FvH4_6g05300

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
2985034 .. 2989123
4090 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05300.t3

Sequence Viewer

Length: 1674 bp
ATGGCAGTTCTTGAAACCATTCATGCACTCAAGGATTCATTTCTCGACACCGCCACCGTTATTGCACTCACTGTCTTCTTCACACTCCTCTGCCTCTGTATCATCATTGGTCATTTGTTGGAAGAGCATCGTTGGGCTAATGAATCCATCACCGCCCTTCTTTTGGGTTTGATTGCTGGAGTAGTGGTGTTGCTGGTGACTCAGTTCGAGAGTTCACAAATTTTGGTCTTCAATGAGGACTTGTTCTTCCTCTATTTACTTCCTCCAATCATTTTCAATGCCGGTTTTCAGGTCAAGAAAAAGCAATTTTTCAAGAATTTCACAACAATTTTGCTGTTTGGTATAGTTGGTACAGTAATTTCTTTCTGCCTCATATCACTAGGTGCCTTTTTACTTTTCAGGAGATTTGGTTTCACAACTCTGACCATTCAAGATTACCTAGCGATTGGTGCCATATTGTCAGCAACGGATTCAGTTTGTACATTGCAGGTTCTTAGTCAAGATGACACTCCCTTTCTCTACAGTGTTGTATTTGGGGAGGGAGTAGTGAATGATGCTACCTCTATCGTGCTCTTCAATGCAGTACAATCACTAGATGTGAAGGACGTCAGCGGTCTTACAGCCTTGAACTTGTTAGGCACTTTTCTTTACCTCTTCTCCACCAGCACTCTTCTTGGTATAGCAGCTGGCCTTATGAGCGCTTATATCATAAAAACGCTTTACTTAGGAAGGCATTCTACAGATCGTGAAGTAGCTCTCATGATGCTTATGGCTTATTTGTCATACATGTTGGCTGAGCTTTTGGATCTTAGTGGAATTTTGACAGTTTTCTTCTGTGGCATAGTAATGTCACATTACACATGGCACAATGTTACAGAAAGCTCAAGGATAACAACCAAGCATGCATTTGCAACAATGTCTTTCATTGCAGAAACCTTTATATTCCTCTATGTTGGTATGGATGCCATGGACATTGACAAATGGAAAGCCAGCAATGCAAGTCCAGGAACTTCAGTTGGTGTGAGTTCCATGTTGTTTGCACTTGTATTAATCGGAAGGGCAGCATTCGTATTCCCGATTGCAAACATTTCGAATTGCTTCAGGAAGAGAGAAAACACTAAAATTGAATTCCGTCAACAGTTCATAATGTGGTGGGCAGGCCTAATGAGAGGTGCAGTTACTATTGCTTTGTCATACAACCAATTCGCAGACGCCACAACATCATCAACGCAAGATAATGCACTGATGATCACCTCCACCATTATTGTTGTTCTATTCAGCACAGTGGTTTTTGGCTCGATAACAAAGCCGTTGATTGAAGCTGTACTGCTGCGACATGCAAAACCAAACCACAATATTTCAGATGCAACGGATATTCCAAGTCTAGAAGACTTGAGGCTTTTGTTCATAGAAACTGGTGAACCAAGTGAAGAAGGCAATGGTCAGTCAAGTCGAAAGCGAACTGGCTTAAGGTTTCTCACGAGTTCTACAGTGCACCATTTGTGGAGAAAATTTGATGACAAGTTCATGAGACCGGTATTTGGTGGACGGGGTTTTGTTCCTTTCGTTCCTAGTTCACCAAGTGGTGCAATTGATGGTGCACCAAATCGTCCATTTGATGGTGCACCAAGTCATGCATTTGATGGTGCAATTGAAGAGGAACAAACTACTTAA

Protein Analysis

558

Amino Acids

61.38

Weight (kDa)

5.66

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 37 - 398 2.6e-54 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 609
Acc36I ACCTGC 1 cut(s) 478
AccB1I GGYRCC 2 cut(s) 383, 449
AccB7I CCANNNNNTGG 1 cut(s) 1619
AciI CCGC 3 cut(s) 51, 153, 612
AclWI GGATC 1 cut(s) 813
AcsI RAATTY 5 cut(s) 219, 316, 816, 1127, 1511
AcuI CTGAAG 2 cut(s) 996, 1084
AcyI GRCGYC 2 cut(s) 606, 1212
AdeI CACNNNGTG 2 cut(s) 383, 1583
AfaI GTAC 4 cut(s) 352, 481, 585, 1326
AfeI AGCGCT 1 cut(s) 700
AfiI CCNNNNNNNGG 3 cut(s) 163, 1541, 1619
AflII CTTAAG 1 cut(s) 1468
AflIII ACRYGT 1 cut(s) 786
AgeI ACCGGT 1 cut(s) 1534
AjnI CCWGG 1 cut(s) 1003
AluBI AGCT 5 cut(s) 686, 755, 799, 882, 1322
AluI AGCT 5 cut(s) 686, 755, 799, 882, 1322
Alw21I GWGCWC 4 cut(s) 573, 1497, 1603, 1627
Alw26I GTCTC 1 cut(s) 1525
Alw44I GTGCAC 3 cut(s) 1493, 1599, 1623
AlwI GGATC 1 cut(s) 813
Aor51HI AGCGCT 1 cut(s) 700
AoxI GGCC 2 cut(s) 688, 1159
ApaLI GTGCAC 3 cut(s) 1493, 1599, 1623
ApeKI GCWGC 3 cut(s) 683, 1061, 1330
ApoI RAATTY 5 cut(s) 219, 316, 816, 1127, 1511
AseI ATTAAT 1 cut(s) 1049
AsiGI ACCGGT 1 cut(s) 1534
Asp700I GAANNNNTTC 3 cut(s) 18, 733, 1097
AspLEI GCGC 1 cut(s) 701
AsuHPI GGTGA 5 cut(s) 142, 208, 1243, 1430, 1569
AsuII TTCGAA 1 cut(s) 1091
BaeGI GKGCMC 3 cut(s) 1497, 1603, 1627
BanI GGYRCC 2 cut(s) 383, 449
BarI GAAGNNNNNNTAC 2 cut(s) 721, 753
BauI CACGAG 1 cut(s) 1480
BbsI GAAGAC 3 cut(s) 67, 220, 1395
Bbv12I GWGCWC 4 cut(s) 573, 1497, 1603, 1627
BbvI GCAGC 3 cut(s) 695, 1073, 1317
BccI CCATC 4 cut(s) 155, 1589, 1613, 1637
BceAI ACGGC 1 cut(s) 1294
BcgI CGANNNNNNTGC 2 cut(s) 1071, 1105
BciT130I CCWGG 1 cut(s) 1005
BclI TGATCA 1 cut(s) 1248
BcoDI GTCTC 1 cut(s) 1525
BfaI CTAG 5 cut(s) 380, 440, 593, 1385, 1572
BfmI CTRYAG 3 cut(s) 520, 738, 1488
BfoI RGCGCY 1 cut(s) 702
BfrI CTTAAG 1 cut(s) 1468
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 3 cut(s) 684, 1062, 1331
BlpI GCTNAGC 1 cut(s) 795
BlsI GCNGC 3 cut(s) 685, 1063, 1332
Bme1390I CCNGG 1 cut(s) 1005
BmiI GGNNCC 2 cut(s) 385, 451
BmrFI CCNGG 1 cut(s) 1005
BmsI GCATC 5 cut(s) 136, 544, 753, 952, 1354
BpiI GAAGAC 3 cut(s) 67, 220, 1395
BpmI CTGGAG 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 795
Bpu14I TTCGAA 1 cut(s) 1091
BpuEI CTTGAG 3 cut(s) 14, 868, 1414
BsaHI GRCGYC 2 cut(s) 606, 1212
BsaI GGTCTC 1 cut(s) 1525
BsaJI CCNNGG 1 cut(s) 966
BsaWI WCCGGW 1 cut(s) 1534
BsaXI ACNNNNNCTCC 6 cut(s) 171, 201, 394, 424, 641, 671
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 1541, 1619
Bse118I RCCGGY 2 cut(s) 281, 1534
Bse1I ACTGG 2 cut(s) 1420, 1468
Bse3DI GCAATG 4 cut(s) 482, 924, 1000, 1444
BseBI CCWGG 1 cut(s) 1005
BseDI CCNNGG 1 cut(s) 966
BseGI GGATG 1 cut(s) 967
BseLI CCNNNNNNNGG 3 cut(s) 163, 1541, 1619
BseMI GCAATG 4 cut(s) 482, 924, 1000, 1444
BseMII CTCAG 2 cut(s) 215, 786
BseNI ACTGG 2 cut(s) 1420, 1468
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 3 cut(s) 1497, 1603, 1627
BseXI GCAGC 3 cut(s) 695, 1073, 1317
BsgI GTGCAG 1 cut(s) 1194
BshFI GGCC 2 cut(s) 690, 1161
BshNI GGYRCC 2 cut(s) 383, 449
BshTI ACCGGT 1 cut(s) 1534
BsiHKAI GWGCWC 4 cut(s) 573, 1497, 1603, 1627
BsiSI CCGG 2 cut(s) 282, 1535
BslI CCNNNNNNNGG 3 cut(s) 163, 1541, 1619
BsmAI GTCTC 1 cut(s) 1525
BsmI GAATGC 2 cut(s) 733, 1064
BsnI GGCC 2 cut(s) 690, 1161
Bso31I GGTCTC 1 cut(s) 1525
Bsp119I TTCGAA 1 cut(s) 1091
Bsp1286I GDGCHC 4 cut(s) 573, 1497, 1603, 1627
Bsp1407I TGTACA 1 cut(s) 479
Bsp143I GATC 3 cut(s) 742, 805, 1248
Bsp1720I GCTNAGC 1 cut(s) 795
Bsp19I CCATGG 1 cut(s) 966
BspACI CCGC 3 cut(s) 51, 153, 612
BspANI GGCC 2 cut(s) 690, 1161
BspCNI CTCAG 2 cut(s) 214, 787
BspHI TCATGA 2 cut(s) 759, 1527
BspLI GGNNCC 2 cut(s) 385, 451
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 1 cut(s) 813
BspQI GCTCTTC 2 cut(s) 117, 578
BspT104I TTCGAA 1 cut(s) 1091
BspT107I GGYRCC 2 cut(s) 383, 449
BspTI CTTAAG 1 cut(s) 1468
BspTNI GGTCTC 1 cut(s) 1525
BsrDI GCAATG 4 cut(s) 482, 924, 1000, 1444
BsrFI RCCGGY 2 cut(s) 281, 1534
BsrGI TGTACA 1 cut(s) 479
BsrI ACTGG 2 cut(s) 1420, 1468
BssAI RCCGGY 2 cut(s) 281, 1534
BssECI CCNNGG 1 cut(s) 966
BssMI GATC 3 cut(s) 742, 805, 1248
BssNI GRCGYC 2 cut(s) 606, 1212
BssSI CACGAG 1 cut(s) 1480
BssT1I CCWWGG 1 cut(s) 966
Bst2BI CACGAG 1 cut(s) 1480
Bst2UI CCWGG 1 cut(s) 1005
Bst4CI ACNGT 8 cut(s) 58, 73, 355, 524, 826, 1140, 1285, 1492
Bst6I CTCTTC 6 cut(s) 117, 578, 659, 675, 1100, 1650
BstACI GRCGYC 2 cut(s) 606, 1212
BstAFI CTTAAG 1 cut(s) 1468
BstAUI TGTACA 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 1091
BstC8I GCNNGC 4 cut(s) 688, 903, 991, 1159
BstDEI CTNAG 5 cut(s) 201, 494, 724, 795, 809
BstDSI CCRYGG 1 cut(s) 966
BstF5I GGATG 1 cut(s) 967
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 1 cut(s) 701
BstKTI GATC 3 cut(s) 745, 808, 1251
BstMAI GTCTC 1 cut(s) 1525
BstMBI GATC 3 cut(s) 742, 805, 1248
BstMWI GCNNNNNNNGC 3 cut(s) 449, 696, 995
BstNI CCWGG 1 cut(s) 1005
BstNSI RCATGY 3 cut(s) 790, 905, 1340
BstSCI CCNGG 1 cut(s) 1003
BstSFI CTRYAG 3 cut(s) 520, 738, 1488
BstSLI GKGCMC 3 cut(s) 1497, 1603, 1627
BstV1I GCAGC 3 cut(s) 695, 1073, 1317
BstV2I GAAGAC 3 cut(s) 67, 220, 1395
BstX2I RGATCY 1 cut(s) 805
BstYI RGATCY 1 cut(s) 805
BsuRI GGCC 2 cut(s) 690, 1161
BtgI CCRYGG 1 cut(s) 966
BtsCI GGATG 1 cut(s) 967
BtsIMutI CAGTG 5 cut(s) 69, 529, 1241, 1290, 1497
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 4 cut(s) 688, 903, 991, 1159
CciI TCATGA 2 cut(s) 759, 1527
CfoI GCGC 1 cut(s) 701
Cfr10I RCCGGY 2 cut(s) 281, 1534
CseI GACGC 1 cut(s) 1220
Csp6I GTAC 4 cut(s) 351, 480, 584, 1325
CspAI ACCGGT 1 cut(s) 1534
CspCI CAANNNNNGTGG 4 cut(s) 43, 78, 1246, 1281
CviQI GTAC 4 cut(s) 351, 480, 584, 1325
DdeI CTNAG 5 cut(s) 201, 494, 724, 795, 809
DpnI GATC 3 cut(s) 744, 807, 1250
DpnII GATC 3 cut(s) 742, 805, 1248
DraIII CACNNNGTG 2 cut(s) 383, 1583
Eam1104I CTCTTC 6 cut(s) 117, 578, 659, 675, 1100, 1650
EarI CTCTTC 6 cut(s) 117, 578, 659, 675, 1100, 1650
Eco130I CCWWGG 1 cut(s) 966
Eco147I AGGCCT 1 cut(s) 1161
Eco31I GGTCTC 1 cut(s) 1525
Eco47III AGCGCT 1 cut(s) 700
Eco57I CTGAAG 2 cut(s) 996, 1084
EcoRI GAATTC 1 cut(s) 1127
EcoRII CCWGG 1 cut(s) 1003
EcoT14I CCWWGG 1 cut(s) 966
EcoT22I ATGCAT 2 cut(s) 907, 1639
ErhI CCWWGG 1 cut(s) 966
FbaI TGATCA 1 cut(s) 1248
Fnu4HI GCNGC 3 cut(s) 684, 1062, 1331
FokI GGATG 1 cut(s) 974
Fsp4HI GCNGC 3 cut(s) 684, 1062, 1331
FspBI CTAG 5 cut(s) 380, 440, 593, 1385, 1572
GlaI GCGC 1 cut(s) 700
GluI GCNGC 3 cut(s) 684, 1062, 1331
GsuI CTGGAG 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 702
HaeIII GGCC 2 cut(s) 690, 1161
HapII CCGG 2 cut(s) 282, 1535
HgaI GACGC 1 cut(s) 1220
HhaI GCGC 1 cut(s) 701
Hin1I GRCGYC 2 cut(s) 606, 1212
Hin6I GCGC 1 cut(s) 699
HinP1I GCGC 1 cut(s) 699
HincII GTYRAC 1 cut(s) 1136
HindII GTYRAC 1 cut(s) 1136
HinfI GANTC 4 cut(s) 35, 143, 199, 470
HpaII CCGG 2 cut(s) 282, 1535
HphI GGTGA 5 cut(s) 142, 208, 1243, 1430, 1569
Hpy166II GTNNAC 8 cut(s) 215, 1136, 1421, 1495, 1547, 1577, 1601, 1625
Hpy188I TCNGA 3 cut(s) 423, 1055, 1363
Hpy8I GTNNAC 8 cut(s) 215, 1136, 1421, 1495, 1547, 1577, 1601, 1625
HpyAV CCTTC 5 cut(s) 167, 595, 723, 1050, 1427
HpyCH4III ACNGT 8 cut(s) 58, 73, 355, 524, 826, 1140, 1285, 1492
HpyCH4IV ACGT 1 cut(s) 606
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 696, 995
HpyF3I CTNAG 5 cut(s) 201, 494, 724, 795, 809
HpySE526I ACGT 1 cut(s) 606
Hsp92I GRCGYC 2 cut(s) 606, 1212
HspAI GCGC 1 cut(s) 699
Ksp22I TGATCA 1 cut(s) 1248
Kzo9I GATC 3 cut(s) 742, 805, 1248
LguI GCTCTTC 2 cut(s) 117, 578
Lsp1109I GCAGC 3 cut(s) 695, 1073, 1317
LweI GCATC 5 cut(s) 136, 544, 753, 952, 1354
MaeI CTAG 5 cut(s) 380, 440, 593, 1385, 1572
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 4 cut(s) 196, 849, 871, 1177
MalI GATC 3 cut(s) 744, 807, 1250
MboI GATC 3 cut(s) 742, 805, 1248
MfeI CAATTG 2 cut(s) 1590, 1650
MflI RGATCY 1 cut(s) 805
MhlI GDGCHC 4 cut(s) 573, 1497, 1603, 1627
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 99
Mph1103I ATGCAT 2 cut(s) 907, 1639
MroXI GAANNNNTTC 3 cut(s) 18, 733, 1097
MseI TTAA 3 cut(s) 1049, 1469, 1672
MslI CAYNNNNRTG 1 cut(s) 845
MspA1I CMGCKG 2 cut(s) 612, 686
MspCI CTTAAG 1 cut(s) 1468
MspI CCGG 2 cut(s) 282, 1535
MspR9I CCNGG 1 cut(s) 1005
MunI CAATTG 2 cut(s) 1590, 1650
Mva1269I GAATGC 2 cut(s) 733, 1064
MvaI CCWGG 1 cut(s) 1005
MwoI GCNNNNNNNGC 3 cut(s) 449, 696, 995
NcoI CCATGG 1 cut(s) 966
NdeII GATC 3 cut(s) 742, 805, 1248
NlaIV GGNNCC 2 cut(s) 385, 451
NmuCI GTSAC 2 cut(s) 196, 849
NsiI ATGCAT 2 cut(s) 907, 1639
NspI RCATGY 3 cut(s) 790, 905, 1340
NspV TTCGAA 1 cut(s) 1091
PaeI GCATGC 1 cut(s) 905
PagI TCATGA 2 cut(s) 759, 1527
PceI AGGCCT 1 cut(s) 1161
PciI ACATGT 1 cut(s) 786
PciSI GCTCTTC 2 cut(s) 117, 578
PctI GAATGC 2 cut(s) 733, 1064
PdmI GAANNNNTTC 3 cut(s) 18, 733, 1097
PfeI GAWTC 3 cut(s) 35, 143, 470
PflMI CCANNNNNTGG 1 cut(s) 1619
PfoI TCCNGGA 1 cut(s) 1003
PinAI ACCGGT 1 cut(s) 1534
PkrI GCNGC 3 cut(s) 685, 1063, 1332
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PscI ACATGT 1 cut(s) 786
PshBI ATTAAT 1 cut(s) 1049
Psp6I CCWGG 1 cut(s) 1003
PspGI CCWGG 1 cut(s) 1003
PspN4I GGNNCC 2 cut(s) 385, 451
PsuI RGATCY 1 cut(s) 805
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 4 cut(s) 352, 481, 585, 1326
RsaNI GTAC 4 cut(s) 351, 480, 584, 1325
RseI CAYNNNNRTG 1 cut(s) 845
SapI GCTCTTC 2 cut(s) 117, 578
SaqAI TTAA 3 cut(s) 1049, 1469, 1672
SatI GCNGC 3 cut(s) 684, 1062, 1331
Sau3AI GATC 3 cut(s) 742, 805, 1248
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 1005
SduI GDGCHC 4 cut(s) 573, 1497, 1603, 1627
SfaNI GCATC 5 cut(s) 136, 544, 753, 952, 1354
SfcI CTRYAG 3 cut(s) 520, 738, 1488
SfuI TTCGAA 1 cut(s) 1091
SmiMI CAYNNNNRTG 1 cut(s) 845
SmlI CTYRAG 4 cut(s) 29, 883, 1393, 1468
SmoI CTYRAG 4 cut(s) 29, 883, 1393, 1468
SphI GCATGC 1 cut(s) 905
SseBI AGGCCT 1 cut(s) 1161
SsiI CCGC 3 cut(s) 51, 153, 612
SspI AATATT 1 cut(s) 1357
SspMI CTAG 5 cut(s) 380, 440, 593, 1385, 1572
StuI AGGCCT 1 cut(s) 1161
StyD4I CCNGG 1 cut(s) 1003
StyI CCWWGG 1 cut(s) 966
TaaI ACNGT 8 cut(s) 58, 73, 355, 524, 826, 1140, 1285, 1492
TaiI ACGT 1 cut(s) 609
TaqI TCGA 5 cut(s) 45, 207, 1091, 1298, 1453
TatI WGTACW 3 cut(s) 479, 583, 1324
TfiI GAWTC 3 cut(s) 35, 143, 470
Tru1I TTAA 3 cut(s) 1049, 1469, 1672
Tru9I TTAA 3 cut(s) 1049, 1469, 1672
TscAI CASTG 5 cut(s) 76, 529, 1248, 1290, 1497
TseFI GTSAC 2 cut(s) 196, 849
TseI GCWGC 3 cut(s) 683, 1061, 1330
Tsp45I GTSAC 2 cut(s) 196, 849
TspDTI ATGAA 7 cut(s) 11, 27, 156, 913, 1132, 1396, 1516
TspGWI ACGGA 3 cut(s) 482, 1121, 1385
TspRI CASTG 5 cut(s) 76, 529, 1248, 1290, 1497
Van91I CCANNNNNTGG 1 cut(s) 1619
Vha464I CTTAAG 1 cut(s) 1468
VneI GTGCAC 3 cut(s) 1493, 1599, 1623
VspI ATTAAT 1 cut(s) 1049
XapI RAATTY 5 cut(s) 219, 316, 816, 1127, 1511
XbaI TCTAGA 1 cut(s) 1384
XceI RCATGY 3 cut(s) 790, 905, 1340
XmnI GAANNNNTTC 3 cut(s) 18, 733, 1097
XspI CTAG 5 cut(s) 380, 440, 593, 1385, 1572
ZraI GACGTC 1 cut(s) 607
Zsp2I ATGCAT 2 cut(s) 907, 1639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.