Rh5CG402800

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
53663065 .. 53667102
4038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG402800.1

Sequence Viewer

Length: 1419 bp
ATGAAGAGTTGTTCTTTATATATCTCCTGCCGCCTATTATATTTAATGCCGGGTAATTTCATCTTCCTTATGGCTTATAATCCCTTTTTTTTTTTTTGTCTTCGTAGAAGATATTCACTTACCGGGTTTGCTGACCATACCAGGTTTCAGGTCAAGAAGAAACAGTTCTTTCAAAATTTCTTAACTATCATGTTGTTTGGGGTGATTGGCGTTTTCATTTCAACGTTAGTCATAACAGCTGGTGCCTGGTTCCTATTTCCTAAGTCGGGCTTCGTTGGCCTGAACGCACGAGACTATCTCGCTGTAGGAACAATATTTTCATCAACTGATACAGTCTGTACGCTGCAGGTTCTTCATCAAGATGAAACTCCTTTACTGTACAGCTTAGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTCCTATTCAATGCAGTTCAGAAGATTGATGTTAATAAGCTTAATAGCGGGATTGGACTGCGTGTCATTGGAGATTTCCTTTACCTGTTCTCAACAAGCACTGCTCTTGGAGTTGCATTCGGACTTGTGACAGCATATTCCCTTAAAACCTTATGCTTTGGAAGGCATTCAAGCATTCGGGAGGTTTCTTTAGTGGTTCTAATGGCCTATCTGTCTTACATGGTGGCTGAGCTGTTAGACCTGAGTGGAATCCTCACTGTTTTCTTCTGTGGGATTGTCATGTCACACTATGCTTGGCATAATGTCACTGAAAGTTCAAGAATCACAACCAGGCATGTATTTGCAATGATGTCATTTATTGCAGAAACATTCATATTTCTTTATGTCGGAATGGATGCTCTTGACATTGAGAAGTGGAAATTAACCAAGTTGAGTTTTGGGGCTTCAATGGGGATCTATAGTATGACACTCTTACTAATATTGCTTGGACGTGCTGCCTTTGTATTCCCTCTCTCTGCATTCTCCAATTACATGAATAGACGAGCCTCGAGAAGATGTTCACTTTCATTCAGACACCAGATAATCATATGGTGGGCTGGGCTAATAAGAGGAGCTGTCTCCATTGCTTTGGCTTTCAAACAGTTCACATACTCTGGGGTCACATTGGATCCAATCAATGCAATGATGATTACAAACACAATAATAGTTGTTCTCTTCAGTACAGTGGTCTTTGGCTTTCTGACGAAGCCACTTATAAGTTATCTGCTTCCCCATGTTGGAACTAAGCCCATCAGTCGCAACGTATCAAAGGACGTTGGGGAGGACTTAAACCTGCCTCTGCTCTCCTTCGATGAATCTACTGCTACCAATATAAGTCGTGCAAAGGATAATTTGTCTATGTTGATGGAGAGGCCTGTGTACGCGATACATTCTTACTGGAGGAGGTTCGATGACGCCTATATGAGACCCCTATTTGGGGGGCCGGCCAGTTAG

Protein Analysis

472

Amino Acids

53.05

Weight (kDa)

9.39

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 52 - 394 4.5e-47 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 78, 1181
Acc36I ACCTGC 2 cut(s) 337, 1266
AccB1I GGYRCC 1 cut(s) 242
AccII CGCG 1 cut(s) 1349
AciI CCGC 2 cut(s) 31, 474
AclI AACGTT 1 cut(s) 224
AclWI GGATC 3 cut(s) 887, 1088, 1101
AcoI YGGCCR 1 cut(s) 1410
AcsI RAATTY 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 1126
AcyI GRCGYC 1 cut(s) 1380
AfaI GTAC 4 cut(s) 340, 380, 1147, 1346
AfiI CCNNNNNNNGG 5 cut(s) 266, 1202, 1400, 1401, 1402
AgsI TTSAA 7 cut(s) 173, 222, 436, 597, 744, 873, 1063
AhdI GACNNNNNGTC 1 cut(s) 488
AjiI CACGTC 1 cut(s) 917
AjnI CCWGG 3 cut(s) 140, 245, 755
AluBI AGCT 5 cut(s) 239, 384, 466, 658, 1040
AluI AGCT 5 cut(s) 239, 384, 466, 658, 1040
Alw26I GTCTC 3 cut(s) 285, 1048, 1384
AlwI GGATC 3 cut(s) 887, 1088, 1101
Ama87I CYCGRG 1 cut(s) 973
AoxI GGCC 5 cut(s) 277, 630, 1337, 1406, 1410
ApeKI GCWGC 2 cut(s) 343, 920
ApoI RAATTY 1 cut(s) 175
Asp700I GAANNNNTTC 4 cut(s) 112, 164, 592, 982
AspS9I GGNCC 1 cut(s) 1406
AsuC2I CCSGG 2 cut(s) 51, 124
AsuHPI GGTGA 2 cut(s) 214, 418
AvaI CYCGRG 1 cut(s) 973
BamHI GGATCC 1 cut(s) 1093
BanI GGYRCC 1 cut(s) 242
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 330, 907
BccI CCATC 2 cut(s) 1223, 1324
BciT130I CCWGG 3 cut(s) 142, 247, 757
BcnI CCSGG 2 cut(s) 51, 124
BcoDI GTCTC 3 cut(s) 285, 1048, 1384
BfmI CTRYAG 3 cut(s) 303, 344, 883
BfuAI ACCTGC 2 cut(s) 337, 1266
BisI GCNGC 3 cut(s) 31, 344, 921
BlpI GCTNAGC 1 cut(s) 654
BlsI GCNGC 3 cut(s) 32, 345, 922
Bme1390I CCNGG 5 cut(s) 51, 124, 142, 247, 757
BmeRI GACNNNNNGTC 1 cut(s) 488
BmeT110I CYCGRG 1 cut(s) 973
BmgBI CACGTC 1 cut(s) 917
BmgT120I GGNCC 1 cut(s) 1406
BmiI GGNNCC 4 cut(s) 244, 251, 1095, 1407
BmrFI CCNGG 5 cut(s) 51, 124, 142, 247, 757
BmsI GCATC 2 cut(s) 403, 811
BpiI GAAGAC 1 cut(s) 92
BplI GAGNNNNNCTC 2 cut(s) 282, 314
BpmI CTGGAG 1 cut(s) 1384
Bpu1102I GCTNAGC 1 cut(s) 654
BpuMI CCSGG 2 cut(s) 51, 124
BsaHI GRCGYC 1 cut(s) 1380
BsaI GGTCTC 1 cut(s) 1384
Bsc4I CCNNNNNNNGG 5 cut(s) 266, 1202, 1400, 1401, 1402
Bse118I RCCGGY 1 cut(s) 1408
Bse1I ACTGG 2 cut(s) 1367, 1413
Bse3DI GCAATG 3 cut(s) 777, 1047, 1113
BseBI CCWGG 3 cut(s) 142, 247, 757
BseGI GGATG 1 cut(s) 826
BseLI CCNNNNNNNGG 5 cut(s) 266, 1202, 1400, 1401, 1402
BseMI GCAATG 3 cut(s) 777, 1047, 1113
BseMII CTCAG 2 cut(s) 645, 659
BseNI ACTGG 2 cut(s) 1367, 1413
BseRI GAGGAG 2 cut(s) 1050, 1381
BseXI GCAGC 2 cut(s) 330, 907
BseYI CCCAGC 1 cut(s) 1022
Bsh1236I CGCG 1 cut(s) 1349
BshFI GGCC 5 cut(s) 279, 632, 1339, 1408, 1412
BshNI GGYRCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 973
BsiSI CCGG 3 cut(s) 50, 123, 1409
BslI CCNNNNNNNGG 5 cut(s) 266, 1202, 1400, 1401, 1402
BsmAI GTCTC 3 cut(s) 285, 1048, 1384
BsmI GAATGC 4 cut(s) 542, 592, 600, 944
BsnI GGCC 5 cut(s) 279, 632, 1339, 1408, 1412
Bso31I GGTCTC 1 cut(s) 1384
BsoBI CYCGRG 1 cut(s) 973
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 2 cut(s) 879, 1093
Bsp1720I GCTNAGC 1 cut(s) 654
BspACI CCGC 2 cut(s) 31, 474
BspANI GGCC 5 cut(s) 279, 632, 1339, 1408, 1412
BspCNI CTCAG 2 cut(s) 646, 660
BspFNI CGCG 1 cut(s) 1349
BspLI GGNNCC 4 cut(s) 244, 251, 1095, 1407
BspMAI CTGCAG 1 cut(s) 348
BspMI ACCTGC 2 cut(s) 337, 1266
BspPI GGATC 3 cut(s) 887, 1088, 1101
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 1384
BsrDI GCAATG 3 cut(s) 777, 1047, 1113
BsrFI RCCGGY 1 cut(s) 1408
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 2 cut(s) 1367, 1413
BssAI RCCGGY 1 cut(s) 1408
BssMI GATC 2 cut(s) 879, 1093
BssNI GRCGYC 1 cut(s) 1380
BssSI CACGAG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 3 cut(s) 142, 247, 757
Bst4CI ACNGT 6 cut(s) 165, 334, 378, 685, 1068, 1150
Bst6I CTCTTC 1 cut(s) 1145
BstACI GRCGYC 1 cut(s) 1380
BstAUI TGTACA 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 1410
BstDEI CTNAG 5 cut(s) 261, 385, 654, 668, 1209
BstF5I GGATG 1 cut(s) 826
BstFNI CGCG 1 cut(s) 1349
BstKTI GATC 2 cut(s) 882, 1096
BstMAI GTCTC 3 cut(s) 285, 1048, 1384
BstMBI GATC 2 cut(s) 879, 1093
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstNI CCWGG 3 cut(s) 142, 247, 757
BstNSI RCATGY 1 cut(s) 764
BstSCI CCNGG 5 cut(s) 49, 122, 140, 245, 755
BstSFI CTRYAG 3 cut(s) 303, 344, 883
BstUI CGCG 1 cut(s) 1349
BstV1I GCAGC 2 cut(s) 330, 907
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 879, 1093
BstXI CCANNNNNNTGG 1 cut(s) 1054
BstYI RGATCY 2 cut(s) 879, 1093
BsuRI GGCC 5 cut(s) 279, 632, 1339, 1408, 1412
BtrI CACGTC 1 cut(s) 917
BtsCI GGATG 1 cut(s) 826
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 4 cut(s) 525, 681, 732, 1155
BveI ACCTGC 2 cut(s) 337, 1266
Cac8I GCNNGC 1 cut(s) 1410
Cfr10I RCCGGY 1 cut(s) 1408
Cfr13I GGNCC 1 cut(s) 1406
CseI GACGC 1 cut(s) 1388
CsiI ACCWGGT 1 cut(s) 140
Csp6I GTAC 4 cut(s) 339, 379, 1146, 1345
CviAII CATG 6 cut(s) 190, 646, 706, 761, 958, 1199
CviQI GTAC 4 cut(s) 339, 379, 1146, 1345
DdeI CTNAG 5 cut(s) 261, 385, 654, 668, 1209
DpnI GATC 2 cut(s) 881, 1095
DpnII GATC 2 cut(s) 879, 1093
DriI GACNNNNNGTC 1 cut(s) 488
EaeI YGGCCR 1 cut(s) 1410
Eam1104I CTCTTC 1 cut(s) 1145
Eam1105I GACNNNNNGTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 1145
Eco147I AGGCCT 1 cut(s) 1339
Eco31I GGTCTC 1 cut(s) 1384
Eco57I CTGAAG 1 cut(s) 1126
Eco88I CYCGRG 1 cut(s) 973
EcoRII CCWGG 3 cut(s) 140, 245, 755
FaeI CATG 6 cut(s) 193, 649, 709, 764, 961, 1202
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 6 cut(s) 189, 645, 705, 760, 957, 1198
FauI CCCGC 1 cut(s) 467
FauNDI CATATG 1 cut(s) 1013
Fnu4HI GCNGC 3 cut(s) 31, 344, 921
FokI GGATG 1 cut(s) 833
FseI GGCCGGCC 1 cut(s) 1412
Fsp4HI GCNGC 3 cut(s) 31, 344, 921
GluI GCNGC 3 cut(s) 31, 344, 921
GsaI CCCAGC 1 cut(s) 1026
GsuI CTGGAG 1 cut(s) 1384
HaeIII GGCC 5 cut(s) 279, 632, 1339, 1408, 1412
HapII CCGG 3 cut(s) 50, 123, 1409
HgaI GACGC 1 cut(s) 1388
Hin1I GRCGYC 1 cut(s) 1380
Hin1II CATG 6 cut(s) 193, 649, 709, 764, 961, 1202
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 3 cut(s) 675, 747, 1280
HpaII CCGG 3 cut(s) 50, 123, 1409
HphI GGTGA 2 cut(s) 214, 418
Hpy166II GTNNAC 3 cut(s) 986, 1071, 1345
Hpy188I TCNGA 5 cut(s) 447, 548, 815, 998, 1167
Hpy188III TCNNGA 6 cut(s) 154, 359, 605, 744, 827, 975
Hpy8I GTNNAC 3 cut(s) 986, 1071, 1345
HpyAV CCTTC 3 cut(s) 392, 582, 1282
HpyCH4III ACNGT 6 cut(s) 165, 334, 378, 685, 1068, 1150
HpyCH4IV ACGT 4 cut(s) 224, 916, 1227, 1239
HpyCH4V TGCA 9 cut(s) 346, 416, 440, 542, 770, 788, 944, 1106, 1307
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
HpyF3I CTNAG 5 cut(s) 261, 385, 654, 668, 1209
HpySE526I ACGT 4 cut(s) 224, 916, 1227, 1239
Hsp92I GRCGYC 1 cut(s) 1380
Hsp92II CATG 6 cut(s) 193, 649, 709, 764, 961, 1202
KroI GCCGGC 1 cut(s) 1408
KroNI GCCGGC 1 cut(s) 1410
Kzo9I GATC 2 cut(s) 879, 1093
LmnI GCTCC 1 cut(s) 1037
Lsp1109I GCAGC 2 cut(s) 330, 907
LweI GCATC 2 cut(s) 403, 811
MabI ACCWGGT 1 cut(s) 140
MaeII ACGT 4 cut(s) 224, 916, 1227, 1239
MaeIII GTNAC 4 cut(s) 553, 708, 730, 1084
MalI GATC 2 cut(s) 881, 1095
MboI GATC 2 cut(s) 879, 1093
MflI RGATCY 2 cut(s) 879, 1093
MluCI AATT 5 cut(s) 55, 175, 845, 952, 1315
MmeI TCCRAC 2 cut(s) 793, 1183
MroNI GCCGGC 1 cut(s) 1408
MroXI GAANNNNTTC 4 cut(s) 112, 164, 592, 982
MseI TTAA 7 cut(s) 44, 182, 459, 468, 570, 848, 1253
MslI CAYNNNNRTG 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 3 cut(s) 50, 123, 1409
MspR9I CCNGG 5 cut(s) 51, 124, 142, 247, 757
Mva1269I GAATGC 4 cut(s) 542, 592, 600, 944
MvaI CCWGG 3 cut(s) 142, 247, 757
MvnI CGCG 1 cut(s) 1349
MwoI GCNNNNNNNGC 1 cut(s) 276
NaeI GCCGGC 1 cut(s) 1410
NciI CCSGG 2 cut(s) 51, 124
NdeI CATATG 1 cut(s) 1013
NdeII GATC 2 cut(s) 879, 1093
NgoMIV GCCGGC 1 cut(s) 1408
NlaIII CATG 6 cut(s) 193, 649, 709, 764, 961, 1202
NlaIV GGNNCC 4 cut(s) 244, 251, 1095, 1407
NmuCI GTSAC 4 cut(s) 553, 708, 730, 1084
NspI RCATGY 1 cut(s) 764
PaeR7I CTCGAG 1 cut(s) 973
PceI AGGCCT 1 cut(s) 1339
PctI GAATGC 4 cut(s) 542, 592, 600, 944
PdiI GCCGGC 1 cut(s) 1410
PdmI GAANNNNTTC 4 cut(s) 112, 164, 592, 982
PfeI GAWTC 3 cut(s) 675, 747, 1280
PkrI GCNGC 3 cut(s) 32, 345, 922
PsiI TTATAA 2 cut(s) 78, 1181
Psp1406I AACGTT 1 cut(s) 224
Psp6I CCWGG 3 cut(s) 140, 245, 755
PspFI CCCAGC 1 cut(s) 1022
PspGI CCWGG 3 cut(s) 140, 245, 755
PspN4I GGNNCC 4 cut(s) 244, 251, 1095, 1407
PspPI GGNCC 1 cut(s) 1406
PstI CTGCAG 1 cut(s) 348
PsuI RGATCY 2 cut(s) 879, 1093
PvuII CAGCTG 1 cut(s) 239
RigI GGCCGGCC 1 cut(s) 1412
RsaI GTAC 4 cut(s) 340, 380, 1147, 1346
RsaNI GTAC 4 cut(s) 339, 379, 1146, 1345
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 7 cut(s) 44, 182, 459, 468, 570, 848, 1253
SatI GCNGC 3 cut(s) 31, 344, 921
Sau3AI GATC 2 cut(s) 879, 1093
Sau96I GGNCC 1 cut(s) 1406
ScrFI CCNGG 5 cut(s) 51, 124, 142, 247, 757
SexAI ACCWGGT 1 cut(s) 140
SfaNI GCATC 2 cut(s) 403, 811
SfcI CTRYAG 3 cut(s) 303, 344, 883
Sfr274I CTCGAG 1 cut(s) 973
SlaI CTCGAG 1 cut(s) 973
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 973
SmoI CTYRAG 1 cut(s) 973
Sse9I AATT 5 cut(s) 55, 175, 845, 952, 1315
SseBI AGGCCT 1 cut(s) 1339
SsiI CCGC 2 cut(s) 31, 474
SspI AATATT 2 cut(s) 315, 906
StuI AGGCCT 1 cut(s) 1339
StyD4I CCNGG 5 cut(s) 49, 122, 140, 245, 755
TaaI ACNGT 6 cut(s) 165, 334, 378, 685, 1068, 1150
TaiI ACGT 4 cut(s) 227, 919, 1230, 1242
TaqI TCGA 3 cut(s) 974, 1275, 1374
TasI AATT 5 cut(s) 55, 175, 845, 952, 1315
TatI WGTACW 2 cut(s) 378, 1145
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 3 cut(s) 675, 747, 1280
Tru1I TTAA 7 cut(s) 44, 182, 459, 468, 570, 848, 1253
Tru9I TTAA 7 cut(s) 44, 182, 459, 468, 570, 848, 1253
TscAI CASTG 4 cut(s) 532, 688, 739, 1155
TseFI GTSAC 4 cut(s) 553, 708, 730, 1084
TseI GCWGC 2 cut(s) 343, 920
Tsp45I GTSAC 4 cut(s) 553, 708, 730, 1084
TspRI CASTG 4 cut(s) 532, 688, 739, 1155
XapI RAATTY 1 cut(s) 175
XceI RCATGY 1 cut(s) 764
XhoI CTCGAG 1 cut(s) 973
XmnI GAANNNNTTC 4 cut(s) 112, 164, 592, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.