Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003084

Physical Location & Seq

Genomic Coordinates Reverse (-)

50915428 .. 50925692

Gene Structure 10265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGGCAGTTCTTGAAACCATTCAGAAACTCAAGGATACATTTCTTGACACCTCCACCATTATTGCACTCACCGTCTTCTTCACACTCCTCTGCCTCTGTATCATAATCGGTCATTTGTTGGAAGAGCATCGTTGGGCTAATGAGTCCATCACCGCCCTTCTTTTGGGTTTGGTTGCTGGACTAGTGGTGTTGCTGGTGACTCAGTTCGAGAGTTCACAAATTTTGGTCTTCAATGAGGACTTGTTCTTCCTCTATTTACTTCCTCCAATCATTTTCAATGCTGGTTTTCAGGTCAAGAAAAAGCAATTTTTCAAGAATTTCACAACAATTTTGCTGTTTGGTATAGTTGGTACAGTAATTTCTTTCTGCCTCATATCACTAGGTGCCTTTTTAGTTTTCCGTAGATTTGGTTTCGCAACTCTGACCATTCGAGATTACCTAGCTGTTGGTGCCATACTGTCAGCAACGGATTCAGTTTGTACATTGCAGGTTCTTAGTCAAGATGACACTCCCTTTCTCTACAGTGTCGTATTCGGGGAGGGAGTAGTGAATGATGCTACCTCTATTGTGCTCTTCAATGCAGTACAATCACTAGACGTGAGGAACGTCAGTGGTCTTACAGCATTGAAATTGTTAGGCACTTTTCTTTACCTCTTCTTCACCAGCACTCTTCTTGGTATAGCAGCTGGTCTTATGAGCGCTTTTATCATAAAAACGCTTTACTTTGGAAGGCATTCTACAGATCGTGAAGTTGCTCTCATGATTCTCATGGCTTATTTGTCATACATGTTGGCTGAGCTTTTGAATCTCAGTGGAATTTTGACAGTTTTCTTTTGTGGCATAGTAATGTCACATTACACATGGCACAATGTTACAGAAAGCTCAAGGATAACAACCAAGCATGCATTTGCAACAATGTCATTCATTTCAGAAACCTTTATATTCCTCTATGTTGGTATGGATGCCATGGACATTGACAAATGGAAAGCCAGCAAAGCAAGTCCAGGAACTTCAATTGGTGTCAGTTCGATTTTGTTTGCACTTGTATTAATCGGAAGGGCAGCATTCATATTCCCGATCGCAAACATTTCAAATTGCTGCAAGAAGAGAGAAGGCACTAAAATCAAATTCCGTCAACAGTTCATAATGTGGTGGGCAGGCCTAATGAGAGGTGCAGTTACTATTGCTTTGTCATACAACCAATTTGCAGAGTCCACGACGTCATCAGTGCAAGATAATGCACGGATGATCACCTCCACAATAATTGTTGTTCTATTCAGCACAGTGGTATTTGGCTCGATAACAAAGCCGTTAATTGAAGCTGTACTGCCGAGACATGCAAACCACAATATTTCGGATGCAACTGATAGTCCAAGTCTAGAAGACTTGAGGCTATTGTTCCTAGAAACCGGTGATCCAAGCGAAGAAGGCAACGGTCAGCCAAGTCGAAGGAAAAGTAGCTTTAGGTTATTGATGACTCATACGACTTATACTGTGCACCATTTTTGGAGAAAATTTGATGACAAGTTCATGAGACCGGTGTTTGGTGGACGGGGATTTGTTCCCTTCGTTCCTGGTTCACCAAGTAATGAAGAAGTACTACAGATTCATGCTTCTTGCGTTCTTAAAAGGAGCTCAAACACGATTCGTGCTCTCTTGCGTGTGACCCAGATTCAAGAATCTTCGTATCTGCTTGGATGCTCAAGGAGCTACGGAACTGGTATTTCAAATGTGGCCGAACTTAATAGCCGGAACATGTACTCAAGCTTATATAAGGGCAATGGAGCACTCCCTTGGACTTCTAGAAATGCTATGACGCTGCGTTCTGCAGTGGCTGTCGAGTTGCCAATCTTCTTGAATGATAAAAGGTTGCTATCCACACAAGTAAAAGCACCTGCCCAAGCAAGACAAATGGGAGCACTTAGAGTTTCCATGACAAGCCCAGGATTTATCTATGAGCCTTATGCACCTCGTGAAAAAGTTCCATTTTTCCAGAGATGGTTCACTAGAAGTGGCTGGAGAAGAACAAAAGAAGATATAATTTTAGAGCTTAAAAGTGCATATGCTATTAATAAATTAAGAAAATCGGGATATTCGAAGAATTTATTCTACAAAGAAGCAATCAATGTATACAAGGAGATAAATACTCTTCTGGCAACTGGAGACAAAAACACTTTAAGGAAAGCAGTTACTGAGAAAATGTACTCTGAACTAAAGAACGAAATAAAACAGAGAGAATCTATATGGACTATCTTCTTTGCCTTATCCCTTCTCTCCTCGTTACAGATTGGTGTTGATCCAAAAGATCTCGAAAAGGTGTTTATACAGCTTACACTTGAGTTTCTGTCAAAGCAGTGTTCAGGATTAAGTGCTCCCACTCACTATAGTTTAACATTTTGTGGCCATTCAACCTTGTCGGCAGAGCAGTATGAGTTGTGGGAGTTAGGTATCTGGCAAGAATATAAAGCATATGGAATGAGGAATACTAAGTTCGAAGCATATGACTCAAAGGGTTCTGTTGTTGCAGGAGATAAATCTAAGGAGGTTCTTGTCCGTGATATCTGGGTATTTGAAAAGTCTCTCTTCCATCCTAAATCTTTCTGGCGTCTTTGTGGGAGGATTACTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

876

Amino Acids

98.48

Weight (kDa)

9.25

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	38 - 440	2.4e-58	Sodium/hydrogen exchanger, transmembrane
Tim44	PF04280	686 - 747	1.2e-08	Tim44-like domain
Tim44	PF04280	834 - 872	3.7e-06	Tim44-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55470
fragaria_vesca	FvH4_3g30310 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300
malus_domestica	MD04G1209700.v1.1 MD11G1207200.v1.1 MD12G1224200.v1.1
prunus_persica	Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.6G330600_v2.0.a1
pyrus_communis	pycom04g18580 pycom12g20970
rosa_chinensis	RchiOBHm_Chr3g0454041 RchiOBHm_Chr5g0056181
rosa_laevigata	RLG00000025487 RLG00000035061
rosa_multiflora	Rmu_sc0000680.1_g000026
rosa_roxburghii	Rroxscaffold_1G00024110 Rroxscaffold_6G00430830
rosa_rugosa	Rorug02G0652500 Rorug05G0297800
rosa_samantha	Rh3AG055200 Rh3BG056800 Rh3CG056000 Rh3DG057300 Rh5AG369000 Rh5BG380000 Rh5CG402800 Rh5DG393000
rosa_wichuraiana	Rw0G004440 Rw0G012680 Rw3G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1903
AatII	GACGTC	1 cut(s)	1223
Acc36I	ACCTGC	2 cut(s)	478, 1903
AccB1I	GGYRCC	2 cut(s)	383, 449
AccI	GTMKAC	1 cut(s)	2130
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	1409, 2291
AcoI	YGGCCR	2 cut(s)	1734, 2401
AcsI	RAATTY	6 cut(s)	219, 316, 816, 1127, 1514, 2101
AcyI	GRCGYC	2 cut(s)	1220, 2605
AdeI	CACNNNGTG	2 cut(s)	383, 1973
AfaI	GTAC	7 cut(s)	352, 481, 585, 1326, 1599, 1760, 2204
AfeI	AGCGCT	1 cut(s)	700
AfiI	CCNNNNNNNGG	2 cut(s)	163, 1544
AflIII	ACRYGT	2 cut(s)	786, 1755
AgeI	ACCGGT	2 cut(s)	1409, 1537
AhlI	ACTAGT	1 cut(s)	181
AjiI	CACGTC	1 cut(s)	598
AjnI	CCWGG	3 cut(s)	1003, 1573, 1942
Alw21I	GWGCWC	7 cut(s)	573, 1500, 1637, 1654, 1789, 1921, 2374
Alw26I	GTCTC	4 cut(s)	1327, 1528, 2157, 2583
Alw44I	GTGCAC	1 cut(s)	1496
AlwI	GGATC	2 cut(s)	1409, 2291
AlwNI	CAGNNNCTG	2 cut(s)	1835, 2192
Aor51HI	AGCGCT	1 cut(s)	700
AoxI	GGCC	3 cut(s)	1159, 1734, 2401
ApaLI	GTGCAC	1 cut(s)	1496
ApeKI	GCWGC	4 cut(s)	683, 1061, 1098, 1819
ApoI	RAATTY	6 cut(s)	219, 316, 816, 1127, 1514, 2101
AseI	ATTAAT	2 cut(s)	1049, 2070
AsiGI	ACCGGT	2 cut(s)	1409, 1537
Asp700I	GAANNNNTTC	4 cut(s)	18, 733, 1980, 2105
AspLEI	GCGC	1 cut(s)	701
AsuHPI	GGTGA	7 cut(s)	61, 142, 208, 652, 1243, 1424, 1572
AsuII	TTCGAA	2 cut(s)	2096, 2493
BaeGI	GKGCMC	1 cut(s)	1500
BalI	TGGCCA	1 cut(s)	2403
BanI	GGYRCC	2 cut(s)	383, 449
BanII	GRGCYC	1 cut(s)	1637
BarI	GAAGNNNNNNTAC	4 cut(s)	721, 753, 1584, 1616
BauI	CACGAG	1 cut(s)	1971
BbsI	GAAGAC	3 cut(s)	67, 220, 1389
Bbv12I	GWGCWC	7 cut(s)	573, 1500, 1637, 1654, 1789, 1921, 2374
BbvI	GCAGC	4 cut(s)	695, 1073, 1085, 1806
BccI	CCATC	3 cut(s)	155, 1992, 2595
BceAI	ACGGC	1 cut(s)	1294
BciT130I	CCWGG	3 cut(s)	1005, 1575, 1944
BciVI	GTATCC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	1248
BcoDI	GTCTC	4 cut(s)	1327, 1528, 2157, 2583
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	8 cut(s)	182, 380, 440, 593, 1379, 1403, 1803, 2007
BfmI	CTRYAG	5 cut(s)	520, 738, 1601, 1827, 2383
BfoI	RGCGCY	1 cut(s)	702
BfuAI	ACCTGC	2 cut(s)	478, 1903
BfuI	GTATCC	1 cut(s)	28
BglII	AGATCT	1 cut(s)	2305
BisI	GCNGC	4 cut(s)	684, 1062, 1099, 1820
BlpI	GCTNAGC	1 cut(s)	795
BlsI	GCNGC	4 cut(s)	685, 1063, 1100, 1821
BmcAI	AGTACT	1 cut(s)	1599
Bme1390I	CCNGG	3 cut(s)	1005, 1575, 1944
BmgBI	CACGTC	1 cut(s)	598
BmiI	GGNNCC	2 cut(s)	385, 451
BmrFI	CCNGG	3 cut(s)	1005, 1575, 1944
BmsI	GCATC	5 cut(s)	136, 544, 952, 1348, 1688
BpiI	GAAGAC	3 cut(s)	67, 220, 1389
BplI	GAGNNNNNCTC	1 cut(s)	2608
BpmI	CTGGAG	2 cut(s)	2038, 2181
Bpu1102I	GCTNAGC	1 cut(s)	795
Bpu14I	TTCGAA	2 cut(s)	2096, 2493
BpuEI	CTTGAG	6 cut(s)	14, 868, 1408, 1687, 1747, 2357
BsaHI	GRCGYC	2 cut(s)	1220, 2605
BsaI	GGTCTC	1 cut(s)	1528
BsaJI	CCNNGG	3 cut(s)	966, 1793, 1942
BsaWI	WCCGGW	2 cut(s)	1409, 1537
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 1544
Bse118I	RCCGGY	2 cut(s)	1409, 1537
Bse1I	ACTGG	2 cut(s)	1723, 2164
Bse3DI	GCAATG	2 cut(s)	482, 1786
BseBI	CCWGG	3 cut(s)	1005, 1575, 1944
BseDI	CCNNGG	3 cut(s)	966, 1793, 1942
BseGI	GGATG	5 cut(s)	967, 1251, 1363, 1703, 2587
BseLI	CCNNNNNNNGG	2 cut(s)	163, 1544
BseMI	GCAATG	2 cut(s)	482, 1786
BseMII	CTCAG	4 cut(s)	215, 786, 823, 2184
BseNI	ACTGG	2 cut(s)	1723, 2164
BseRI	GAGGAG	2 cut(s)	77, 2266
BseSI	GKGCMC	1 cut(s)	1500
BseXI	GCAGC	4 cut(s)	695, 1073, 1085, 1806
BsgI	GTGCAG	1 cut(s)	1194
Bsh1285I	CGRYCG	1 cut(s)	1080
BshFI	GGCC	3 cut(s)	1161, 1736, 2403
BshNI	GGYRCC	2 cut(s)	383, 449
BshTI	ACCGGT	2 cut(s)	1409, 1537
BsiEI	CGRYCG	1 cut(s)	1080
BsiHKAI	GWGCWC	7 cut(s)	573, 1500, 1637, 1654, 1789, 1921, 2374
BsiSI	CCGG	3 cut(s)	1410, 1538, 1750
BslI	CCNNNNNNNGG	2 cut(s)	163, 1544
BsmAI	GTCTC	4 cut(s)	1327, 1528, 2157, 2583
BsmI	GAATGC	2 cut(s)	733, 1064
BsnI	GGCC	3 cut(s)	1161, 1736, 2403
Bso31I	GGTCTC	1 cut(s)	1528
Bsp119I	TTCGAA	2 cut(s)	2096, 2493
Bsp1286I	GDGCHC	7 cut(s)	573, 1500, 1637, 1654, 1789, 1921, 2374
Bsp1407I	TGTACA	1 cut(s)	479
Bsp143I	GATC	6 cut(s)	742, 1077, 1248, 1414, 2296, 2305
Bsp1720I	GCTNAGC	1 cut(s)	795
Bsp19I	CCATGG	1 cut(s)	966
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	3 cut(s)	1161, 1736, 2403
BspCNI	CTCAG	4 cut(s)	214, 787, 822, 2185
BspHI	TCATGA	2 cut(s)	759, 1530
BspLI	GGNNCC	2 cut(s)	385, 451
BspMAI	CTGCAG	1 cut(s)	1831
BspMI	ACCTGC	2 cut(s)	478, 1903
BspPI	GGATC	2 cut(s)	1409, 2291
BspQI	GCTCTTC	2 cut(s)	117, 578
BspT104I	TTCGAA	2 cut(s)	2096, 2493
BspT107I	GGYRCC	2 cut(s)	383, 449
BspTNI	GGTCTC	1 cut(s)	1528
BsrDI	GCAATG	2 cut(s)	482, 1786
BsrFI	RCCGGY	2 cut(s)	1409, 1537
BsrGI	TGTACA	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	1723, 2164
BssAI	RCCGGY	2 cut(s)	1409, 1537
BssECI	CCNNGG	3 cut(s)	966, 1793, 1942
BssMI	GATC	6 cut(s)	742, 1077, 1248, 1414, 2296, 2305
BssNAI	GTATAC	1 cut(s)	2131
BssNI	GRCGYC	2 cut(s)	1220, 2605
BssSI	CACGAG	1 cut(s)	1971
BssT1I	CCWWGG	2 cut(s)	966, 1793
Bst1107I	GTATAC	1 cut(s)	2131
Bst2BI	CACGAG	1 cut(s)	1971
Bst2UI	CCWGG	3 cut(s)	1005, 1575, 1944
Bst4CI	ACNGT	9 cut(s)	73, 355, 459, 524, 826, 1140, 1285, 1436, 1495
Bst6I	CTCTTC	7 cut(s)	117, 578, 659, 675, 1100, 2154, 2588
BstACI	GRCGYC	2 cut(s)	1220, 2605
BstAUI	TGTACA	1 cut(s)	479
BstBI	TTCGAA	2 cut(s)	2096, 2493
BstC8I	GCNNGC	3 cut(s)	903, 991, 1159
BstDEI	CTNAG	8 cut(s)	201, 494, 795, 809, 1922, 2193, 2487, 2538
BstDSI	CCRYGG	1 cut(s)	966
BstF5I	GGATG	5 cut(s)	967, 1251, 1363, 1703, 2587
BstH2I	RGCGCY	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	701
BstKTI	GATC	6 cut(s)	745, 1080, 1251, 1417, 2299, 2308
BstMAI	GTCTC	4 cut(s)	1327, 1528, 2157, 2583
BstMBI	GATC	6 cut(s)	742, 1077, 1248, 1414, 2296, 2305
BstMCI	CGRYCG	1 cut(s)	1080
BstMWI	GCNNNNNNNGC	4 cut(s)	449, 995, 1428, 1707
BstNI	CCWGG	3 cut(s)	1005, 1575, 1944
BstNSI	RCATGY	4 cut(s)	790, 905, 1340, 1759
BstSCI	CCNGG	3 cut(s)	1003, 1573, 1942
BstSFI	CTRYAG	5 cut(s)	520, 738, 1601, 1827, 2383
BstSLI	GKGCMC	1 cut(s)	1500
BstV1I	GCAGC	4 cut(s)	695, 1073, 1085, 1806
BstV2I	GAAGAC	3 cut(s)	67, 220, 1389
BstX2I	RGATCY	1 cut(s)	2305
BstYI	RGATCY	1 cut(s)	2305
BstZ17I	GTATAC	1 cut(s)	2131
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	1161, 1736, 2403
BtgI	CCRYGG	1 cut(s)	966
BtrI	CACGTC	1 cut(s)	598
BtsCI	GGATG	5 cut(s)	967, 1251, 1363, 1703, 2587
BtsI	GCAGTG	2 cut(s)	1836, 2360
BtsIMutI	CAGTG	7 cut(s)	529, 616, 817, 1233, 1290, 1836, 2360
BveI	ACCTGC	2 cut(s)	478, 1903
Cac8I	GCNNGC	3 cut(s)	903, 991, 1159
CaiI	CAGNNNCTG	2 cut(s)	1835, 2192
CciI	TCATGA	2 cut(s)	759, 1530
CfoI	GCGC	1 cut(s)	701
Cfr10I	RCCGGY	2 cut(s)	1409, 1537
CseI	GACGC	2 cut(s)	1825, 2594
Csp6I	GTAC	7 cut(s)	351, 480, 584, 1325, 1598, 1759, 2203
CspAI	ACCGGT	2 cut(s)	1409, 1537
CspCI	CAANNNNNGTGG	4 cut(s)	43, 78, 1246, 1281
CviQI	GTAC	7 cut(s)	351, 480, 584, 1325, 1598, 1759, 2203
DdeI	CTNAG	8 cut(s)	201, 494, 795, 809, 1922, 2193, 2487, 2538
DpnI	GATC	6 cut(s)	744, 1079, 1250, 1416, 2298, 2307
DpnII	GATC	6 cut(s)	742, 1077, 1248, 1414, 2296, 2305
DraIII	CACNNNGTG	2 cut(s)	383, 1973
EaeI	YGGCCR	2 cut(s)	1734, 2401
Eam1104I	CTCTTC	7 cut(s)	117, 578, 659, 675, 1100, 2154, 2588
EarI	CTCTTC	7 cut(s)	117, 578, 659, 675, 1100, 2154, 2588
Ecl136II	GAGCTC	1 cut(s)	1635
Eco130I	CCWWGG	2 cut(s)	966, 1793
Eco147I	AGGCCT	1 cut(s)	1161
Eco24I	GRGCYC	1 cut(s)	1637
Eco31I	GGTCTC	1 cut(s)	1528
Eco32I	GATATC	1 cut(s)	2560
Eco47III	AGCGCT	1 cut(s)	700
Eco53kI	GAGCTC	1 cut(s)	1635
EcoICRI	GAGCTC	1 cut(s)	1635
EcoRII	CCWGG	3 cut(s)	1003, 1573, 1942
EcoRV	GATATC	1 cut(s)	2560
EcoT14I	CCWWGG	2 cut(s)	966, 1793
EcoT22I	ATGCAT	1 cut(s)	907
EcoT38I	GRGCYC	1 cut(s)	1637
ErhI	CCWWGG	2 cut(s)	966, 1793
FalI	AAGNNNNNCTT	2 cut(s)	2567, 2599
FauNDI	CATATG	3 cut(s)	2062, 2470, 2500
FbaI	TGATCA	1 cut(s)	1248
FblI	GTMKAC	1 cut(s)	2130
Fnu4HI	GCNGC	4 cut(s)	684, 1062, 1099, 1820
FokI	GGATG	5 cut(s)	974, 1258, 1370, 1710, 2574
FriOI	GRGCYC	1 cut(s)	1637
Fsp4HI	GCNGC	4 cut(s)	684, 1062, 1099, 1820
FspBI	CTAG	8 cut(s)	182, 380, 440, 593, 1379, 1403, 1803, 2007
GlaI	GCGC	1 cut(s)	700
GluI	GCNGC	4 cut(s)	684, 1062, 1099, 1820
GsuI	CTGGAG	2 cut(s)	2038, 2181
HaeII	RGCGCY	1 cut(s)	702
HaeIII	GGCC	3 cut(s)	1161, 1736, 2403
HapII	CCGG	3 cut(s)	1410, 1538, 1750
HgaI	GACGC	2 cut(s)	1825, 2594
HhaI	GCGC	1 cut(s)	701
Hin1I	GRCGYC	2 cut(s)	1220, 2605
Hin6I	GCGC	1 cut(s)	699
HinP1I	GCGC	1 cut(s)	699
HincII	GTYRAC	1 cut(s)	1136
HindII	GTYRAC	1 cut(s)	1136
HindIII	AAGCTT	1 cut(s)	1765
HpaII	CCGG	3 cut(s)	1410, 1538, 1750
HphI	GGTGA	7 cut(s)	61, 142, 208, 652, 1243, 1424, 1572
Hpy166II	GTNNAC	8 cut(s)	215, 1136, 1215, 1498, 1550, 1580, 2004, 2131
Hpy188I	TCNGA	6 cut(s)	24, 423, 931, 1055, 1357, 2209
Hpy8I	GTNNAC	8 cut(s)	215, 1136, 1215, 1498, 1550, 1580, 2004, 2131
Hpy99I	CGWCG	1 cut(s)	1222
HpyAV	CCTTC	8 cut(s)	167, 723, 1050, 1106, 1421, 1443, 1576, 2279
HpyCH4III	ACNGT	9 cut(s)	73, 355, 459, 524, 826, 1140, 1285, 1436, 1495
HpyCH4IV	ACGT	3 cut(s)	597, 606, 1220
HpyF10VI	GCNNNNNNNGC	4 cut(s)	449, 995, 1428, 1707
HpyF3I	CTNAG	8 cut(s)	201, 494, 795, 809, 1922, 2193, 2487, 2538
HpySE526I	ACGT	3 cut(s)	597, 606, 1220
Hsp92I	GRCGYC	2 cut(s)	1220, 2605
HspAI	GCGC	1 cut(s)	699
Ksp22I	TGATCA	1 cut(s)	1248
Kzo9I	GATC	6 cut(s)	742, 1077, 1248, 1414, 2296, 2305
LguI	GCTCTTC	2 cut(s)	117, 578
LmnI	GCTCC	5 cut(s)	1632, 1707, 1784, 1916, 2377
Lsp1109I	GCAGC	4 cut(s)	695, 1073, 1085, 1806
LweI	GCATC	5 cut(s)	136, 544, 952, 1348, 1688
MaeI	CTAG	8 cut(s)	182, 380, 440, 593, 1379, 1403, 1803, 2007
MaeII	ACGT	3 cut(s)	597, 606, 1220
MaeIII	GTNAC	7 cut(s)	196, 849, 871, 1177, 1663, 2188, 2280
MalI	GATC	6 cut(s)	744, 1079, 1250, 1416, 2298, 2307
MboI	GATC	6 cut(s)	742, 1077, 1248, 1414, 2296, 2305
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	1 cut(s)	2305
MhlI	GDGCHC	7 cut(s)	573, 1500, 1637, 1654, 1789, 1921, 2374
MlsI	TGGCCA	1 cut(s)	2403
MluNI	TGGCCA	1 cut(s)	2403
MlyI	GAGTC	5 cut(s)	152, 193, 1220, 1471, 2498
MmeI	TCCRAC	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	2403
Mph1103I	ATGCAT	1 cut(s)	907
MroXI	GAANNNNTTC	4 cut(s)	18, 733, 1980, 2105
MscI	TGGCCA	1 cut(s)	2403
MslI	CAYNNNNRTG	1 cut(s)	845
Msp20I	TGGCCA	1 cut(s)	2403
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	3 cut(s)	1410, 1538, 1750
MspR9I	CCNGG	3 cut(s)	1005, 1575, 1944
MunI	CAATTG	1 cut(s)	1014
Mva1269I	GAATGC	2 cut(s)	733, 1064
MvaI	CCWGG	3 cut(s)	1005, 1575, 1944
MwoI	GCNNNNNNNGC	4 cut(s)	449, 995, 1428, 1707
NcoI	CCATGG	1 cut(s)	966
NdeI	CATATG	3 cut(s)	2062, 2470, 2500
NdeII	GATC	6 cut(s)	742, 1077, 1248, 1414, 2296, 2305
NlaIV	GGNNCC	2 cut(s)	385, 451
NmeAIII	GCCGAG	1 cut(s)	1356
NmuCI	GTSAC	3 cut(s)	196, 849, 1663
NsiI	ATGCAT	1 cut(s)	907
NspI	RCATGY	4 cut(s)	790, 905, 1340, 1759
NspV	TTCGAA	2 cut(s)	2096, 2493
PaeI	GCATGC	1 cut(s)	905
PagI	TCATGA	2 cut(s)	759, 1530
PaqCI	CACCTGC	1 cut(s)	1903
PceI	AGGCCT	1 cut(s)	1161
PciI	ACATGT	2 cut(s)	786, 1755
PciSI	GCTCTTC	2 cut(s)	117, 578
PcsI	WCGNNNNNNNCGW	2 cut(s)	603, 2093
PctI	GAATGC	2 cut(s)	733, 1064
PdmI	GAANNNNTTC	4 cut(s)	18, 733, 1980, 2105
PfeI	GAWTC	8 cut(s)	470, 763, 805, 1606, 1645, 1672, 1679, 2237
PfoI	TCCNGGA	1 cut(s)	1003
PinAI	ACCGGT	2 cut(s)	1409, 1537
PkrI	GCNGC	4 cut(s)	685, 1063, 1100, 1821
Ple19I	CGATCG	1 cut(s)	1080
PleI	GAGTC	5 cut(s)	151, 193, 1219, 1471, 2498
PpsI	GAGTC	5 cut(s)	151, 193, 1219, 1471, 2498
PscI	ACATGT	2 cut(s)	786, 1755
PshBI	ATTAAT	2 cut(s)	1049, 2070
Psp124BI	GAGCTC	1 cut(s)	1637
Psp6I	CCWGG	3 cut(s)	1003, 1573, 1942
PspGI	CCWGG	3 cut(s)	1003, 1573, 1942
PspN4I	GGNNCC	2 cut(s)	385, 451
PstI	CTGCAG	1 cut(s)	1831
PstNI	CAGNNNCTG	2 cut(s)	1835, 2192
PsuI	RGATCY	1 cut(s)	2305
PvuI	CGATCG	1 cut(s)	1080
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	7 cut(s)	352, 481, 585, 1326, 1599, 1760, 2204
RsaNI	GTAC	7 cut(s)	351, 480, 584, 1325, 1598, 1759, 2203
RseI	CAYNNNNRTG	1 cut(s)	845
SacI	GAGCTC	1 cut(s)	1637
SapI	GCTCTTC	2 cut(s)	117, 578
SatI	GCNGC	4 cut(s)	684, 1062, 1099, 1820
Sau3AI	GATC	6 cut(s)	742, 1077, 1248, 1414, 2296, 2305
ScaI	AGTACT	1 cut(s)	1599
SchI	GAGTC	5 cut(s)	152, 193, 1220, 1471, 2498
ScrFI	CCNGG	3 cut(s)	1005, 1575, 1944
SduI	GDGCHC	7 cut(s)	573, 1500, 1637, 1654, 1789, 1921, 2374
SfaNI	GCATC	5 cut(s)	136, 544, 952, 1348, 1688
SfcI	CTRYAG	5 cut(s)	520, 738, 1601, 1827, 2383
SfuI	TTCGAA	2 cut(s)	2096, 2493
SmiMI	CAYNNNNRTG	1 cut(s)	845
SmlI	CTYRAG	6 cut(s)	29, 883, 1387, 1702, 1762, 2336
SmoI	CTYRAG	6 cut(s)	29, 883, 1387, 1702, 1762, 2336
SpeI	ACTAGT	1 cut(s)	181
SphI	GCATGC	1 cut(s)	905
SseBI	AGGCCT	1 cut(s)	1161
SsiI	CCGC	1 cut(s)	153
SspI	AATATT	1 cut(s)	1351
SspMI	CTAG	8 cut(s)	182, 380, 440, 593, 1379, 1403, 1803, 2007
SstI	GAGCTC	1 cut(s)	1637
StuI	AGGCCT	1 cut(s)	1161
StyD4I	CCNGG	3 cut(s)	1003, 1573, 1942
StyI	CCWWGG	2 cut(s)	966, 1793
TaaI	ACNGT	9 cut(s)	73, 355, 459, 524, 826, 1140, 1285, 1436, 1495
TaiI	ACGT	3 cut(s)	600, 609, 1223
TaqI	TCGA	9 cut(s)	207, 430, 1028, 1298, 1447, 1839, 2096, 2310, 2493
TaqII	GACCGA	1 cut(s)	98
TatI	WGTACW	6 cut(s)	479, 583, 1324, 1597, 1758, 2202
TfiI	GAWTC	8 cut(s)	470, 763, 805, 1606, 1645, 1672, 1679, 2237
TscAI	CASTG	7 cut(s)	529, 616, 817, 1233, 1290, 1836, 2360
TseFI	GTSAC	3 cut(s)	196, 849, 1663
TseI	GCWGC	4 cut(s)	683, 1061, 1098, 1819
Tsp45I	GTSAC	3 cut(s)	196, 849, 1663
TspDTI	ATGAA	6 cut(s)	913, 1057, 1132, 1519, 1598, 1605
TspGWI	ACGGA	6 cut(s)	389, 482, 1121, 1258, 1728, 2543
TspRI	CASTG	7 cut(s)	529, 616, 817, 1233, 1290, 1836, 2360
VneI	GTGCAC	1 cut(s)	1496
VspI	ATTAAT	2 cut(s)	1049, 2070
XapI	RAATTY	6 cut(s)	219, 316, 816, 1127, 1514, 2101
XbaI	TCTAGA	2 cut(s)	1378, 1802
XceI	RCATGY	4 cut(s)	790, 905, 1340, 1759
XmiI	GTMKAC	1 cut(s)	2130
XmnI	GAANNNNTTC	4 cut(s)	18, 733, 1980, 2105
XspI	CTAG	8 cut(s)	182, 380, 440, 593, 1379, 1403, 1803, 2007
ZraI	GACGTC	1 cut(s)	1221
ZrmI	AGTACT	1 cut(s)	1599
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.