FvH4_3g30310

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
23511451 .. 23515388
3938 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30310.t1

Sequence Viewer

Length: 1569 bp
ATGGCAGATATATATGACTTCGCAAAGAACTTGGCTCATGACCATGCTCAGGTTATACCAATCTCACTTTTCGTGGCGGTTCTCTGTGTTTGCTTAGTCGTCGGACACTTGTTCGAGGAAAACCGATGGGTGAATGAATCCATTACCGCCATTTTCATCGGATTCTTAACTGGAACCATAATCTTGCTTGTGAGCAAGGGGAAAAGTTCTCACGTTCTGACATTTGATGAAGAGTTGTTCTTTATATATCTCCTGCCGCCTATTATATTTAATGCCGGGTTTCAGGTCAAGAAGAAACAGTTCTTTCAGAATTTCTTAACTATCATGTTGTTTGGGGTGATTGGTGTTTTCATTTCAACGTTAATCATTACGGCTGGTGCCTGGTTCCTATTCCCTAAGTTGGGCTTCGTTGGCCTGAATGCACGAGACTACCTCGCTGTGGGAACAATATTTTCATCAACTGATACAGTCTGTACACTGCAGGTTCTTCATCAAGACGAAACTCCTTTACTGTACAGCTTAGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTCCTATTCAATGCAGTTCAGAAAATTGATGTTAATAAACTCAATAGTGGGGTTGGACTGCGTGTCATTGGAGACTTCCTTTACCTGTTTTCAACAAGCACTGCTCTTGGAGTTGCATTCGGACTTGTGACAGCATATTCCCTTAAGACCTTAAGCTTTGGAAGGCATTCAAGCATTCGGGAGATTTCTGTAGTCGTTCTAATGGCCTATCTGTCTTACATGGTGGCTGAGCTGTTAGACCTGAGTGGAATTCTCACTGTTTTCTTTTGTGGGATTCTCATGTCACACTATGCTTGGCATAATATCACTGAAAGTTCAAGAATCACAACCAGGCATGTATTTGCAATGATGTCATTTATTGCAGAAACATTCATATTTCTTTATGTTGGAATGGATGCTCTTGACATTGAGAAGTGGAGATTGACTAAGCTGAGTTTTGGGGCTTCTATGGGAGTCTATAGTACGACACTCTTACTGATATTGCTTGGACGTGCTGCATTTGTGTTCCCTCTCTCTGCATTCTCCAATTACATGAATAGACGAGCCTCGAGAAGATGTTCACTCGCACTCAAACACCAGGTAATCATATGGTGGGCTGGGCTAATAAGAGGAGCAGTCTCCATTGCTTTGGCTTTCAAACAGTTCACATACTCTGGTGTCACGTTGGATCCAATAAACGCAATGATGATCACAAACACCATAATAGTTGTTCTCTTCAGCACACTGGTATTTGGCTTTTTGACAAAGCCTCTTATAAATTATCTTCTTCCCCATGGTGGAACTAACCCCATCAGTCGCAAAGAGTCGAAGGACATTGGGGAGGACATGAATCTGCCCCTGCTCTCATTTGATGAATCTGCTGCTACTAACCTAAGTCGCGCAAAGGATAACTTGTCTATGTTGATCGAGAGACCTGTGTACACTATACATTCATACTGGAGGAGGTTTGACGACGCCTACATGAGACCCCTATTTGGTGGGCCGGTTAGTGACCAGTCTACATGTTAA

Protein Analysis

523

Amino Acids

58.15

Weight (kDa)

7.67

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 33 - 439 1.7e-53 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1316
Acc36I ACCTGC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 1559
AccII CGCG 1 cut(s) 1440
AciI CCGC 3 cut(s) 77, 147, 257
AclI AACGTT 1 cut(s) 359
AclWI GGATC 2 cut(s) 1223, 1236
AcsI RAATTY 2 cut(s) 310, 810
AcuI CTGAAG 1 cut(s) 1261
AcyI GRCGYC 1 cut(s) 1515
AfaI GTAC 4 cut(s) 475, 515, 1024, 1481
AfiI CCNNNNNNNGG 6 cut(s) 49, 400, 401, 439, 1337, 1535
AflII CTTAAG 2 cut(s) 704, 712
AflIII ACRYGT 1 cut(s) 1562
AgsI TTSAA 6 cut(s) 357, 571, 654, 732, 879, 1198
AhdI GACNNNNNGTC 1 cut(s) 623
AjiI CACGTC 1 cut(s) 1052
AjnI CCWGG 3 cut(s) 380, 890, 1137
AluBI AGCT 4 cut(s) 519, 717, 793, 991
AluI AGCT 4 cut(s) 519, 717, 793, 991
Alw26I GTCTC 5 cut(s) 420, 627, 1183, 1465, 1519
AlwI GGATC 2 cut(s) 1223, 1236
Ama87I CYCGRG 1 cut(s) 1108
AoxI GGCC 3 cut(s) 412, 765, 1541
ApeKI GCWGC 2 cut(s) 1055, 1421
ApoI RAATTY 2 cut(s) 310, 810
Asp700I GAANNNNTTC 3 cut(s) 299, 727, 1117
AspLEI GCGC 1 cut(s) 1442
AspS9I GGNCC 1 cut(s) 1541
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 3 cut(s) 142, 349, 553
AvaI CYCGRG 1 cut(s) 1108
BamHI GGATCC 1 cut(s) 1228
BanI GGYRCC 1 cut(s) 377
BauI CACGAG 1 cut(s) 423
BbvI GCAGC 2 cut(s) 1042, 1408
BccI CCATC 2 cut(s) 120, 1358
BceAI ACGGC 1 cut(s) 387
BciT130I CCWGG 3 cut(s) 382, 892, 1139
BclI TGATCA 1 cut(s) 1248
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 5 cut(s) 420, 627, 1183, 1465, 1519
BfmI CTRYAG 3 cut(s) 479, 750, 1018
BfrI CTTAAG 2 cut(s) 704, 712
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 3 cut(s) 257, 1056, 1422
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 3 cut(s) 258, 1057, 1423
Bme1390I CCNGG 4 cut(s) 277, 382, 892, 1139
BmeRI GACNNNNNGTC 1 cut(s) 623
BmeT110I CYCGRG 1 cut(s) 1108
BmgBI CACGTC 1 cut(s) 1052
BmgT120I GGNCC 1 cut(s) 1541
BmiI GGNNCC 4 cut(s) 175, 379, 386, 1230
BmrFI CCNGG 4 cut(s) 277, 382, 892, 1139
BmsI GCATC 2 cut(s) 538, 946
BplI GAGNNNNNCTC 2 cut(s) 417, 449
BpmI CTGGAG 1 cut(s) 1519
Bpu10I CCTNAGC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 789
BpuMI CCSGG 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 1515
BsaI GGTCTC 2 cut(s) 1465, 1519
BsaJI CCNNGG 1 cut(s) 1333
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 400, 401, 439, 1337, 1535
Bse118I RCCGGY 1 cut(s) 1543
Bse1I ACTGG 4 cut(s) 175, 1290, 1502, 1555
Bse3DI GCAATG 3 cut(s) 912, 1182, 1248
BseBI CCWGG 3 cut(s) 382, 892, 1139
BseDI CCNNGG 1 cut(s) 1333
BseGI GGATG 1 cut(s) 961
BseLI CCNNNNNNNGG 6 cut(s) 49, 400, 401, 439, 1337, 1535
BseMI GCAATG 3 cut(s) 912, 1182, 1248
BseMII CTCAG 4 cut(s) 62, 780, 794, 983
BseNI ACTGG 4 cut(s) 175, 1290, 1502, 1555
BseRI GAGGAG 2 cut(s) 1185, 1516
BseXI GCAGC 2 cut(s) 1042, 1408
BseYI CCCAGC 1 cut(s) 1157
Bsh1236I CGCG 1 cut(s) 1440
BshFI GGCC 3 cut(s) 414, 767, 1543
BshNI GGYRCC 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 1108
BsiSI CCGG 2 cut(s) 276, 1544
BslI CCNNNNNNNGG 6 cut(s) 49, 400, 401, 439, 1337, 1535
BsmAI GTCTC 5 cut(s) 420, 627, 1183, 1465, 1519
BsmI GAATGC 5 cut(s) 424, 677, 727, 735, 1079
BsnI GGCC 3 cut(s) 414, 767, 1543
Bso31I GGTCTC 2 cut(s) 1465, 1519
BsoBI CYCGRG 1 cut(s) 1108
Bsp1407I TGTACA 3 cut(s) 473, 513, 1479
Bsp143I GATC 3 cut(s) 1228, 1248, 1464
Bsp1720I GCTNAGC 1 cut(s) 789
Bsp19I CCATGG 1 cut(s) 1333
BspACI CCGC 3 cut(s) 77, 147, 257
BspANI GGCC 3 cut(s) 414, 767, 1543
BspCNI CTCAG 4 cut(s) 61, 781, 795, 984
BspFNI CGCG 1 cut(s) 1440
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 4 cut(s) 175, 379, 386, 1230
BspMAI CTGCAG 1 cut(s) 483
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 2 cut(s) 1223, 1236
BspT107I GGYRCC 1 cut(s) 377
BspTI CTTAAG 2 cut(s) 704, 712
BspTNI GGTCTC 2 cut(s) 1465, 1519
BsrDI GCAATG 3 cut(s) 912, 1182, 1248
BsrFI RCCGGY 1 cut(s) 1543
BsrGI TGTACA 3 cut(s) 473, 513, 1479
BsrI ACTGG 4 cut(s) 175, 1290, 1502, 1555
BssAI RCCGGY 1 cut(s) 1543
BssECI CCNNGG 1 cut(s) 1333
BssMI GATC 3 cut(s) 1228, 1248, 1464
BssNI GRCGYC 1 cut(s) 1515
BssSI CACGAG 1 cut(s) 423
BssT1I CCWWGG 1 cut(s) 1333
Bst2BI CACGAG 1 cut(s) 423
Bst2UI CCWGG 3 cut(s) 382, 892, 1139
Bst4CI ACNGT 5 cut(s) 300, 469, 513, 820, 1203
Bst6I CTCTTC 2 cut(s) 225, 1280
BstACI GRCGYC 1 cut(s) 1515
BstAFI CTTAAG 2 cut(s) 704, 712
BstAUI TGTACA 3 cut(s) 473, 513, 1479
BstDEI CTNAG 9 cut(s) 48, 94, 396, 520, 789, 803, 987, 992, 1433
BstDSI CCRYGG 1 cut(s) 1333
BstF5I GGATG 1 cut(s) 961
BstFNI CGCG 1 cut(s) 1440
BstHHI GCGC 1 cut(s) 1442
BstKTI GATC 3 cut(s) 1231, 1251, 1467
BstMAI GTCTC 5 cut(s) 420, 627, 1183, 1465, 1519
BstMBI GATC 3 cut(s) 1228, 1248, 1464
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 3 cut(s) 382, 892, 1139
BstNSI RCATGY 2 cut(s) 899, 1566
BstSCI CCNGG 4 cut(s) 275, 380, 890, 1137
BstSFI CTRYAG 3 cut(s) 479, 750, 1018
BstUI CGCG 1 cut(s) 1440
BstV1I GCAGC 2 cut(s) 1042, 1408
BstX2I RGATCY 1 cut(s) 1228
BstXI CCANNNNNNTGG 1 cut(s) 1189
BstYI RGATCY 1 cut(s) 1228
BsuRI GGCC 3 cut(s) 414, 767, 1543
BtgI CCRYGG 1 cut(s) 1333
BtrI CACGTC 1 cut(s) 1052
BtsCI GGATG 1 cut(s) 961
BtsI GCAGTG 2 cut(s) 476, 660
BtsIMutI CAGTG 5 cut(s) 476, 660, 816, 867, 1283
BveI ACCTGC 1 cut(s) 472
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 1442
Cfr10I RCCGGY 1 cut(s) 1543
Cfr13I GGNCC 1 cut(s) 1541
CseI GACGC 1 cut(s) 1523
CsiI ACCWGGT 1 cut(s) 1137
Csp6I GTAC 4 cut(s) 474, 514, 1023, 1480
CviQI GTAC 4 cut(s) 474, 514, 1023, 1480
DdeI CTNAG 9 cut(s) 48, 94, 396, 520, 789, 803, 987, 992, 1433
DpnI GATC 3 cut(s) 1230, 1250, 1466
DpnII GATC 3 cut(s) 1228, 1248, 1464
DriI GACNNNNNGTC 1 cut(s) 623
Eam1104I CTCTTC 2 cut(s) 225, 1280
Eam1105I GACNNNNNGTC 1 cut(s) 623
EarI CTCTTC 2 cut(s) 225, 1280
Eco130I CCWWGG 1 cut(s) 1333
Eco31I GGTCTC 2 cut(s) 1465, 1519
Eco57I CTGAAG 1 cut(s) 1261
Eco88I CYCGRG 1 cut(s) 1108
EcoRI GAATTC 1 cut(s) 810
EcoRII CCWGG 3 cut(s) 380, 890, 1137
EcoT14I CCWWGG 1 cut(s) 1333
ErhI CCWWGG 1 cut(s) 1333
FalI AAGNNNNNCTT 4 cut(s) 389, 421, 1436, 1468
FauNDI CATATG 1 cut(s) 1148
FbaI TGATCA 1 cut(s) 1248
FblI GTMKAC 1 cut(s) 1559
Fnu4HI GCNGC 3 cut(s) 257, 1056, 1422
FokI GGATG 1 cut(s) 968
Fsp4HI GCNGC 3 cut(s) 257, 1056, 1422
GlaI GCGC 1 cut(s) 1441
GluI GCNGC 3 cut(s) 257, 1056, 1422
GsaI CCCAGC 1 cut(s) 1161
GsuI CTGGAG 1 cut(s) 1519
HaeIII GGCC 3 cut(s) 414, 767, 1543
HapII CCGG 2 cut(s) 276, 1544
HgaI GACGC 1 cut(s) 1523
HhaI GCGC 1 cut(s) 1442
Hin1I GRCGYC 1 cut(s) 1515
Hin6I GCGC 1 cut(s) 1440
HinP1I GCGC 1 cut(s) 1440
HindIII AAGCTT 1 cut(s) 715
HinfI GANTC 8 cut(s) 137, 162, 835, 882, 1014, 1364, 1390, 1415
HpaII CCGG 2 cut(s) 276, 1544
HphI GGTGA 3 cut(s) 142, 349, 553
Hpy166II GTNNAC 6 cut(s) 476, 1121, 1206, 1480, 1482, 1560
Hpy188I TCNGA 6 cut(s) 104, 161, 219, 309, 582, 683
Hpy188III TCNNGA 8 cut(s) 38, 289, 494, 740, 879, 962, 1110, 1468
Hpy8I GTNNAC 6 cut(s) 476, 1121, 1206, 1480, 1482, 1560
Hpy99I CGWCG 2 cut(s) 104, 1517
HpyAV CCTTC 3 cut(s) 527, 717, 1363
HpyCH4III ACNGT 5 cut(s) 300, 469, 513, 820, 1203
HpyCH4IV ACGT 4 cut(s) 213, 359, 1051, 1223
HpyCH4V TGCA 9 cut(s) 422, 481, 551, 575, 677, 905, 923, 1058, 1079
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 9 cut(s) 48, 94, 396, 520, 789, 803, 987, 992, 1433
HpySE526I ACGT 4 cut(s) 213, 359, 1051, 1223
Hsp92I GRCGYC 1 cut(s) 1515
HspAI GCGC 1 cut(s) 1440
Ksp22I TGATCA 1 cut(s) 1248
Kzo9I GATC 3 cut(s) 1228, 1248, 1464
LmnI GCTCC 1 cut(s) 1172
Lsp1109I GCAGC 2 cut(s) 1042, 1408
LweI GCATC 2 cut(s) 538, 946
MabI ACCWGGT 1 cut(s) 1137
MaeII ACGT 4 cut(s) 213, 359, 1051, 1223
MaeIII GTNAC 4 cut(s) 688, 843, 1219, 1550
MalI GATC 3 cut(s) 1230, 1250, 1466
MboI GATC 3 cut(s) 1228, 1248, 1464
MboII GAAGA 7 cut(s) 242, 304, 479, 1125, 1267, 1316, 1319
MflI RGATCY 1 cut(s) 1228
MluCI AATT 5 cut(s) 310, 585, 810, 1087, 1318
MlyI GAGTC 2 cut(s) 1023, 1373
MmeI TCCRAC 4 cut(s) 82, 595, 928, 1206
MnlI CCTC 9 cut(s) 109, 443, 1080, 1117, 1163, 1320, 1375, 1494, 1497
MroXI GAANNNNTTC 3 cut(s) 299, 727, 1117
MseI TTAA 8 cut(s) 167, 270, 317, 362, 594, 705, 713, 1567
MslI CAYNNNNRTG 1 cut(s) 42
MspCI CTTAAG 2 cut(s) 704, 712
MspI CCGG 2 cut(s) 276, 1544
MspR9I CCNGG 4 cut(s) 277, 382, 892, 1139
Mva1269I GAATGC 5 cut(s) 424, 677, 727, 735, 1079
MvaI CCWGG 3 cut(s) 382, 892, 1139
MvnI CGCG 1 cut(s) 1440
MwoI GCNNNNNNNGC 1 cut(s) 411
NciI CCSGG 1 cut(s) 277
NcoI CCATGG 1 cut(s) 1333
NdeI CATATG 1 cut(s) 1148
NdeII GATC 3 cut(s) 1228, 1248, 1464
NlaIV GGNNCC 4 cut(s) 175, 379, 386, 1230
NmuCI GTSAC 4 cut(s) 688, 843, 1219, 1550
NspI RCATGY 2 cut(s) 899, 1566
PaeR7I CTCGAG 1 cut(s) 1108
PagI TCATGA 1 cut(s) 37
PciI ACATGT 1 cut(s) 1562
PctI GAATGC 5 cut(s) 424, 677, 727, 735, 1079
PdmI GAANNNNTTC 3 cut(s) 299, 727, 1117
PfeI GAWTC 6 cut(s) 137, 162, 835, 882, 1390, 1415
PkrI GCNGC 3 cut(s) 258, 1057, 1423
PleI GAGTC 2 cut(s) 1022, 1372
PpsI GAGTC 2 cut(s) 1022, 1372
PscI ACATGT 1 cut(s) 1562
PsiI TTATAA 1 cut(s) 1316
Psp1406I AACGTT 1 cut(s) 359
Psp6I CCWGG 3 cut(s) 380, 890, 1137
PspFI CCCAGC 1 cut(s) 1157
PspGI CCWGG 3 cut(s) 380, 890, 1137
PspN4I GGNNCC 4 cut(s) 175, 379, 386, 1230
PspPI GGNCC 1 cut(s) 1541
PstI CTGCAG 1 cut(s) 483
PsuI RGATCY 1 cut(s) 1228
RsaI GTAC 4 cut(s) 475, 515, 1024, 1481
RsaNI GTAC 4 cut(s) 474, 514, 1023, 1480
RseI CAYNNNNRTG 1 cut(s) 42
SaqAI TTAA 8 cut(s) 167, 270, 317, 362, 594, 705, 713, 1567
SatI GCNGC 3 cut(s) 257, 1056, 1422
Sau3AI GATC 3 cut(s) 1228, 1248, 1464
Sau96I GGNCC 1 cut(s) 1541
SchI GAGTC 2 cut(s) 1023, 1373
ScrFI CCNGG 4 cut(s) 277, 382, 892, 1139
SexAI ACCWGGT 1 cut(s) 1137
SfaNI GCATC 2 cut(s) 538, 946
SfcI CTRYAG 3 cut(s) 479, 750, 1018
Sfr274I CTCGAG 1 cut(s) 1108
SlaI CTCGAG 1 cut(s) 1108
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 3 cut(s) 704, 712, 1108
SmoI CTYRAG 3 cut(s) 704, 712, 1108
Sse9I AATT 5 cut(s) 310, 585, 810, 1087, 1318
SsiI CCGC 3 cut(s) 77, 147, 257
SspI AATATT 1 cut(s) 450
StyD4I CCNGG 4 cut(s) 275, 380, 890, 1137
StyI CCWWGG 1 cut(s) 1333
TaaI ACNGT 5 cut(s) 300, 469, 513, 820, 1203
TaiI ACGT 4 cut(s) 216, 362, 1054, 1226
TaqI TCGA 4 cut(s) 114, 1109, 1367, 1467
TasI AATT 5 cut(s) 310, 585, 810, 1087, 1318
TatI WGTACW 3 cut(s) 473, 513, 1479
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 6 cut(s) 137, 162, 835, 882, 1390, 1415
Tru1I TTAA 8 cut(s) 167, 270, 317, 362, 594, 705, 713, 1567
Tru9I TTAA 8 cut(s) 167, 270, 317, 362, 594, 705, 713, 1567
TscAI CASTG 5 cut(s) 483, 667, 823, 874, 1290
TseFI GTSAC 4 cut(s) 688, 843, 1219, 1550
TseI GCWGC 2 cut(s) 1055, 1421
Tsp45I GTSAC 4 cut(s) 688, 843, 1219, 1550
TspRI CASTG 5 cut(s) 483, 667, 823, 874, 1290
Vha464I CTTAAG 2 cut(s) 704, 712
XapI RAATTY 2 cut(s) 310, 810
XceI RCATGY 2 cut(s) 899, 1566
XhoI CTCGAG 1 cut(s) 1108
XmiI GTMKAC 1 cut(s) 1559
XmnI GAANNNNTTC 3 cut(s) 299, 727, 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.