Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003084

Physical Location & Seq

Genomic Coordinates Forward (+)

20571665 .. 20574962

Gene Structure 3298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAATTTCCGTTTCCAGGTCAAGAAAAAGCAGTTTTTCAAGAACTTCACCACAATTTTGTTGTTTGGAATCGTCGGTACAGTAATTTCTTTCTGCCTCATATCACTAGCGATCGGTGCCATATTCTCAGCAACTGATTCAGTTTGTACATTGCAGGTTCTAAATCAAGATGAGACACCGTTTCTTTACAGTGTTGTGTTTGGGGAGGGAGTAGTGAATGATGCTACCTCCATTGTGCTTTTCAACGCAGTACAATCGCTAGATGTCAGCAACGTTGACGCTTTTACAGCGTTGACCTTGTTGGGGAATTTTCTTTACCTCTTCTTCACCAGCACTCTTCTTGGTATAGCACTTATGAGTCTCAGTGGAATTTTGACGGTGTTTTTCTGCGGCATAGTTATGTCACATTATACATGGCACAACGTTACAGAAAGCTCAAGGGTAACAACCAAGCATGCATTTGCAACATTGTCGTTCATTGCAGAAACCTTTATATTCCTTTATGTTGGCATGGATGCCTTGGACATTGACAAATGGAAAGCCAGCAATGCAAGTCCAGGGACTTCAGTTGGTGTCAGTTCAATGCTGTTTGGACTTGTATTAGTCGGAAGGGCAGCATTTGTCTTCCCGATTGCAAACATCAAAAACTGTTTTATGAAAAGAGAGGGTAGGAAAATCGAGTTCAAAAACCAGTTTATAATGTGGTGGGCAGGCCTAATGAGGGGTGCAGTCACCATTGCTTTGTCATACAACCAATTTGCAGACACCACCGAATCAACATCAACGCAAGATGGTTCTTTGATGATTACCAGTACCATCATTGTTGTTCTCTTCAGCACAGTGGTATTTGGCTCCATCACAAAGCCATTAATCTCCGCTCTGATACAGCCACATGCAAAAGCAAACATTTCAGATGCGACTGATATGCCAAGTCTAGAAGACTTGAGGGTACTTTTCCTGGAAGCCGGCCAGCCAAGCGAGGGAGGCAACGGTGAACCAAGTGAGAGAGGCAACAGTGAGCCAATCCGAAAACCAAGCAGCTTAAGGTTGTTAATGACACATCCAGCTTCCACAACTGCTCACTACTTGTGGAGAAAGTTTGATGACAAGTTCATGAGACCAGTTTTTGGGGGACGGGGTTTCGTTCCATTTGTTCCTGGTTCACCAACTGGTGCAGCAGAAGATCAAGCTGCAGAACATACTGAACATACTGAACATACTGAACATACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

412

Amino Acids

45.03

Weight (kDa)

6.06

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	8 - 117	2.4e-13	Sodium/hydrogen exchanger, transmembrane
Na_H_Exchanger	PF00999	118 - 291	3.8e-19	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55470
fragaria_vesca	FvH4_3g30310 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300
malus_domestica	MD04G1209700.v1.1 MD11G1207200.v1.1 MD12G1224200.v1.1
prunus_persica	Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.6G330600_v2.0.a1
pyrus_communis	pycom04g18580 pycom12g20970
rosa_chinensis	RchiOBHm_Chr3g0454041 RchiOBHm_Chr5g0056181
rosa_laevigata	RLG00000025487 RLG00000035061
rosa_multiflora	Rmu_sc0000680.1_g000026
rosa_roxburghii	Rroxscaffold_1G00024110 Rroxscaffold_6G00430830
rosa_rugosa	Rorug02G0652500 Rorug05G0297800
rosa_samantha	Rh3AG055200 Rh3BG056800 Rh3CG056000 Rh3DG057300 Rh5AG369000 Rh5BG380000 Rh5CG402800 Rh5DG393000
rosa_wichuraiana	Rw0G004440 Rw0G012680 Rw3G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	1127
AccBSI	CCGCTC	1 cut(s)	878
AciI	CCGC	2 cut(s)	390, 876
AclI	AACGTT	2 cut(s)	273, 423
AcoI	YGGCCR	1 cut(s)	967
AcsI	RAATTY	3 cut(s)	4, 307, 369
AcuI	CTGAAG	2 cut(s)	549, 817
AfaI	GTAC	5 cut(s)	79, 148, 252, 814, 951
AfiI	CCNNNNNNNGG	5 cut(s)	16, 303, 721, 980, 1127
AflII	CTTAAG	1 cut(s)	1042
AgsI	TTSAA	4 cut(s)	40, 244, 582, 685
AjnI	CCWGG	4 cut(s)	15, 556, 957, 1156
AluBI	AGCT	4 cut(s)	435, 1041, 1067, 1190
AluI	AGCT	4 cut(s)	435, 1041, 1067, 1190
Alw26I	GTCTC	3 cut(s)	167, 365, 1111
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	712, 967
ApeKI	GCWGC	4 cut(s)	614, 1038, 1175, 1190
ApoI	RAATTY	3 cut(s)	4, 307, 369
AseI	ATTAAT	1 cut(s)	869
AsuHPI	GGTGA	5 cut(s)	40, 319, 724, 1004, 1155
BanI	GGYRCC	1 cut(s)	116
BbsI	GAAGAC	2 cut(s)	616, 945
BbvI	GCAGC	4 cut(s)	626, 1050, 1177, 1187
BccI	CCATC	3 cut(s)	785, 824, 863
BcgI	CGANNNNNNTGC	6 cut(s)	237, 271, 453, 487, 907, 941
BciT130I	CCWGG	4 cut(s)	17, 558, 959, 1158
BcoDI	GTCTC	3 cut(s)	167, 365, 1111
BfaI	CTAG	3 cut(s)	107, 260, 935
BfmI	CTRYAG	1 cut(s)	1191
BfrI	CTTAAG	1 cut(s)	1042
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	5 cut(s)	391, 615, 1039, 1176, 1191
BlsI	GCNGC	5 cut(s)	392, 616, 1040, 1177, 1192
Bme1390I	CCNGG	4 cut(s)	17, 558, 959, 1158
BmiI	GGNNCC	2 cut(s)	118, 853
BmrFI	CCNGG	4 cut(s)	17, 558, 959, 1158
BmsI	GCATC	3 cut(s)	211, 505, 904
BpiI	GAAGAC	2 cut(s)	616, 945
BpuEI	CTTGAG	2 cut(s)	421, 964
BsaI	GGTCTC	1 cut(s)	1111
BsaJI	CCNNGG	2 cut(s)	519, 557
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 303, 721, 980, 1127
Bse118I	RCCGGY	1 cut(s)	965
Bse1I	ACTGG	4 cut(s)	691, 810, 1121, 1174
Bse3DI	GCAATG	4 cut(s)	149, 477, 553, 735
BseBI	CCWGG	4 cut(s)	17, 558, 959, 1158
BseDI	CCNNGG	2 cut(s)	519, 557
BseGI	GGATG	2 cut(s)	520, 1060
BseLI	CCNNNNNNNGG	5 cut(s)	16, 303, 721, 980, 1127
BseMI	GCAATG	4 cut(s)	149, 477, 553, 735
BseMII	CTCAG	2 cut(s)	141, 376
BseNI	ACTGG	4 cut(s)	691, 810, 1121, 1174
BseXI	GCAGC	4 cut(s)	626, 1050, 1177, 1187
BsgI	GTGCAG	2 cut(s)	747, 1194
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	714, 969
BshNI	GGYRCC	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	966
BslFI	GGGAC	2 cut(s)	574, 1146
BslI	CCNNNNNNNGG	5 cut(s)	16, 303, 721, 980, 1127
BsmAI	GTCTC	3 cut(s)	167, 365, 1111
BsmFI	GGGAC	2 cut(s)	574, 1146
BsnI	GGCC	2 cut(s)	714, 969
Bso31I	GGTCTC	1 cut(s)	1111
Bsp1407I	TGTACA	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	111, 1183
BspACI	CCGC	2 cut(s)	390, 876
BspANI	GGCC	2 cut(s)	714, 969
BspCNI	CTCAG	2 cut(s)	140, 375
BspHI	TCATGA	1 cut(s)	1113
BspLI	GGNNCC	2 cut(s)	118, 853
BspMAI	CTGCAG	1 cut(s)	1195
BspMI	ACCTGC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	116
BspTI	CTTAAG	1 cut(s)	1042
BspTNI	GGTCTC	1 cut(s)	1111
BsrBI	CCGCTC	1 cut(s)	878
BsrDI	GCAATG	4 cut(s)	149, 477, 553, 735
BsrFI	RCCGGY	1 cut(s)	965
BsrGI	TGTACA	1 cut(s)	146
BsrI	ACTGG	4 cut(s)	691, 810, 1121, 1174
BssAI	RCCGGY	1 cut(s)	965
BssECI	CCNNGG	2 cut(s)	519, 557
BssMI	GATC	2 cut(s)	111, 1183
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	4 cut(s)	17, 558, 959, 1158
Bst4CI	ACNGT	8 cut(s)	82, 180, 191, 379, 650, 841, 992, 1016
Bst6I	CTCTTC	3 cut(s)	326, 342, 836
BstAFI	CTTAAG	1 cut(s)	1042
BstAUI	TGTACA	1 cut(s)	146
BstC8I	GCNNGC	5 cut(s)	456, 544, 712, 967, 971
BstDEI	CTNAG	2 cut(s)	127, 362
BstF5I	GGATG	2 cut(s)	520, 1060
BstKTI	GATC	2 cut(s)	114, 1186
BstMAI	GTCTC	3 cut(s)	167, 365, 1111
BstMBI	GATC	2 cut(s)	111, 1183
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 287, 548, 975, 984
BstNI	CCWGG	4 cut(s)	17, 558, 959, 1158
BstNSI	RCATGY	2 cut(s)	458, 896
BstSCI	CCNGG	4 cut(s)	15, 556, 957, 1156
BstSFI	CTRYAG	1 cut(s)	1191
BstV1I	GCAGC	4 cut(s)	626, 1050, 1177, 1187
BstV2I	GAAGAC	2 cut(s)	616, 945
BsuRI	GGCC	2 cut(s)	714, 969
BtsCI	GGATG	2 cut(s)	520, 1060
BtsIMutI	CAGTG	4 cut(s)	196, 370, 846, 1021
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	5 cut(s)	456, 544, 712, 967, 971
CaiI	CAGNNNCTG	1 cut(s)	134
CciI	TCATGA	1 cut(s)	1113
Cfr10I	RCCGGY	1 cut(s)	965
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	5 cut(s)	78, 147, 251, 813, 950
CviAII	CATG	5 cut(s)	414, 455, 511, 893, 1114
CviQI	GTAC	5 cut(s)	78, 147, 251, 813, 950
DdeI	CTNAG	2 cut(s)	127, 362
DpnI	GATC	2 cut(s)	113, 1185
DpnII	GATC	2 cut(s)	111, 1183
EaeI	YGGCCR	1 cut(s)	967
Eam1104I	CTCTTC	3 cut(s)	326, 342, 836
EarI	CTCTTC	3 cut(s)	326, 342, 836
Eco130I	CCWWGG	1 cut(s)	519
Eco147I	AGGCCT	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	1111
Eco57I	CTGAAG	2 cut(s)	549, 817
EcoRII	CCWGG	4 cut(s)	15, 556, 957, 1156
EcoT14I	CCWWGG	1 cut(s)	519
EcoT22I	ATGCAT	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	5 cut(s)	417, 458, 514, 896, 1117
FaqI	GGGAC	2 cut(s)	574, 1146
FatI	CATG	5 cut(s)	413, 454, 510, 892, 1113
Fnu4HI	GCNGC	5 cut(s)	391, 615, 1039, 1176, 1191
FokI	GGATG	2 cut(s)	527, 1047
Fsp4HI	GCNGC	5 cut(s)	391, 615, 1039, 1176, 1191
FspBI	CTAG	3 cut(s)	107, 260, 935
GluI	GCNGC	5 cut(s)	391, 615, 1039, 1176, 1191
HaeIII	GGCC	2 cut(s)	714, 969
HapII	CCGG	1 cut(s)	966
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	5 cut(s)	417, 458, 514, 896, 1117
HincII	GTYRAC	2 cut(s)	277, 294
HindII	GTYRAC	2 cut(s)	277, 294
HinfI	GANTC	4 cut(s)	69, 137, 358, 773
HpaII	CCGG	1 cut(s)	966
HphI	GGTGA	5 cut(s)	40, 319, 724, 1004, 1155
Hpy166II	GTNNAC	4 cut(s)	277, 294, 995, 1163
Hpy188I	TCNGA	4 cut(s)	608, 882, 913, 1028
Hpy188III	TCNNGA	7 cut(s)	22, 40, 167, 628, 935, 1114, 1233
Hpy8I	GTNNAC	4 cut(s)	277, 294, 995, 1163
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	603
HpyCH4III	ACNGT	8 cut(s)	82, 180, 191, 379, 650, 841, 992, 1016
HpyCH4IV	ACGT	2 cut(s)	273, 423
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 287, 548, 975, 984
HpyF3I	CTNAG	2 cut(s)	127, 362
HpySE526I	ACGT	2 cut(s)	273, 423
Hsp92II	CATG	5 cut(s)	417, 458, 514, 896, 1117
KroI	GCCGGC	1 cut(s)	965
KroNI	GCCGGC	1 cut(s)	967
Kzo9I	GATC	2 cut(s)	111, 1183
LmnI	GCTCC	1 cut(s)	857
Lsp1109I	GCAGC	4 cut(s)	626, 1050, 1177, 1187
LweI	GCATC	3 cut(s)	211, 505, 904
MaeI	CTAG	3 cut(s)	107, 260, 935
MaeII	ACGT	2 cut(s)	273, 423
MaeIII	GTNAC	4 cut(s)	402, 424, 442, 730
MalI	GATC	2 cut(s)	113, 1185
MbiI	CCGCTC	1 cut(s)	878
MboI	GATC	2 cut(s)	111, 1183
MboII	GAAGA	7 cut(s)	313, 316, 329, 616, 823, 950, 1193
MluCI	AATT	6 cut(s)	4, 54, 84, 307, 369, 755
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	586
Mph1103I	ATGCAT	1 cut(s)	460
MroNI	GCCGGC	1 cut(s)	965
MseI	TTAA	3 cut(s)	869, 1043, 1052
MslI	CAYNNNNRTG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	1042
MspI	CCGG	1 cut(s)	966
MspR9I	CCNGG	4 cut(s)	17, 558, 959, 1158
MvaI	CCWGG	4 cut(s)	17, 558, 959, 1158
MwoI	GCNNNNNNNGC	5 cut(s)	116, 287, 548, 975, 984
NaeI	GCCGGC	1 cut(s)	967
NdeII	GATC	2 cut(s)	111, 1183
NgoMIV	GCCGGC	1 cut(s)	965
NlaIII	CATG	5 cut(s)	417, 458, 514, 896, 1117
NlaIV	GGNNCC	2 cut(s)	118, 853
NmuCI	GTSAC	2 cut(s)	402, 730
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	2 cut(s)	458, 896
PaeI	GCATGC	1 cut(s)	458
PagI	TCATGA	1 cut(s)	1113
PceI	AGGCCT	1 cut(s)	714
PdiI	GCCGGC	1 cut(s)	967
PfeI	GAWTC	3 cut(s)	69, 137, 773
PflMI	CCANNNNNTGG	1 cut(s)	1127
PfoI	TCCNGGA	1 cut(s)	957
PkrI	GCNGC	5 cut(s)	392, 616, 1040, 1177, 1192
Ple19I	CGATCG	1 cut(s)	114
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	869
PsiI	TTATAA	1 cut(s)	698
Psp1406I	AACGTT	2 cut(s)	273, 423
Psp6I	CCWGG	4 cut(s)	15, 556, 957, 1156
PspGI	CCWGG	4 cut(s)	15, 556, 957, 1156
PspN4I	GGNNCC	2 cut(s)	118, 853
PstI	CTGCAG	1 cut(s)	1195
PstNI	CAGNNNCTG	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	114
RsaI	GTAC	5 cut(s)	79, 148, 252, 814, 951
RsaNI	GTAC	5 cut(s)	78, 147, 251, 813, 950
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	3 cut(s)	869, 1043, 1052
SatI	GCNGC	5 cut(s)	391, 615, 1039, 1176, 1191
Sau3AI	GATC	2 cut(s)	111, 1183
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	4 cut(s)	17, 558, 959, 1158
SfaNI	GCATC	3 cut(s)	211, 505, 904
SfcI	CTRYAG	1 cut(s)	1191
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	3 cut(s)	436, 943, 1042
SmoI	CTYRAG	3 cut(s)	436, 943, 1042
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	6 cut(s)	4, 54, 84, 307, 369, 755
SseBI	AGGCCT	1 cut(s)	714
SsiI	CCGC	2 cut(s)	390, 876
SspMI	CTAG	3 cut(s)	107, 260, 935
StuI	AGGCCT	1 cut(s)	714
StyD4I	CCNGG	4 cut(s)	15, 556, 957, 1156
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	8 cut(s)	82, 180, 191, 379, 650, 841, 992, 1016
TaiI	ACGT	2 cut(s)	276, 426
TaqI	TCGA	1 cut(s)	678
TasI	AATT	6 cut(s)	4, 54, 84, 307, 369, 755
TatI	WGTACW	2 cut(s)	146, 250
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	3 cut(s)	69, 137, 773
Tru1I	TTAA	3 cut(s)	869, 1043, 1052
Tru9I	TTAA	3 cut(s)	869, 1043, 1052
TscAI	CASTG	4 cut(s)	196, 370, 846, 1021
TseFI	GTSAC	2 cut(s)	402, 730
TseI	GCWGC	4 cut(s)	614, 1038, 1175, 1190
Tsp45I	GTSAC	2 cut(s)	402, 730
TspDTI	ATGAA	4 cut(s)	17, 466, 671, 1102
TspRI	CASTG	4 cut(s)	196, 370, 846, 1021
Van91I	CCANNNNNTGG	1 cut(s)	1127
Vha464I	CTTAAG	1 cut(s)	1042
VspI	ATTAAT	1 cut(s)	869
XapI	RAATTY	3 cut(s)	4, 307, 369
XbaI	TCTAGA	1 cut(s)	934
XceI	RCATGY	2 cut(s)	458, 896
XspI	CTAG	3 cut(s)	107, 260, 935
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.