Rroxscaffold_1G00024110

Sodium hydrogen exchanger

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
29934229 .. 29937878
3650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024110.1

Sequence Viewer

Length: 1569 bp
ATGGCAGAACTATATGATTTCGCAAAGAACTTAGCTCATGACCATGCTCAGGTGGTACCAATCTCACTTTTTGTGGCGGTTCTCTGTATTTGCTTAGTCGTCGGACACTTGCTTGAAGAAAATCGATGGGTTAATGAATCCATTACCGCCATTTTCATCGGACTGCTAACTGGGATCATAATCTTGCTCCTGAGCAAGGGGAAAAGTTCTCACATTCTGACATTTAATGAAGAGTTGTTCTTTATATATCTCCTGCCGCCTATTATATTTAATGCCGGGTTTCAGGTCAAGAAGAAGCAGTTCTTTCAAAATTTCTTAACTATCATGTTGTTTGGGGTGATTGGCGTTTTCATTTCAATGTTAGTCATAACAGCTGGTGCCTGGTTCCTATTTCCTAAGTTGGGCTTCGTTGGCCTGAATGCACGAGACTATCTCGCTGTAGGAACAATATTTTCATCAACTGATACAGTCTGTACACTGCAGGTTCTTCACCAAGATGAAACTCCTTTACTGTACAGCTTAGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTCCTTTTCAATGCAGTTCAGAAGATTGATGTTAATAAGCTTAATAGCGGGATTGGATTGCATGTCATTGGAGATTTCCTATACCTGTTCTCAACAAGCACTGCTCTTGGAGTTGCATTCGGACTTGTGACAGCATATTCCCTTAAAACCTTATGCTTTGGAAGGCATTCAAGCATTCGGGAGGTTTCTTTAGTGGTTCTAATGGCCTATCTGTCTTACATGGTGGCTGAGCTGTTAGACCTGAGTGGAATCCTCACTGTTTTCTTCTGTGGGATTGTCATGTCACACTATGCTTGGCATAATGTCACTGAAAGTTCAAGAATCACAACCAGGCATGTATTTGCAATGATGTCATTTATTGCAGAAACATTCATATTTCTTTATGTCGGAATGGATGCTCTTGACATTGAGAAGTGGAAATTAACTAAGTTGAGTTTTGGGGCTTCAATGGGCATCTATAGTATGACACTCTTACTAATATTGCTTGGACGTGCTGCCTTTGTATTCCCTCTCTCTGCATTCTCCAATTACATGAATAGACGAGCCTCGAGAAGATGTTCACTTTCATTCAGACACCAGATAATCATATGGTGGGCTGGGCTAATAAGAGGAGCTGTCTCCATTGCTTTGGCTTTCAAACAGTTCACATACTCTGGGGTCACATTGGATCCAATCAATGCAATGATGATTACAAATACAATAATAGTTGTTCTCTTCAGTACAGTGGTCTTTGGCTTTCTGACGAAGCCACTTATAAGTTATCTGCTTCCCCATGTTGGAACTAAGCCCATCAGTCGCAACGTATCAAAGGACGTTGGGGAGGACTTAAACCTGCCTCTGCTCTCCTTCGATGAATCTACTGCTACCAATATAAGTCGTGCAAAGGATAATTTGTCTATGTTGATGGAGAGGCCTGTGTACGCGATACATTCTTACTGGAGGAGGTTCGATGACGCCTATATGAGACCCCTATTTGGGGGGCCAGTTAGTAACCAGTCTACTTGTTAA

Protein Analysis

522

Amino Acids

58.2

Weight (kDa)

8.36

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 26 - 439 1.4e-54 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1316
Acc36I ACCTGC 2 cut(s) 472, 1401
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 2 cut(s) 55, 377
AccI GTMKAC 1 cut(s) 1559
AccII CGCG 1 cut(s) 1484
AciI CCGC 4 cut(s) 77, 147, 257, 609
AclWI GGATC 3 cut(s) 182, 1223, 1236
AcsI RAATTY 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 1261
AcyI GRCGYC 1 cut(s) 1515
AfaI GTAC 5 cut(s) 57, 475, 515, 1282, 1481
AfiI CCNNNNNNNGG 7 cut(s) 49, 196, 401, 1337, 1535, 1536, 1537
AgsI TTSAA 8 cut(s) 116, 308, 357, 571, 732, 879, 1008, 1198
AjiI CACGTC 1 cut(s) 1052
AjnI CCWGG 2 cut(s) 380, 890
AluBI AGCT 6 cut(s) 35, 374, 519, 601, 793, 1175
AluI AGCT 6 cut(s) 35, 374, 519, 601, 793, 1175
Alw26I GTCTC 3 cut(s) 420, 1183, 1519
AlwI GGATC 3 cut(s) 182, 1223, 1236
Ama87I CYCGRG 1 cut(s) 1108
AoxI GGCC 4 cut(s) 412, 765, 1472, 1541
ApeKI GCWGC 1 cut(s) 1055
ApoI RAATTY 1 cut(s) 310
Asp700I GAANNNNTTC 3 cut(s) 299, 727, 1117
Asp718I GGTACC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 1541
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 3 cut(s) 349, 482, 553
AvaI CYCGRG 1 cut(s) 1108
BamHI GGATCC 1 cut(s) 1228
BanI GGYRCC 2 cut(s) 55, 377
BauI CACGAG 1 cut(s) 423
BbvI GCAGC 1 cut(s) 1042
BccI CCATC 3 cut(s) 120, 1358, 1459
BciT130I CCWGG 2 cut(s) 382, 892
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 420, 1183, 1519
BfmI CTRYAG 3 cut(s) 438, 479, 1018
BfuAI ACCTGC 2 cut(s) 472, 1401
BisI GCNGC 2 cut(s) 257, 1056
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 2 cut(s) 258, 1057
Bme1390I CCNGG 3 cut(s) 277, 382, 892
BmeT110I CYCGRG 1 cut(s) 1108
BmgBI CACGTC 1 cut(s) 1052
BmgT120I GGNCC 1 cut(s) 1541
BmiI GGNNCC 5 cut(s) 57, 379, 386, 1230, 1542
BmrFI CCNGG 3 cut(s) 277, 382, 892
BmrI ACTGGG 1 cut(s) 180
BmsI GCATC 3 cut(s) 538, 946, 1023
BmuI ACTGGG 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 417, 449
BpmI CTGGAG 1 cut(s) 1519
Bpu10I CCTNAGC 2 cut(s) 48, 191
Bpu1102I GCTNAGC 1 cut(s) 789
BpuMI CCSGG 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 1515
BsaI GGTCTC 1 cut(s) 1519
Bsc4I CCNNNNNNNGG 7 cut(s) 49, 196, 401, 1337, 1535, 1536, 1537
Bse1I ACTGG 4 cut(s) 175, 1502, 1544, 1555
Bse3DI GCAATG 3 cut(s) 912, 1182, 1248
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 2 cut(s) 382, 892
BseCI ATCGAT 1 cut(s) 124
BseGI GGATG 1 cut(s) 961
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 7 cut(s) 49, 196, 401, 1337, 1535, 1536, 1537
BseMI GCAATG 3 cut(s) 912, 1182, 1248
BseMII CTCAG 4 cut(s) 62, 182, 780, 794
BseNI ACTGG 4 cut(s) 175, 1502, 1544, 1555
BseRI GAGGAG 2 cut(s) 1185, 1516
BseXI GCAGC 1 cut(s) 1042
BseYI CCCAGC 1 cut(s) 1157
Bsh1236I CGCG 1 cut(s) 1484
BshFI GGCC 4 cut(s) 414, 767, 1474, 1543
BshNI GGYRCC 2 cut(s) 55, 377
BshVI ATCGAT 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 1108
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 7 cut(s) 49, 196, 401, 1337, 1535, 1536, 1537
BsmAI GTCTC 3 cut(s) 420, 1183, 1519
BsmI GAATGC 5 cut(s) 424, 677, 727, 735, 1079
BsnI GGCC 4 cut(s) 414, 767, 1474, 1543
Bso31I GGTCTC 1 cut(s) 1519
BsoBI CYCGRG 1 cut(s) 1108
Bsp1407I TGTACA 2 cut(s) 473, 513
Bsp143I GATC 2 cut(s) 174, 1228
Bsp1720I GCTNAGC 1 cut(s) 789
BspACI CCGC 4 cut(s) 77, 147, 257, 609
BspANI GGCC 4 cut(s) 414, 767, 1474, 1543
BspCNI CTCAG 4 cut(s) 61, 183, 781, 795
BspDI ATCGAT 1 cut(s) 124
BspFNI CGCG 1 cut(s) 1484
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 5 cut(s) 57, 379, 386, 1230, 1542
BspMAI CTGCAG 1 cut(s) 483
BspMI ACCTGC 2 cut(s) 472, 1401
BspPI GGATC 3 cut(s) 182, 1223, 1236
BspT107I GGYRCC 2 cut(s) 55, 377
BspTNI GGTCTC 1 cut(s) 1519
BsrDI GCAATG 3 cut(s) 912, 1182, 1248
BsrGI TGTACA 2 cut(s) 473, 513
BsrI ACTGG 4 cut(s) 175, 1502, 1544, 1555
BssMI GATC 2 cut(s) 174, 1228
BssNI GRCGYC 1 cut(s) 1515
BssSI CACGAG 1 cut(s) 423
Bst2BI CACGAG 1 cut(s) 423
Bst2UI CCWGG 2 cut(s) 382, 892
Bst4CI ACNGT 5 cut(s) 469, 513, 820, 1203, 1285
Bst6I CTCTTC 2 cut(s) 225, 1280
BstACI GRCGYC 1 cut(s) 1515
BstAUI TGTACA 2 cut(s) 473, 513
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 961
BstFNI CGCG 1 cut(s) 1484
BstKTI GATC 2 cut(s) 177, 1231
BstMAI GTCTC 3 cut(s) 420, 1183, 1519
BstMBI GATC 2 cut(s) 174, 1228
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 2 cut(s) 382, 892
BstNSI RCATGY 2 cut(s) 626, 899
BstSCI CCNGG 3 cut(s) 275, 380, 890
BstSFI CTRYAG 3 cut(s) 438, 479, 1018
BstUI CGCG 1 cut(s) 1484
BstV1I GCAGC 1 cut(s) 1042
BstX2I RGATCY 1 cut(s) 1228
BstXI CCANNNNNNTGG 1 cut(s) 1189
BstYI RGATCY 1 cut(s) 1228
Bsu15I ATCGAT 1 cut(s) 124
BsuRI GGCC 4 cut(s) 414, 767, 1474, 1543
BsuTUI ATCGAT 1 cut(s) 124
BtrI CACGTC 1 cut(s) 1052
BtsCI GGATG 1 cut(s) 961
BtsI GCAGTG 2 cut(s) 476, 660
BtsIMutI CAGTG 5 cut(s) 476, 660, 816, 867, 1290
BveI ACCTGC 2 cut(s) 472, 1401
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 1541
ClaI ATCGAT 1 cut(s) 124
CseI GACGC 1 cut(s) 1523
Csp6I GTAC 5 cut(s) 56, 474, 514, 1281, 1480
CviAII CATG 9 cut(s) 38, 44, 325, 623, 781, 841, 896, 1093, 1334
CviQI GTAC 5 cut(s) 56, 474, 514, 1281, 1480
DpnI GATC 2 cut(s) 176, 1230
DpnII GATC 2 cut(s) 174, 1228
Eam1104I CTCTTC 2 cut(s) 225, 1280
EarI CTCTTC 2 cut(s) 225, 1280
Eco147I AGGCCT 1 cut(s) 1474
Eco31I GGTCTC 1 cut(s) 1519
Eco57I CTGAAG 1 cut(s) 1261
Eco88I CYCGRG 1 cut(s) 1108
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 380, 890
FaeI CATG 9 cut(s) 41, 47, 328, 626, 784, 844, 899, 1096, 1337
FalI AAGNNNNNCTT 4 cut(s) 287, 319, 389, 421
FatI CATG 9 cut(s) 37, 43, 324, 622, 780, 840, 895, 1092, 1333
FauI CCCGC 1 cut(s) 602
FauNDI CATATG 1 cut(s) 1148
FblI GTMKAC 1 cut(s) 1559
Fnu4HI GCNGC 2 cut(s) 257, 1056
FokI GGATG 1 cut(s) 968
Fsp4HI GCNGC 2 cut(s) 257, 1056
GluI GCNGC 2 cut(s) 257, 1056
GsaI CCCAGC 1 cut(s) 1161
GsuI CTGGAG 1 cut(s) 1519
HaeIII GGCC 4 cut(s) 414, 767, 1474, 1543
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 1523
Hin1I GRCGYC 1 cut(s) 1515
Hin1II CATG 9 cut(s) 41, 47, 328, 626, 784, 844, 899, 1096, 1337
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 4 cut(s) 137, 810, 882, 1415
HpaII CCGG 1 cut(s) 276
HphI GGTGA 3 cut(s) 349, 482, 553
Hpy166II GTNNAC 5 cut(s) 476, 1121, 1206, 1480, 1560
Hpy188I TCNGA 8 cut(s) 104, 161, 219, 582, 683, 950, 1133, 1302
Hpy188III TCNNGA 7 cut(s) 38, 190, 289, 740, 879, 962, 1110
Hpy8I GTNNAC 5 cut(s) 476, 1121, 1206, 1480, 1560
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 527, 717, 1417
HpyCH4III ACNGT 5 cut(s) 469, 513, 820, 1203, 1285
HpyCH4IV ACGT 3 cut(s) 1051, 1362, 1374
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpySE526I ACGT 3 cut(s) 1051, 1362, 1374
Hsp92I GRCGYC 1 cut(s) 1515
Hsp92II CATG 9 cut(s) 41, 47, 328, 626, 784, 844, 899, 1096, 1337
KpnI GGTACC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 174, 1228
LmnI GCTCC 2 cut(s) 192, 1172
Lsp1109I GCAGC 1 cut(s) 1042
LweI GCATC 3 cut(s) 538, 946, 1023
MaeII ACGT 3 cut(s) 1051, 1362, 1374
MaeIII GTNAC 5 cut(s) 688, 843, 865, 1219, 1550
MalI GATC 2 cut(s) 176, 1230
MboI GATC 2 cut(s) 174, 1228
MboII GAAGA 8 cut(s) 128, 242, 304, 479, 595, 817, 1125, 1267
MflI RGATCY 1 cut(s) 1228
MluCI AATT 4 cut(s) 310, 980, 1087, 1450
MmeI TCCRAC 3 cut(s) 82, 928, 1318
MroXI GAANNNNTTC 3 cut(s) 299, 727, 1117
MslI CAYNNNNRTG 3 cut(s) 42, 356, 495
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 3 cut(s) 277, 382, 892
Mva1269I GAATGC 5 cut(s) 424, 677, 727, 735, 1079
MvaI CCWGG 2 cut(s) 382, 892
MvnI CGCG 1 cut(s) 1484
MwoI GCNNNNNNNGC 1 cut(s) 411
NciI CCSGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 1148
NdeII GATC 2 cut(s) 174, 1228
NlaIII CATG 9 cut(s) 41, 47, 328, 626, 784, 844, 899, 1096, 1337
NlaIV GGNNCC 5 cut(s) 57, 379, 386, 1230, 1542
NmuCI GTSAC 4 cut(s) 688, 843, 865, 1219
NspI RCATGY 2 cut(s) 626, 899
PaeR7I CTCGAG 1 cut(s) 1108
PagI TCATGA 1 cut(s) 37
PceI AGGCCT 1 cut(s) 1474
PctI GAATGC 5 cut(s) 424, 677, 727, 735, 1079
PdmI GAANNNNTTC 3 cut(s) 299, 727, 1117
PfeI GAWTC 4 cut(s) 137, 810, 882, 1415
PkrI GCNGC 2 cut(s) 258, 1057
PsiI TTATAA 1 cut(s) 1316
Psp6I CCWGG 2 cut(s) 380, 890
PspFI CCCAGC 1 cut(s) 1157
PspGI CCWGG 2 cut(s) 380, 890
PspN4I GGNNCC 5 cut(s) 57, 379, 386, 1230, 1542
PspPI GGNCC 1 cut(s) 1541
PstI CTGCAG 1 cut(s) 483
PsuI RGATCY 1 cut(s) 1228
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 5 cut(s) 57, 475, 515, 1282, 1481
RsaNI GTAC 5 cut(s) 56, 474, 514, 1281, 1480
RseI CAYNNNNRTG 3 cut(s) 42, 356, 495
SatI GCNGC 2 cut(s) 257, 1056
Sau3AI GATC 2 cut(s) 174, 1228
Sau96I GGNCC 1 cut(s) 1541
ScrFI CCNGG 3 cut(s) 277, 382, 892
SfaNI GCATC 3 cut(s) 538, 946, 1023
SfcI CTRYAG 3 cut(s) 438, 479, 1018
Sfr274I CTCGAG 1 cut(s) 1108
SlaI CTCGAG 1 cut(s) 1108
SmiMI CAYNNNNRTG 3 cut(s) 42, 356, 495
SmlI CTYRAG 1 cut(s) 1108
SmoI CTYRAG 1 cut(s) 1108
Sse9I AATT 4 cut(s) 310, 980, 1087, 1450
SseBI AGGCCT 1 cut(s) 1474
SsiI CCGC 4 cut(s) 77, 147, 257, 609
SspI AATATT 2 cut(s) 450, 1041
StuI AGGCCT 1 cut(s) 1474
StyD4I CCNGG 3 cut(s) 275, 380, 890
TaaI ACNGT 5 cut(s) 469, 513, 820, 1203, 1285
TaiI ACGT 3 cut(s) 1054, 1365, 1377
TaqI TCGA 4 cut(s) 124, 1109, 1410, 1509
TasI AATT 4 cut(s) 310, 980, 1087, 1450
TatI WGTACW 3 cut(s) 473, 513, 1280
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 4 cut(s) 137, 810, 882, 1415
TscAI CASTG 5 cut(s) 483, 667, 823, 874, 1290
TseFI GTSAC 4 cut(s) 688, 843, 865, 1219
TseI GCWGC 1 cut(s) 1055
Tsp45I GTSAC 4 cut(s) 688, 843, 865, 1219
TspRI CASTG 5 cut(s) 483, 667, 823, 874, 1290
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 1 cut(s) 310
XceI RCATGY 2 cut(s) 626, 899
XhoI CTCGAG 1 cut(s) 1108
XmiI GTMKAC 1 cut(s) 1559
XmnI GAANNNNTTC 3 cut(s) 299, 727, 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.