Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003084

Physical Location & Seq

Genomic Coordinates Reverse (-)

3885942 .. 3890270

Gene Structure 4329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG056800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGAATCCATCACCGCCCTTCTTTTGGTCAGTAAATGCATACCCTTTATGCATAAACACACACACACATGCACACACACACACACACACACTCAAACAGAATTCTGGGTTTCTTTCTTTTAATTTGTTAAGTTTACAGGGTTTGATTGCTGGACTAGTGGTGTTGCTGGTGACTCAGTTCGAGAGTTCACAAATTTTGGTCTTCAATGAGGACTTGTTCTTCCTTTATTTACTTCCTCCAATCATTTTCAATGCTGGTTTTCAGGTCAAGAAAAAGCAATTTTTCAAGAATTTCACAACAATTTTGCTCTTTGGTATAGTTGGTACAGTAATTTCTTTCTGCCTCATATCACTAGGTGCCTTTTTAGTTTTCAGTAGATTTGGTTTCACAACTCTGACCCTTCGAGATTACCTAGCTGTTGGTGCCATATTGTCAGCAACGGATTCAGTTTGTACACTGCAGGTTCTTAGTCAAGATGACACTCCCTTTCTCTACAGTGTCGTATTCGGGGAGGGAGTAGTGAATGATGCTACCTCTATCGTGCTCTTCAATGCAGTACAATCACTAGATGTGAGGAACGTCAGTGGTCTTACAGCCTTGAAATTGTTAGGCACTTTTCTTTACCTCTTCTTCACCAGCACTCTTCTTGGTATAGCAGCTGGTCTTATGAGCGCTTTTATCATAAAAACGCTTTACTTTGGAAGGCATTCTACAGATCGTGAAGTTGCTCTCATGATGCTTATGGCTTATTTGTCATACATGTTGGCTGAGCTTTTGAGTCTCAGTGGAATTTTGACAGTTTTCTTTTGTGGCATAGTAATGTCACATTACACATGGCACAATGTTACAGAAAGCTCAAGGATAACAACCAAGCATGCATTTGCAACAATGTCATTCATTTCAGAAACCTTTATATTCCTCTATGTTGGTATGGATGCCATGGACATTGACAAATGGAAATCCAGCAAAGCAAGTCCAGGAACTTCAATTGGTGTCAGTTCGATTTTGTTTGCACTTGTATTAATCGGAAGGGCAGCATTCATATTCCCGATCGCAAACATTTCAAATTGCTGCAAGAAGAGAGAAAGCACTAAAATCAAATTCCGTCAACAGTTCATAATGTGGTGGGCAGGCCTAATGAGAGGTGCAGTTACTATTGCTTTGTCATACAACCAATTTTCAGAGTCCACGACGTCATCAGTGCAAGATAATGCACGGATGATCACCTCCACAATAATTGTTGTTCTATTCAGCACAGTGGTATTTGGCTCGATAACAAAGCCGTTAATTGAAGCTGTACTGCCGAGACATGCAAACCACAATATTTCGGATGCAACTGATAGTCCAAGTCTAGAAGACTTGAGGCTATTGTTCCTAGAAACCGGTGATCCAAGCGAAGAAGGCAACAGTCAGCCAAGTCGAAGGAAAAGTAGCTTCAGGTTGCTGATGACTCATACGACTTATACTGTGCACCATTTTTGGAGAAAATTTGATGACAAGTTTATGAGACCGGTGTTTGGTGGACGGGGATTTGTTCCCTTCGTTCCTGGTTCACCAAGTGGTGCAATTGAAGAAGAACAAACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

529

Amino Acids

58.81

Weight (kDa)

8.43

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	43 - 431	6.7e-59	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55470
fragaria_vesca	FvH4_3g30310 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300
malus_domestica	MD04G1209700.v1.1 MD11G1207200.v1.1 MD12G1224200.v1.1
prunus_persica	Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.6G330600_v2.0.a1
pyrus_communis	pycom04g18580 pycom12g20970
rosa_chinensis	RchiOBHm_Chr3g0454041 RchiOBHm_Chr5g0056181
rosa_laevigata	RLG00000025487 RLG00000035061
rosa_multiflora	Rmu_sc0000680.1_g000026
rosa_roxburghii	Rroxscaffold_1G00024110 Rroxscaffold_6G00430830
rosa_rugosa	Rorug02G0652500 Rorug05G0297800
rosa_samantha	Rh3AG055200 Rh3BG056800 Rh3CG056000 Rh3DG057300 Rh5AG369000 Rh5BG380000 Rh5CG402800 Rh5DG393000
rosa_wichuraiana	Rw0G004440 Rw0G012680 Rw3G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1196
Acc36I	ACCTGC	1 cut(s)	451
AccB1I	GGYRCC	2 cut(s)	356, 422
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	1382
AcsI	RAATTY	6 cut(s)	100, 192, 289, 789, 1100, 1487
AcuI	CTGAAG	1 cut(s)	1420
AcyI	GRCGYC	1 cut(s)	1193
AdeI	CACNNNGTG	2 cut(s)	356, 1559
AfaI	GTAC	4 cut(s)	325, 454, 558, 1299
AfeI	AGCGCT	1 cut(s)	673
AfiI	CCNNNNNNNGG	2 cut(s)	24, 1517
AflIII	ACRYGT	1 cut(s)	759
AgeI	ACCGGT	2 cut(s)	1382, 1510
AgsI	TTSAA	9 cut(s)	205, 250, 286, 550, 601, 987, 1065, 1292, 1571
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	976, 1546
AluBI	AGCT	6 cut(s)	416, 659, 772, 855, 1295, 1434
AluI	AGCT	6 cut(s)	416, 659, 772, 855, 1295, 1434
Alw21I	GWGCWC	2 cut(s)	546, 1473
Alw26I	GTCTC	3 cut(s)	785, 1300, 1501
Alw44I	GTGCAC	1 cut(s)	1469
AlwI	GGATC	1 cut(s)	1382
Aor51HI	AGCGCT	1 cut(s)	673
AoxI	GGCC	1 cut(s)	1132
ApaLI	GTGCAC	1 cut(s)	1469
ApeKI	GCWGC	3 cut(s)	656, 1034, 1071
ApoI	RAATTY	6 cut(s)	100, 192, 289, 789, 1100, 1487
AseI	ATTAAT	1 cut(s)	1022
AsiGI	ACCGGT	2 cut(s)	1382, 1510
Asp700I	GAANNNNTTC	1 cut(s)	706
AspLEI	GCGC	1 cut(s)	674
AsuHPI	GGTGA	6 cut(s)	3, 181, 625, 1216, 1397, 1545
BaeGI	GKGCMC	1 cut(s)	1473
BanI	GGYRCC	2 cut(s)	356, 422
BarI	GAAGNNNNNNTAC	2 cut(s)	694, 726
BbsI	GAAGAC	2 cut(s)	193, 1362
Bbv12I	GWGCWC	2 cut(s)	546, 1473
BbvI	GCAGC	3 cut(s)	668, 1046, 1058
BccI	CCATC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	1267
BciT130I	CCWGG	2 cut(s)	978, 1548
BclI	TGATCA	1 cut(s)	1221
BcoDI	GTCTC	3 cut(s)	785, 1300, 1501
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	6 cut(s)	155, 353, 413, 566, 1352, 1376
BfmI	CTRYAG	3 cut(s)	458, 493, 711
BfoI	RGCGCY	1 cut(s)	675
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	3 cut(s)	657, 1035, 1072
BlpI	GCTNAGC	1 cut(s)	768
BlsI	GCNGC	3 cut(s)	658, 1036, 1073
Bme1390I	CCNGG	2 cut(s)	978, 1548
BmiI	GGNNCC	2 cut(s)	358, 424
BmrFI	CCNGG	2 cut(s)	978, 1548
BmsI	GCATC	4 cut(s)	517, 726, 925, 1321
BpiI	GAAGAC	2 cut(s)	193, 1362
Bpu1102I	GCTNAGC	1 cut(s)	768
BpuEI	CTTGAG	2 cut(s)	841, 1381
BsaHI	GRCGYC	1 cut(s)	1193
BsaI	GGTCTC	1 cut(s)	1501
BsaJI	CCNNGG	1 cut(s)	939
BsaWI	WCCGGW	2 cut(s)	1382, 1510
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 1517
Bse118I	RCCGGY	2 cut(s)	1382, 1510
BseBI	CCWGG	2 cut(s)	978, 1548
BseDI	CCNNGG	1 cut(s)	939
BseGI	GGATG	3 cut(s)	940, 1224, 1336
BseLI	CCNNNNNNNGG	2 cut(s)	24, 1517
BseMII	CTCAG	3 cut(s)	188, 759, 796
BseSI	GKGCMC	1 cut(s)	1473
BseXI	GCAGC	3 cut(s)	668, 1046, 1058
BsgI	GTGCAG	1 cut(s)	1167
Bsh1285I	CGRYCG	1 cut(s)	1053
BshFI	GGCC	1 cut(s)	1134
BshNI	GGYRCC	2 cut(s)	356, 422
BshTI	ACCGGT	2 cut(s)	1382, 1510
BsiEI	CGRYCG	1 cut(s)	1053
BsiHKAI	GWGCWC	2 cut(s)	546, 1473
BsiSI	CCGG	2 cut(s)	1383, 1511
BslI	CCNNNNNNNGG	2 cut(s)	24, 1517
BsmAI	GTCTC	3 cut(s)	785, 1300, 1501
BsmI	GAATGC	2 cut(s)	706, 1037
BsnI	GGCC	1 cut(s)	1134
Bso31I	GGTCTC	1 cut(s)	1501
Bsp1286I	GDGCHC	2 cut(s)	546, 1473
Bsp1407I	TGTACA	1 cut(s)	452
Bsp143I	GATC	4 cut(s)	715, 1050, 1221, 1387
Bsp1720I	GCTNAGC	1 cut(s)	768
Bsp19I	CCATGG	1 cut(s)	939
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	1134
BspCNI	CTCAG	3 cut(s)	187, 760, 795
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	2 cut(s)	358, 424
BspMAI	CTGCAG	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	1382
BspQI	GCTCTTC	1 cut(s)	551
BspT107I	GGYRCC	2 cut(s)	356, 422
BspTNI	GGTCTC	1 cut(s)	1501
BsrFI	RCCGGY	2 cut(s)	1382, 1510
BsrGI	TGTACA	1 cut(s)	452
BssAI	RCCGGY	2 cut(s)	1382, 1510
BssECI	CCNNGG	1 cut(s)	939
BssMI	GATC	4 cut(s)	715, 1050, 1221, 1387
BssNI	GRCGYC	1 cut(s)	1193
BssT1I	CCWWGG	1 cut(s)	939
Bst2UI	CCWGG	2 cut(s)	978, 1548
Bst4CI	ACNGT	7 cut(s)	328, 497, 799, 1113, 1258, 1409, 1468
Bst6I	CTCTTC	4 cut(s)	551, 632, 648, 1073
BstACI	GRCGYC	1 cut(s)	1193
BstAUI	TGTACA	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	876, 1132
BstDEI	CTNAG	4 cut(s)	174, 467, 768, 782
BstDSI	CCRYGG	1 cut(s)	939
BstF5I	GGATG	3 cut(s)	940, 1224, 1336
BstH2I	RGCGCY	1 cut(s)	675
BstHHI	GCGC	1 cut(s)	674
BstKTI	GATC	4 cut(s)	718, 1053, 1224, 1390
BstMAI	GTCTC	3 cut(s)	785, 1300, 1501
BstMBI	GATC	4 cut(s)	715, 1050, 1221, 1387
BstMCI	CGRYCG	1 cut(s)	1053
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 1401
BstNI	CCWGG	2 cut(s)	978, 1548
BstNSI	RCATGY	4 cut(s)	71, 763, 878, 1313
BstSCI	CCNGG	2 cut(s)	976, 1546
BstSFI	CTRYAG	3 cut(s)	458, 493, 711
BstSLI	GKGCMC	1 cut(s)	1473
BstV1I	GCAGC	3 cut(s)	668, 1046, 1058
BstV2I	GAAGAC	2 cut(s)	193, 1362
BsuRI	GGCC	1 cut(s)	1134
BtgI	CCRYGG	1 cut(s)	939
BtsCI	GGATG	3 cut(s)	940, 1224, 1336
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	6 cut(s)	455, 502, 589, 790, 1206, 1263
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	2 cut(s)	876, 1132
CciI	TCATGA	1 cut(s)	732
CfoI	GCGC	1 cut(s)	674
Cfr10I	RCCGGY	2 cut(s)	1382, 1510
Csp6I	GTAC	4 cut(s)	324, 453, 557, 1298
CspAI	ACCGGT	2 cut(s)	1382, 1510
CspCI	CAANNNNNGTGG	2 cut(s)	1219, 1254
CviAII	CATG	7 cut(s)	68, 733, 760, 834, 875, 940, 1310
CviQI	GTAC	4 cut(s)	324, 453, 557, 1298
DdeI	CTNAG	4 cut(s)	174, 467, 768, 782
DpnI	GATC	4 cut(s)	717, 1052, 1223, 1389
DpnII	GATC	4 cut(s)	715, 1050, 1221, 1387
DraIII	CACNNNGTG	2 cut(s)	356, 1559
Eam1104I	CTCTTC	4 cut(s)	551, 632, 648, 1073
EarI	CTCTTC	4 cut(s)	551, 632, 648, 1073
Eco130I	CCWWGG	1 cut(s)	939
Eco147I	AGGCCT	1 cut(s)	1134
Eco31I	GGTCTC	1 cut(s)	1501
Eco47III	AGCGCT	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	1420
EcoRI	GAATTC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	976, 1546
EcoT14I	CCWWGG	1 cut(s)	939
EcoT22I	ATGCAT	3 cut(s)	40, 53, 880
ErhI	CCWWGG	1 cut(s)	939
FaeI	CATG	7 cut(s)	71, 736, 763, 837, 878, 943, 1313
FatI	CATG	7 cut(s)	67, 732, 759, 833, 874, 939, 1309
FbaI	TGATCA	1 cut(s)	1221
Fnu4HI	GCNGC	3 cut(s)	657, 1035, 1072
FokI	GGATG	3 cut(s)	947, 1231, 1343
Fsp4HI	GCNGC	3 cut(s)	657, 1035, 1072
FspBI	CTAG	6 cut(s)	155, 353, 413, 566, 1352, 1376
GlaI	GCGC	1 cut(s)	673
GluI	GCNGC	3 cut(s)	657, 1035, 1072
HaeII	RGCGCY	1 cut(s)	675
HaeIII	GGCC	1 cut(s)	1134
HapII	CCGG	2 cut(s)	1383, 1511
HhaI	GCGC	1 cut(s)	674
Hin1I	GRCGYC	1 cut(s)	1193
Hin1II	CATG	7 cut(s)	71, 736, 763, 837, 878, 943, 1313
Hin6I	GCGC	1 cut(s)	672
HinP1I	GCGC	1 cut(s)	672
HincII	GTYRAC	1 cut(s)	1109
HindII	GTYRAC	1 cut(s)	1109
HinfI	GANTC	6 cut(s)	4, 172, 443, 778, 1184, 1450
HpaII	CCGG	2 cut(s)	1383, 1511
HphI	GGTGA	6 cut(s)	3, 181, 625, 1216, 1397, 1545
Hpy166II	GTNNAC	8 cut(s)	134, 188, 455, 1109, 1188, 1471, 1523, 1553
Hpy188I	TCNGA	5 cut(s)	396, 904, 1028, 1183, 1330
Hpy188III	TCNNGA	9 cut(s)	181, 268, 286, 404, 473, 719, 733, 1048, 1352
Hpy8I	GTNNAC	8 cut(s)	134, 188, 455, 1109, 1188, 1471, 1523, 1553
Hpy99I	CGWCG	1 cut(s)	1195
HpyAV	CCTTC	7 cut(s)	28, 410, 696, 1023, 1394, 1416, 1549
HpyCH4III	ACNGT	7 cut(s)	328, 497, 799, 1113, 1258, 1409, 1468
HpyCH4IV	ACGT	2 cut(s)	579, 1193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 1401
HpyF3I	CTNAG	4 cut(s)	174, 467, 768, 782
HpySE526I	ACGT	2 cut(s)	579, 1193
Hsp92I	GRCGYC	1 cut(s)	1193
Hsp92II	CATG	7 cut(s)	71, 736, 763, 837, 878, 943, 1313
HspAI	GCGC	1 cut(s)	672
Ksp22I	TGATCA	1 cut(s)	1221
Kzo9I	GATC	4 cut(s)	715, 1050, 1221, 1387
LguI	GCTCTTC	1 cut(s)	551
Lsp1109I	GCAGC	3 cut(s)	668, 1046, 1058
LweI	GCATC	4 cut(s)	517, 726, 925, 1321
MaeI	CTAG	6 cut(s)	155, 353, 413, 566, 1352, 1376
MaeII	ACGT	2 cut(s)	579, 1193
MaeIII	GTNAC	4 cut(s)	169, 822, 844, 1150
MalI	GATC	4 cut(s)	717, 1052, 1223, 1389
MboI	GATC	4 cut(s)	715, 1050, 1221, 1387
MfeI	CAATTG	2 cut(s)	987, 1566
MhlI	GDGCHC	2 cut(s)	546, 1473
MlyI	GAGTC	4 cut(s)	166, 787, 1193, 1444
Mph1103I	ATGCAT	3 cut(s)	40, 53, 880
MroXI	GAANNNNTTC	1 cut(s)	706
MseI	TTAA	4 cut(s)	120, 128, 1022, 1286
MslI	CAYNNNNRTG	2 cut(s)	66, 818
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	2 cut(s)	1383, 1511
MspR9I	CCNGG	2 cut(s)	978, 1548
MunI	CAATTG	2 cut(s)	987, 1566
Mva1269I	GAATGC	2 cut(s)	706, 1037
MvaI	CCWGG	2 cut(s)	978, 1548
MwoI	GCNNNNNNNGC	2 cut(s)	422, 1401
NcoI	CCATGG	1 cut(s)	939
NdeII	GATC	4 cut(s)	715, 1050, 1221, 1387
NlaIII	CATG	7 cut(s)	71, 736, 763, 837, 878, 943, 1313
NlaIV	GGNNCC	2 cut(s)	358, 424
NmeAIII	GCCGAG	1 cut(s)	1329
NmuCI	GTSAC	2 cut(s)	169, 822
NsiI	ATGCAT	3 cut(s)	40, 53, 880
NspI	RCATGY	4 cut(s)	71, 763, 878, 1313
PaeI	GCATGC	1 cut(s)	878
PagI	TCATGA	1 cut(s)	732
PceI	AGGCCT	1 cut(s)	1134
PciI	ACATGT	1 cut(s)	759
PciSI	GCTCTTC	1 cut(s)	551
PctI	GAATGC	2 cut(s)	706, 1037
PdmI	GAANNNNTTC	1 cut(s)	706
PfeI	GAWTC	2 cut(s)	4, 443
PfoI	TCCNGGA	1 cut(s)	976
PinAI	ACCGGT	2 cut(s)	1382, 1510
PkrI	GCNGC	3 cut(s)	658, 1036, 1073
Ple19I	CGATCG	1 cut(s)	1053
PleI	GAGTC	4 cut(s)	166, 786, 1192, 1444
PpsI	GAGTC	4 cut(s)	166, 786, 1192, 1444
PscI	ACATGT	1 cut(s)	759
PshBI	ATTAAT	1 cut(s)	1022
Psp6I	CCWGG	2 cut(s)	976, 1546
PspGI	CCWGG	2 cut(s)	976, 1546
PspN4I	GGNNCC	2 cut(s)	358, 424
PstI	CTGCAG	1 cut(s)	462
PvuI	CGATCG	1 cut(s)	1053
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	4 cut(s)	325, 454, 558, 1299
RsaNI	GTAC	4 cut(s)	324, 453, 557, 1298
RseI	CAYNNNNRTG	2 cut(s)	66, 818
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	4 cut(s)	120, 128, 1022, 1286
SatI	GCNGC	3 cut(s)	657, 1035, 1072
Sau3AI	GATC	4 cut(s)	715, 1050, 1221, 1387
SchI	GAGTC	4 cut(s)	166, 787, 1193, 1444
ScrFI	CCNGG	2 cut(s)	978, 1548
SduI	GDGCHC	2 cut(s)	546, 1473
SfaNI	GCATC	4 cut(s)	517, 726, 925, 1321
SfcI	CTRYAG	3 cut(s)	458, 493, 711
SmiMI	CAYNNNNRTG	2 cut(s)	66, 818
SmlI	CTYRAG	2 cut(s)	856, 1360
SmoI	CTYRAG	2 cut(s)	856, 1360
SpeI	ACTAGT	1 cut(s)	154
SphI	GCATGC	1 cut(s)	878
SseBI	AGGCCT	1 cut(s)	1134
SsiI	CCGC	1 cut(s)	14
SspI	AATATT	1 cut(s)	1324
SspMI	CTAG	6 cut(s)	155, 353, 413, 566, 1352, 1376
StuI	AGGCCT	1 cut(s)	1134
StyD4I	CCNGG	2 cut(s)	976, 1546
StyI	CCWWGG	1 cut(s)	939
TaaI	ACNGT	7 cut(s)	328, 497, 799, 1113, 1258, 1409, 1468
TaiI	ACGT	2 cut(s)	582, 1196
TaqI	TCGA	5 cut(s)	180, 403, 1001, 1271, 1420
TatI	WGTACW	3 cut(s)	452, 556, 1297
TfiI	GAWTC	2 cut(s)	4, 443
Tru1I	TTAA	4 cut(s)	120, 128, 1022, 1286
Tru9I	TTAA	4 cut(s)	120, 128, 1022, 1286
TscAI	CASTG	6 cut(s)	462, 502, 589, 790, 1206, 1263
TseFI	GTSAC	2 cut(s)	169, 822
TseI	GCWGC	3 cut(s)	656, 1034, 1071
Tsp45I	GTSAC	2 cut(s)	169, 822
TspDTI	ATGAA	4 cut(s)	17, 886, 1030, 1105
TspGWI	ACGGA	3 cut(s)	455, 1094, 1231
TspRI	CASTG	6 cut(s)	462, 502, 589, 790, 1206, 1263
VneI	GTGCAC	1 cut(s)	1469
VspI	ATTAAT	1 cut(s)	1022
XapI	RAATTY	6 cut(s)	100, 192, 289, 789, 1100, 1487
XbaI	TCTAGA	1 cut(s)	1351
XceI	RCATGY	4 cut(s)	71, 763, 878, 1313
XmnI	GAANNNNTTC	1 cut(s)	706
XspI	CTAG	6 cut(s)	155, 353, 413, 566, 1352, 1376
ZraI	GACGTC	1 cut(s)	1194
Zsp2I	ATGCAT	3 cut(s)	40, 53, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.