RLG00000035061

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
60048374 .. 60052016
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035061

Sequence Viewer

Length: 1575 bp
ATGGCAGAAATATATGATATCGCAAAGAACTTAGCTCATGACCATGCTCAGGTGGTACCAATCTCACTTTTTGTGGCGGTTCTCTGTATTTGCTTAGTCGTCGGACACTTGCTTGAAGAAAATCGATGGGTTAATGAATCCATTACCGCCATTTTCATCGGACTGCTAACTGGGATCATAATCTTGCTCGTGAGCAAGGGGAAAAGTTCTCACATTCTGACATTTAATGAAGAGTTGTTCTTTATATATCTCCTGCCGCCTATTATATTTAATGCCGGGTTTCAGGTCAAGAAGAAACAGTTCTTTCAAAATTTCTTAACTATCATGTTGTTTGGGGTGATTGGCGTTTTCATTTCAACGTTAGTCTTAACAGCTGGTGCCTGGTTCCTATTTCCTAAGTTGGGCTTCGTTGGCCTGAATGCACGAGACTATCTCGCTGTAGGAACAATATTCTCATCAACTGATACAGTATGTACACTGCAGGTTCTGCATCAAGATGAAACTCCTTTACTGTACAGCTTAGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTCCTATTCAATGCAGTTCAGAAGATTGATGTTAATAAGCTTAATAGTGGGATTGGACTGCATGTTATTGGAGATTTCCTTTACCTGTTCTTAACAAGCACTGCTCTTGGAGTTGCATTCGGACTTGTGACAGCATATTCCCTTAAAACCTTATGCTTTGGAAGGCATTCAAGCATTCGGGAGGTTTCTTTAGTGGTTCTAATGGCCTATCTGTCTTACATGGTGGCTGAGCTGTTAGACCTGAGTGGAATCCTCACTGTTTTCTTCTGTGGGATTGTCATGTCACACTATGCTTGGCATAATGTCACTGAAAGTTCAAGAATCACAACCAGGCATGTATTTGCAATGATGTCATTTATTGCAGAAACATTCATATTTCTTTATGTCGGAATGGATGCTCTTGACATTGAGAAGTGGAAAATTACCAAGTTGAGTTTTGGGGATTCAATGGGCATCTATAGTATGACACTCTTACTAATATTGCTTGGACGTGCTGCCTTTGTATTCCCTCTCTCTGCATTCTCCAATTACATGAATAGACGAGCCTCGAGAAGATGTTCACTTTCATTCAGACACCAGATAATCATATGGTGGGCTGGGCTAATAAGAGGAGCTGTCTCCATTGCTTTGGCTTTCAAACAGGCATGTTTCACATACTCTGGGGTCACATTGGATCCAATCAATGCAATGATGATTACAAACACAATAATAGTTGTTCTCTTCAGTACAGTGGTCTTTGGCTTTCTGACGAAGCCACTTATAAGTTATCTGCTTCCCCATGCTGGAACTAGGCCCATCAGTCGCAACATATCAAAGGACGTTGGGGAGGACTTAAACCTGCCTCTGCTCTCCTTCGATGAATCTGCTGCTACCAATATAAGTCGTGCAAAGGATAATTTGTCTATGTTGATGGAGAGGCCTGTATACGCGATACATTCTTACTGGAGGAGGTTCGATGACGCCTATATGAGACCCCTATTTGGGGGGCCAGTTAGTAACCAGTCTACTTGTTAA

Protein Analysis

525

Amino Acids

58.35

Weight (kDa)

8.05

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 26 - 441 1.4e-54 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1322
Acc36I ACCTGC 2 cut(s) 472, 1407
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 2 cut(s) 55, 377
AccI GTMKAC 2 cut(s) 1485, 1565
AccII CGCG 1 cut(s) 1490
AciI CCGC 3 cut(s) 77, 147, 257
AclI AACGTT 1 cut(s) 359
AclWI GGATC 3 cut(s) 182, 1229, 1242
AcsI RAATTY 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 1267
AcyI GRCGYC 1 cut(s) 1521
AfaI GTAC 4 cut(s) 57, 475, 515, 1288
AfiI CCNNNNNNNGG 6 cut(s) 49, 401, 1343, 1541, 1542, 1543
AgsI TTSAA 8 cut(s) 116, 308, 357, 571, 732, 879, 1008, 1198
AjiI CACGTC 1 cut(s) 1052
AjnI CCWGG 2 cut(s) 380, 890
AluBI AGCT 6 cut(s) 35, 374, 519, 601, 793, 1175
AluI AGCT 6 cut(s) 35, 374, 519, 601, 793, 1175
Alw26I GTCTC 3 cut(s) 420, 1183, 1525
AlwI GGATC 3 cut(s) 182, 1229, 1242
AlwNI CAGNNNCTG 1 cut(s) 487
Ama87I CYCGRG 1 cut(s) 1108
AoxI GGCC 5 cut(s) 412, 765, 1352, 1478, 1547
ApeKI GCWGC 2 cut(s) 1055, 1427
ApoI RAATTY 1 cut(s) 310
Asp700I GAANNNNTTC 3 cut(s) 299, 727, 1117
Asp718I GGTACC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 1353, 1547
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 349, 553
AvaI CYCGRG 1 cut(s) 1108
BamHI GGATCC 1 cut(s) 1234
BanI GGYRCC 2 cut(s) 55, 377
BauI CACGAG 2 cut(s) 188, 423
BbvI GCAGC 2 cut(s) 1042, 1414
BccI CCATC 3 cut(s) 120, 1364, 1465
BcgI CGANNNNNNTGC 2 cut(s) 1406, 1440
BciT130I CCWGG 2 cut(s) 382, 892
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 420, 1183, 1525
BfaI CTAG 1 cut(s) 1350
BfmI CTRYAG 3 cut(s) 438, 479, 1018
BfuAI ACCTGC 2 cut(s) 472, 1407
BisI GCNGC 3 cut(s) 257, 1056, 1428
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 3 cut(s) 258, 1057, 1429
Bme1390I CCNGG 3 cut(s) 277, 382, 892
BmeT110I CYCGRG 1 cut(s) 1108
BmgBI CACGTC 1 cut(s) 1052
BmgT120I GGNCC 2 cut(s) 1353, 1547
BmiI GGNNCC 5 cut(s) 57, 379, 386, 1236, 1548
BmrFI CCNGG 3 cut(s) 277, 382, 892
BmrI ACTGGG 1 cut(s) 180
BmsI GCATC 4 cut(s) 499, 538, 946, 1023
BmuI ACTGGG 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 417, 449
BpmI CTGGAG 1 cut(s) 1525
Bpu10I CCTNAGC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 789
BpuMI CCSGG 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 1521
BsaI GGTCTC 1 cut(s) 1525
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 401, 1343, 1541, 1542, 1543
Bse1I ACTGG 4 cut(s) 175, 1508, 1550, 1561
Bse3DI GCAATG 3 cut(s) 912, 1182, 1254
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 2 cut(s) 382, 892
BseCI ATCGAT 1 cut(s) 124
BseGI GGATG 1 cut(s) 961
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 6 cut(s) 49, 401, 1343, 1541, 1542, 1543
BseMI GCAATG 3 cut(s) 912, 1182, 1254
BseMII CTCAG 3 cut(s) 62, 780, 794
BseNI ACTGG 4 cut(s) 175, 1508, 1550, 1561
BseRI GAGGAG 2 cut(s) 1185, 1522
BseXI GCAGC 2 cut(s) 1042, 1414
BseYI CCCAGC 1 cut(s) 1157
Bsh1236I CGCG 1 cut(s) 1490
BshFI GGCC 5 cut(s) 414, 767, 1354, 1480, 1549
BshNI GGYRCC 2 cut(s) 55, 377
BshVI ATCGAT 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 1108
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 6 cut(s) 49, 401, 1343, 1541, 1542, 1543
BsmAI GTCTC 3 cut(s) 420, 1183, 1525
BsmI GAATGC 5 cut(s) 424, 677, 727, 735, 1079
BsnI GGCC 5 cut(s) 414, 767, 1354, 1480, 1549
Bso31I GGTCTC 1 cut(s) 1525
BsoBI CYCGRG 1 cut(s) 1108
Bsp1407I TGTACA 2 cut(s) 473, 513
Bsp143I GATC 2 cut(s) 174, 1234
Bsp1720I GCTNAGC 1 cut(s) 789
BspACI CCGC 3 cut(s) 77, 147, 257
BspANI GGCC 5 cut(s) 414, 767, 1354, 1480, 1549
BspCNI CTCAG 3 cut(s) 61, 781, 795
BspDI ATCGAT 1 cut(s) 124
BspFNI CGCG 1 cut(s) 1490
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 5 cut(s) 57, 379, 386, 1236, 1548
BspMAI CTGCAG 1 cut(s) 483
BspMI ACCTGC 2 cut(s) 472, 1407
BspPI GGATC 3 cut(s) 182, 1229, 1242
BspT107I GGYRCC 2 cut(s) 55, 377
BspTNI GGTCTC 1 cut(s) 1525
BsrDI GCAATG 3 cut(s) 912, 1182, 1254
BsrGI TGTACA 2 cut(s) 473, 513
BsrI ACTGG 4 cut(s) 175, 1508, 1550, 1561
BssMI GATC 2 cut(s) 174, 1234
BssNAI GTATAC 1 cut(s) 1486
BssNI GRCGYC 1 cut(s) 1521
BssSI CACGAG 2 cut(s) 188, 423
Bst1107I GTATAC 1 cut(s) 1486
Bst2BI CACGAG 2 cut(s) 188, 423
Bst2UI CCWGG 2 cut(s) 382, 892
Bst4CI ACNGT 5 cut(s) 300, 469, 513, 820, 1291
Bst6I CTCTTC 2 cut(s) 225, 1286
BstACI GRCGYC 1 cut(s) 1521
BstAPI GCANNNNNTGC 1 cut(s) 487
BstAUI TGTACA 2 cut(s) 473, 513
BstDEI CTNAG 7 cut(s) 31, 48, 94, 396, 520, 789, 803
BstF5I GGATG 1 cut(s) 961
BstFNI CGCG 1 cut(s) 1490
BstKTI GATC 2 cut(s) 177, 1237
BstMAI GTCTC 3 cut(s) 420, 1183, 1525
BstMBI GATC 2 cut(s) 174, 1234
BstMWI GCNNNNNNNGC 2 cut(s) 411, 487
BstNI CCWGG 2 cut(s) 382, 892
BstNSI RCATGY 3 cut(s) 626, 899, 1209
BstSCI CCNGG 3 cut(s) 275, 380, 890
BstSFI CTRYAG 3 cut(s) 438, 479, 1018
BstUI CGCG 1 cut(s) 1490
BstV1I GCAGC 2 cut(s) 1042, 1414
BstX2I RGATCY 1 cut(s) 1234
BstXI CCANNNNNNTGG 1 cut(s) 1189
BstYI RGATCY 1 cut(s) 1234
BstZ17I GTATAC 1 cut(s) 1486
Bsu15I ATCGAT 1 cut(s) 124
BsuRI GGCC 5 cut(s) 414, 767, 1354, 1480, 1549
BsuTUI ATCGAT 1 cut(s) 124
BtrI CACGTC 1 cut(s) 1052
BtsCI GGATG 1 cut(s) 961
BtsI GCAGTG 2 cut(s) 476, 660
BtsIMutI CAGTG 5 cut(s) 476, 660, 816, 867, 1296
BveI ACCTGC 2 cut(s) 472, 1407
CaiI CAGNNNCTG 1 cut(s) 487
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 1353, 1547
ClaI ATCGAT 1 cut(s) 124
CseI GACGC 1 cut(s) 1529
Csp6I GTAC 4 cut(s) 56, 474, 514, 1287
CviQI GTAC 4 cut(s) 56, 474, 514, 1287
DdeI CTNAG 7 cut(s) 31, 48, 94, 396, 520, 789, 803
DpnI GATC 2 cut(s) 176, 1236
DpnII GATC 2 cut(s) 174, 1234
Eam1104I CTCTTC 2 cut(s) 225, 1286
EarI CTCTTC 2 cut(s) 225, 1286
Eco147I AGGCCT 1 cut(s) 1480
Eco31I GGTCTC 1 cut(s) 1525
Eco32I GATATC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 1267
Eco88I CYCGRG 1 cut(s) 1108
EcoRII CCWGG 2 cut(s) 380, 890
EcoRV GATATC 1 cut(s) 19
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FauNDI CATATG 1 cut(s) 1148
FblI GTMKAC 2 cut(s) 1485, 1565
Fnu4HI GCNGC 3 cut(s) 257, 1056, 1428
FokI GGATG 1 cut(s) 968
Fsp4HI GCNGC 3 cut(s) 257, 1056, 1428
FspBI CTAG 1 cut(s) 1350
GluI GCNGC 3 cut(s) 257, 1056, 1428
GsaI CCCAGC 1 cut(s) 1161
GsuI CTGGAG 1 cut(s) 1525
HaeIII GGCC 5 cut(s) 414, 767, 1354, 1480, 1549
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 1529
Hin1I GRCGYC 1 cut(s) 1521
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 5 cut(s) 137, 810, 882, 1004, 1421
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 349, 553
Hpy166II GTNNAC 4 cut(s) 476, 1121, 1486, 1566
Hpy188I TCNGA 8 cut(s) 104, 161, 219, 582, 683, 950, 1133, 1308
Hpy188III TCNNGA 8 cut(s) 38, 190, 289, 494, 740, 879, 962, 1110
Hpy8I GTNNAC 4 cut(s) 476, 1121, 1486, 1566
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 527, 717, 1423
HpyCH4III ACNGT 5 cut(s) 300, 469, 513, 820, 1291
HpyCH4IV ACGT 3 cut(s) 359, 1051, 1380
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 487
HpyF3I CTNAG 7 cut(s) 31, 48, 94, 396, 520, 789, 803
HpySE526I ACGT 3 cut(s) 359, 1051, 1380
Hsp92I GRCGYC 1 cut(s) 1521
KpnI GGTACC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 174, 1234
LmnI GCTCC 1 cut(s) 1172
Lsp1109I GCAGC 2 cut(s) 1042, 1414
LweI GCATC 4 cut(s) 499, 538, 946, 1023
MaeI CTAG 1 cut(s) 1350
MaeII ACGT 3 cut(s) 359, 1051, 1380
MaeIII GTNAC 5 cut(s) 688, 843, 865, 1225, 1556
MalI GATC 2 cut(s) 176, 1236
MboI GATC 2 cut(s) 174, 1234
MboII GAAGA 7 cut(s) 128, 242, 304, 595, 817, 1125, 1273
MflI RGATCY 1 cut(s) 1234
MluCI AATT 4 cut(s) 310, 981, 1087, 1456
MmeI TCCRAC 2 cut(s) 82, 928
MroXI GAANNNNTTC 3 cut(s) 299, 727, 1117
MslI CAYNNNNRTG 2 cut(s) 42, 495
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 3 cut(s) 277, 382, 892
Mva1269I GAATGC 5 cut(s) 424, 677, 727, 735, 1079
MvaI CCWGG 2 cut(s) 382, 892
MvnI CGCG 1 cut(s) 1490
MwoI GCNNNNNNNGC 2 cut(s) 411, 487
NciI CCSGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 1148
NdeII GATC 2 cut(s) 174, 1234
NlaIV GGNNCC 5 cut(s) 57, 379, 386, 1236, 1548
NmuCI GTSAC 4 cut(s) 688, 843, 865, 1225
NspI RCATGY 3 cut(s) 626, 899, 1209
PaeR7I CTCGAG 1 cut(s) 1108
PagI TCATGA 1 cut(s) 37
PceI AGGCCT 1 cut(s) 1480
PctI GAATGC 5 cut(s) 424, 677, 727, 735, 1079
PdmI GAANNNNTTC 3 cut(s) 299, 727, 1117
PfeI GAWTC 5 cut(s) 137, 810, 882, 1004, 1421
PkrI GCNGC 3 cut(s) 258, 1057, 1429
PsiI TTATAA 1 cut(s) 1322
Psp1406I AACGTT 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 380, 890
PspFI CCCAGC 1 cut(s) 1157
PspGI CCWGG 2 cut(s) 380, 890
PspN4I GGNNCC 5 cut(s) 57, 379, 386, 1236, 1548
PspPI GGNCC 2 cut(s) 1353, 1547
PstI CTGCAG 1 cut(s) 483
PstNI CAGNNNCTG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 1234
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 4 cut(s) 57, 475, 515, 1288
RsaNI GTAC 4 cut(s) 56, 474, 514, 1287
RseI CAYNNNNRTG 2 cut(s) 42, 495
SatI GCNGC 3 cut(s) 257, 1056, 1428
Sau3AI GATC 2 cut(s) 174, 1234
Sau96I GGNCC 2 cut(s) 1353, 1547
ScrFI CCNGG 3 cut(s) 277, 382, 892
SfaNI GCATC 4 cut(s) 499, 538, 946, 1023
SfcI CTRYAG 3 cut(s) 438, 479, 1018
Sfr274I CTCGAG 1 cut(s) 1108
SlaI CTCGAG 1 cut(s) 1108
SmiMI CAYNNNNRTG 2 cut(s) 42, 495
SmlI CTYRAG 1 cut(s) 1108
SmoI CTYRAG 1 cut(s) 1108
Sse9I AATT 4 cut(s) 310, 981, 1087, 1456
SseBI AGGCCT 1 cut(s) 1480
SsiI CCGC 3 cut(s) 77, 147, 257
SspI AATATT 2 cut(s) 450, 1041
SspMI CTAG 1 cut(s) 1350
StuI AGGCCT 1 cut(s) 1480
StyD4I CCNGG 3 cut(s) 275, 380, 890
TaaI ACNGT 5 cut(s) 300, 469, 513, 820, 1291
TaiI ACGT 3 cut(s) 362, 1054, 1383
TaqI TCGA 4 cut(s) 124, 1109, 1416, 1515
TasI AATT 4 cut(s) 310, 981, 1087, 1456
TatI WGTACW 3 cut(s) 473, 513, 1286
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 5 cut(s) 137, 810, 882, 1004, 1421
TscAI CASTG 5 cut(s) 483, 667, 823, 874, 1296
TseFI GTSAC 4 cut(s) 688, 843, 865, 1225
TseI GCWGC 2 cut(s) 1055, 1427
Tsp45I GTSAC 4 cut(s) 688, 843, 865, 1225
TspDTI ATGAA 9 cut(s) 145, 150, 243, 340, 513, 922, 1109, 1116, 1434
TspRI CASTG 5 cut(s) 483, 667, 823, 874, 1296
XapI RAATTY 1 cut(s) 310
XceI RCATGY 3 cut(s) 626, 899, 1209
XhoI CTCGAG 1 cut(s) 1108
XmiI GTMKAC 2 cut(s) 1485, 1565
XmnI GAANNNNTTC 3 cut(s) 299, 727, 1117
XspI CTAG 1 cut(s) 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.