Rw0G004440

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00168
Physical Location & Seq
Reverse (-)
138564 .. 142214
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004440.1

Sequence Viewer

Length: 1572 bp
ATGGCAGAACTATATGATTTCGCAAAGAACTTAGCTCATGACCATGCTCAGGTGGTACCAATCTCACTTTTTGTGGCGGTTCTCTGTATTTGCTTAGTCGTCGGACACTTGCTTGAAGAAAATCGATGGGTTAATGAATCCATTACCGCCATTTTCATCGGCCTGCTAACTGGGATCATAATCTTGCTCGTGAGCAAGGGGAAAAGTTCTCACATTCTGACATTTAATGAAGAGTTGTTCTTTATATATCTCCTGCCGCCTATTATATTTAATGCCGGGTTTCAGGTCAAGAAGAAACAGTTCTTTCAAAATTTCTTAACTATCATGTTGTTTGGGGTGATTGGCGTTTTCATTTCAACGTTAGTCATAACAGCTGGTGCCTGGTTCCTATTTCCTAAGTCGGGCTTTGTTGGCCTGAACGCACGAGACTATCTCGCTGTAGGAACAATATTTTCATCAACTGATACAGTCTGTACACTGCAGGTTCTTCATCAAGATGAAACTCCTTTACTGTACAGCTTAGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTCCTATTCAATGCAGTTCAGAAGATTGATGTTAATAAGCTTAATAGCGGGATTGGACTGCGTGTCATTGGAGATTTCCTTTACCTGTTCTCAACAAGCACTGCTCTTGGAGTTGCATTCGGACTTGTGACAGCATATTCCCTTAAAACCTTATGCTTTGGAAGGCATTCAAGCATTCGGGAGGTTTCTTTAGTGGTTCTAATGGCCTATCTGTCTTACATGGTGGCTGAGCTGTTAGACCTGAGTGGAATCCTCACTGTTTTCTTCTGTGGGATTGTCATGTCACACTATGCTTGGCATAATGTCACTGAAAGTTCAAGAATCACAACCAGGCATGTATTTGCAATGATGTCATTTATTGCAGAAACATTCATATTTCTTTATGTCGGAATGGATGCTCTTGACATTGAGAAGTGGAAATTAACCAAGTTGAGTTTTGGGGCTTCAATGGGCATCTATAGTATGACACTCTTACTAATATTGCTTGGACGTGCTGCCTTTGTATTCCCTCTCTCTGCATTCTCCAATTACATGAATAGACGAGCCTCGAGAAGATGTTCACTTTCATTTAGACACCAGATAATCATATGGTGGGCTGGGCTAATAAGAGGAGCTGTCTCCATTGCTTTGGCTTTCAAACAGTTCACATACTCTGGGGTCACATTGGATCCAATCAATGCAATGATGATTACAAACACAATAATAGTTGTTCTCTTCAGTACAGTGGTCTTTGGCTTTCTGACGAAGCCACTTACAAGTTATCTGCTTCCCCATGTTGGAACTAAGCCCATCAGTCGCAACATATCAAAGGACGTTGGGGAGGACTTAAACCTGCCTCTGCTCTCCTTCGATGAATCTACTGCTACCAATATAAGTCGTGCAAAGGATAATTTGTCTATGTTGATGGAGAGGCCTGTGTACGTGATACATTCTTACTGGAGGAGGTTCGATGACGCCTATATGAGACCCCTATTTGGGGGGCCGCCAGTTAGTAACCAGTCTACTTGTTAA

Protein Analysis

523

Amino Acids

58.28

Weight (kDa)

8.55

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 26 - 439 7.9e-55 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 472, 1401
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 2 cut(s) 55, 377
AccI GTMKAC 1 cut(s) 1562
AciI CCGC 5 cut(s) 77, 147, 257, 609, 1544
AclI AACGTT 1 cut(s) 359
AclWI GGATC 3 cut(s) 182, 1223, 1236
AcsI RAATTY 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 1261
AcyI GRCGYC 1 cut(s) 1515
AfaI GTAC 5 cut(s) 57, 475, 515, 1282, 1481
AfiI CCNNNNNNNGG 6 cut(s) 49, 401, 1337, 1535, 1536, 1537
AgsI TTSAA 8 cut(s) 116, 308, 357, 571, 732, 879, 1008, 1198
AhdI GACNNNNNGTC 1 cut(s) 623
AjiI CACGTC 1 cut(s) 1052
AjnI CCWGG 2 cut(s) 380, 890
AluBI AGCT 6 cut(s) 35, 374, 519, 601, 793, 1175
AluI AGCT 6 cut(s) 35, 374, 519, 601, 793, 1175
Alw26I GTCTC 3 cut(s) 420, 1183, 1519
AlwI GGATC 3 cut(s) 182, 1223, 1236
Ama87I CYCGRG 1 cut(s) 1108
AoxI GGCC 5 cut(s) 160, 412, 765, 1472, 1541
ApeKI GCWGC 1 cut(s) 1055
ApoI RAATTY 1 cut(s) 310
Asp700I GAANNNNTTC 3 cut(s) 299, 727, 1117
Asp718I GGTACC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 1541
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 349, 553
AvaI CYCGRG 1 cut(s) 1108
BamHI GGATCC 1 cut(s) 1228
BanI GGYRCC 2 cut(s) 55, 377
BauI CACGAG 2 cut(s) 188, 423
BbvI GCAGC 1 cut(s) 1042
BccI CCATC 3 cut(s) 120, 1358, 1459
BciT130I CCWGG 2 cut(s) 382, 892
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 420, 1183, 1519
BfmI CTRYAG 3 cut(s) 438, 479, 1018
BfuAI ACCTGC 2 cut(s) 472, 1401
BisI GCNGC 3 cut(s) 257, 1056, 1544
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 3 cut(s) 258, 1057, 1545
Bme1390I CCNGG 3 cut(s) 277, 382, 892
BmeRI GACNNNNNGTC 1 cut(s) 623
BmeT110I CYCGRG 1 cut(s) 1108
BmgBI CACGTC 1 cut(s) 1052
BmgT120I GGNCC 1 cut(s) 1541
BmiI GGNNCC 5 cut(s) 57, 379, 386, 1230, 1542
BmrFI CCNGG 3 cut(s) 277, 382, 892
BmrI ACTGGG 1 cut(s) 180
BmsI GCATC 3 cut(s) 538, 946, 1023
BmuI ACTGGG 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 417, 449
BpmI CTGGAG 1 cut(s) 1519
Bpu10I CCTNAGC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 789
BpuMI CCSGG 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 124
BsaAI YACGTR 1 cut(s) 1483
BsaBI GATNNNNATC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 1515
BsaI GGTCTC 1 cut(s) 1519
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 401, 1337, 1535, 1536, 1537
Bse1I ACTGG 4 cut(s) 175, 1502, 1547, 1558
Bse3DI GCAATG 3 cut(s) 912, 1182, 1248
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 2 cut(s) 382, 892
BseCI ATCGAT 1 cut(s) 124
BseGI GGATG 1 cut(s) 961
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 6 cut(s) 49, 401, 1337, 1535, 1536, 1537
BseMI GCAATG 3 cut(s) 912, 1182, 1248
BseMII CTCAG 3 cut(s) 62, 780, 794
BseNI ACTGG 4 cut(s) 175, 1502, 1547, 1558
BseRI GAGGAG 2 cut(s) 1185, 1516
BseXI GCAGC 1 cut(s) 1042
BseYI CCCAGC 1 cut(s) 1157
BshFI GGCC 5 cut(s) 162, 414, 767, 1474, 1543
BshNI GGYRCC 2 cut(s) 55, 377
BshVI ATCGAT 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 1108
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 6 cut(s) 49, 401, 1337, 1535, 1536, 1537
BsmAI GTCTC 3 cut(s) 420, 1183, 1519
BsmI GAATGC 4 cut(s) 677, 727, 735, 1079
BsnI GGCC 5 cut(s) 162, 414, 767, 1474, 1543
Bso31I GGTCTC 1 cut(s) 1519
BsoBI CYCGRG 1 cut(s) 1108
Bsp1407I TGTACA 2 cut(s) 473, 513
Bsp143I GATC 2 cut(s) 174, 1228
Bsp1720I GCTNAGC 1 cut(s) 789
BspACI CCGC 5 cut(s) 77, 147, 257, 609, 1544
BspANI GGCC 5 cut(s) 162, 414, 767, 1474, 1543
BspCNI CTCAG 3 cut(s) 61, 781, 795
BspDI ATCGAT 1 cut(s) 124
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 5 cut(s) 57, 379, 386, 1230, 1542
BspMAI CTGCAG 1 cut(s) 483
BspMI ACCTGC 2 cut(s) 472, 1401
BspPI GGATC 3 cut(s) 182, 1223, 1236
BspT107I GGYRCC 2 cut(s) 55, 377
BspTNI GGTCTC 1 cut(s) 1519
BsrDI GCAATG 3 cut(s) 912, 1182, 1248
BsrGI TGTACA 2 cut(s) 473, 513
BsrI ACTGG 4 cut(s) 175, 1502, 1547, 1558
BssMI GATC 2 cut(s) 174, 1228
BssNI GRCGYC 1 cut(s) 1515
BssSI CACGAG 2 cut(s) 188, 423
Bst2BI CACGAG 2 cut(s) 188, 423
Bst2UI CCWGG 2 cut(s) 382, 892
Bst4CI ACNGT 6 cut(s) 300, 469, 513, 820, 1203, 1285
Bst6I CTCTTC 2 cut(s) 225, 1280
BstACI GRCGYC 1 cut(s) 1515
BstAUI TGTACA 2 cut(s) 473, 513
BstBAI YACGTR 1 cut(s) 1483
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 8 cut(s) 31, 48, 94, 396, 520, 789, 803, 1344
BstF5I GGATG 1 cut(s) 961
BstKTI GATC 2 cut(s) 177, 1231
BstMAI GTCTC 3 cut(s) 420, 1183, 1519
BstMBI GATC 2 cut(s) 174, 1228
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 2 cut(s) 382, 892
BstNSI RCATGY 1 cut(s) 899
BstSCI CCNGG 3 cut(s) 275, 380, 890
BstSFI CTRYAG 3 cut(s) 438, 479, 1018
BstV1I GCAGC 1 cut(s) 1042
BstX2I RGATCY 1 cut(s) 1228
BstXI CCANNNNNNTGG 1 cut(s) 1189
BstYI RGATCY 1 cut(s) 1228
Bsu15I ATCGAT 1 cut(s) 124
BsuRI GGCC 5 cut(s) 162, 414, 767, 1474, 1543
BsuTUI ATCGAT 1 cut(s) 124
BtrI CACGTC 1 cut(s) 1052
BtsCI GGATG 1 cut(s) 961
BtsI GCAGTG 2 cut(s) 476, 660
BtsIMutI CAGTG 5 cut(s) 476, 660, 816, 867, 1290
BveI ACCTGC 2 cut(s) 472, 1401
Cac8I GCNNGC 1 cut(s) 164
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 1541
ClaI ATCGAT 1 cut(s) 124
CseI GACGC 1 cut(s) 1523
Csp6I GTAC 5 cut(s) 56, 474, 514, 1281, 1480
CviAII CATG 8 cut(s) 38, 44, 325, 781, 841, 896, 1093, 1334
CviQI GTAC 5 cut(s) 56, 474, 514, 1281, 1480
DdeI CTNAG 8 cut(s) 31, 48, 94, 396, 520, 789, 803, 1344
DpnI GATC 2 cut(s) 176, 1230
DpnII GATC 2 cut(s) 174, 1228
DriI GACNNNNNGTC 1 cut(s) 623
Eam1104I CTCTTC 2 cut(s) 225, 1280
Eam1105I GACNNNNNGTC 1 cut(s) 623
EarI CTCTTC 2 cut(s) 225, 1280
Eco147I AGGCCT 1 cut(s) 1474
Eco31I GGTCTC 1 cut(s) 1519
Eco57I CTGAAG 1 cut(s) 1261
Eco88I CYCGRG 1 cut(s) 1108
EcoRII CCWGG 2 cut(s) 380, 890
FaeI CATG 8 cut(s) 41, 47, 328, 784, 844, 899, 1096, 1337
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 8 cut(s) 37, 43, 324, 780, 840, 895, 1092, 1333
FauI CCCGC 1 cut(s) 602
FauNDI CATATG 1 cut(s) 1148
FblI GTMKAC 1 cut(s) 1562
Fnu4HI GCNGC 3 cut(s) 257, 1056, 1544
FokI GGATG 1 cut(s) 968
Fsp4HI GCNGC 3 cut(s) 257, 1056, 1544
GluI GCNGC 3 cut(s) 257, 1056, 1544
GsaI CCCAGC 1 cut(s) 1161
GsuI CTGGAG 1 cut(s) 1519
HaeIII GGCC 5 cut(s) 162, 414, 767, 1474, 1543
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 1523
Hin1I GRCGYC 1 cut(s) 1515
Hin1II CATG 8 cut(s) 41, 47, 328, 784, 844, 899, 1096, 1337
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 4 cut(s) 137, 810, 882, 1415
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 349, 553
Hpy166II GTNNAC 5 cut(s) 476, 1121, 1206, 1480, 1563
Hpy188I TCNGA 6 cut(s) 104, 219, 582, 683, 950, 1302
Hpy188III TCNNGA 8 cut(s) 38, 190, 289, 494, 740, 879, 962, 1110
Hpy8I GTNNAC 5 cut(s) 476, 1121, 1206, 1480, 1563
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 527, 717, 1417
HpyCH4III ACNGT 6 cut(s) 300, 469, 513, 820, 1203, 1285
HpyCH4IV ACGT 4 cut(s) 359, 1051, 1374, 1482
HpyCH4V TGCA 9 cut(s) 481, 551, 575, 677, 905, 923, 1079, 1241, 1442
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 8 cut(s) 31, 48, 94, 396, 520, 789, 803, 1344
HpySE526I ACGT 4 cut(s) 359, 1051, 1374, 1482
Hsp92I GRCGYC 1 cut(s) 1515
Hsp92II CATG 8 cut(s) 41, 47, 328, 784, 844, 899, 1096, 1337
KpnI GGTACC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 174, 1228
LmnI GCTCC 1 cut(s) 1172
Lsp1109I GCAGC 1 cut(s) 1042
LweI GCATC 3 cut(s) 538, 946, 1023
MaeII ACGT 4 cut(s) 359, 1051, 1374, 1482
MaeIII GTNAC 5 cut(s) 688, 843, 865, 1219, 1553
MalI GATC 2 cut(s) 176, 1230
MboI GATC 2 cut(s) 174, 1228
MboII GAAGA 8 cut(s) 128, 242, 304, 479, 595, 817, 1125, 1267
MflI RGATCY 1 cut(s) 1228
MluCI AATT 4 cut(s) 310, 980, 1087, 1450
MmeI TCCRAC 3 cut(s) 82, 928, 1318
MroXI GAANNNNTTC 3 cut(s) 299, 727, 1117
MslI CAYNNNNRTG 2 cut(s) 42, 495
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 3 cut(s) 277, 382, 892
Mva1269I GAATGC 4 cut(s) 677, 727, 735, 1079
MvaI CCWGG 2 cut(s) 382, 892
MwoI GCNNNNNNNGC 1 cut(s) 411
NciI CCSGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 1148
NdeII GATC 2 cut(s) 174, 1228
NlaIII CATG 8 cut(s) 41, 47, 328, 784, 844, 899, 1096, 1337
NlaIV GGNNCC 5 cut(s) 57, 379, 386, 1230, 1542
NmuCI GTSAC 4 cut(s) 688, 843, 865, 1219
NspI RCATGY 1 cut(s) 899
PaeR7I CTCGAG 1 cut(s) 1108
PagI TCATGA 1 cut(s) 37
PceI AGGCCT 1 cut(s) 1474
PctI GAATGC 4 cut(s) 677, 727, 735, 1079
PdmI GAANNNNTTC 3 cut(s) 299, 727, 1117
PfeI GAWTC 4 cut(s) 137, 810, 882, 1415
PkrI GCNGC 3 cut(s) 258, 1057, 1545
Ppu21I YACGTR 1 cut(s) 1483
Psp1406I AACGTT 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 380, 890
PspFI CCCAGC 1 cut(s) 1157
PspGI CCWGG 2 cut(s) 380, 890
PspN4I GGNNCC 5 cut(s) 57, 379, 386, 1230, 1542
PspPI GGNCC 1 cut(s) 1541
PstI CTGCAG 1 cut(s) 483
PsuI RGATCY 1 cut(s) 1228
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 5 cut(s) 57, 475, 515, 1282, 1481
RsaNI GTAC 5 cut(s) 56, 474, 514, 1281, 1480
RseI CAYNNNNRTG 2 cut(s) 42, 495
SatI GCNGC 3 cut(s) 257, 1056, 1544
Sau3AI GATC 2 cut(s) 174, 1228
Sau96I GGNCC 1 cut(s) 1541
ScrFI CCNGG 3 cut(s) 277, 382, 892
SfaNI GCATC 3 cut(s) 538, 946, 1023
SfcI CTRYAG 3 cut(s) 438, 479, 1018
Sfr274I CTCGAG 1 cut(s) 1108
SlaI CTCGAG 1 cut(s) 1108
SmiMI CAYNNNNRTG 2 cut(s) 42, 495
SmlI CTYRAG 1 cut(s) 1108
SmoI CTYRAG 1 cut(s) 1108
Sse9I AATT 4 cut(s) 310, 980, 1087, 1450
SseBI AGGCCT 1 cut(s) 1474
SsiI CCGC 5 cut(s) 77, 147, 257, 609, 1544
SspI AATATT 2 cut(s) 450, 1041
StuI AGGCCT 1 cut(s) 1474
StyD4I CCNGG 3 cut(s) 275, 380, 890
TaaI ACNGT 6 cut(s) 300, 469, 513, 820, 1203, 1285
TaiI ACGT 4 cut(s) 362, 1054, 1377, 1485
TaqI TCGA 4 cut(s) 124, 1109, 1410, 1509
TasI AATT 4 cut(s) 310, 980, 1087, 1450
TatI WGTACW 3 cut(s) 473, 513, 1280
TauI GCSGC 2 cut(s) 259, 1546
TfiI GAWTC 4 cut(s) 137, 810, 882, 1415
TscAI CASTG 5 cut(s) 483, 667, 823, 874, 1290
TseFI GTSAC 4 cut(s) 688, 843, 865, 1219
TseI GCWGC 1 cut(s) 1055
Tsp45I GTSAC 4 cut(s) 688, 843, 865, 1219
TspRI CASTG 5 cut(s) 483, 667, 823, 874, 1290
XapI RAATTY 1 cut(s) 310
XceI RCATGY 1 cut(s) 899
XhoI CTCGAG 1 cut(s) 1108
XmiI GTMKAC 1 cut(s) 1562
XmnI GAANNNNTTC 3 cut(s) 299, 727, 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.