cut(s)	120, 394
ScaI	AGTACT	1 cut(s)	907
SchI	GAGTC	2 cut(s)	1054, 1275
ScrFI	CCNGG	5 cut(s)	189, 530, 1245, 1646, 1845
SexAI	ACCWGGT	1 cut(s)	187
SfaNI	GCATC	3 cut(s)	784, 1192, 1591
SfcI	CTRYAG	3 cut(s)	858, 978, 1878
SfuI	TTCGAA	1 cut(s)	447
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	1085
SmlI	CTYRAG	3 cut(s)	1123, 1630, 1729
SmoI	CTYRAG	3 cut(s)	1123, 1630, 1729
SphI	GCATGC	1 cut(s)	1145
Sse9I	AATT	6 cut(s)	37, 567, 597, 880, 1056, 1442
SseBI	AGGCCT	1 cut(s)	1401
SsiI	CCGC	2 cut(s)	370, 1077
SspMI	CTAG	5 cut(s)	239, 620, 680, 833, 1622
StuI	AGGCCT	1 cut(s)	1401
StyD4I	CCNGG	5 cut(s)	187, 528, 1243, 1644, 1843
StyI	CCWWGG	1 cut(s)	1206
TaiI	ACGT	2 cut(s)	849, 1113
TaqI	TCGA	6 cut(s)	172, 360, 386, 447, 455, 1365
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	6 cut(s)	37, 567, 597, 880, 1056, 1442
TatI	WGTACW	4 cut(s)	719, 759, 823, 905
TauI	GCSGC	1 cut(s)	1080
TfiI	GAWTC	8 cut(s)	164, 272, 383, 582, 645, 710, 1003, 1460
Tru1I	TTAA	4 cut(s)	45, 1556, 1730, 1739
Tru9I	TTAA	4 cut(s)	45, 1556, 1730, 1739
TscAI	CASTG	6 cut(s)	152, 301, 316, 769, 1057, 1533
TseFI	GTSAC	3 cut(s)	436, 1089, 1417
TseI	GCWGC	6 cut(s)	233, 854, 923, 1301, 1725, 1877
Tsp45I	GTSAC	3 cut(s)	436, 1089, 1417
TspDTI	ATGAA	5 cut(s)	94, 105, 396, 1153, 1789
TspRI	CASTG	6 cut(s)	152, 301, 316, 769, 1057, 1533
Vha464I	CTTAAG	1 cut(s)	1729
VpaK11BI	GGWCC	1 cut(s)	120
VspI	ATTAAT	1 cut(s)	1556
XapI	RAATTY	2 cut(s)	880, 1056
XbaI	TCTAGA	2 cut(s)	238, 1621
XceI	RCATGY	3 cut(s)	1030, 1145, 1583
XmnI	GAANNNNTTC	1 cut(s)	973
XspI	CTAG	5 cut(s)	239, 620, 680, 833, 1622
ZrmI	AGTACT	1 cut(s)	907
Zsp2I	ATGCAT	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.