Rmu_sc0038647.1_g000001

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038647.1
OG0003886
Physical Location & Seq
Reverse (-)
2 .. 1138
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038647.1_g000001.1.cds

Sequence Viewer

Length: 476 bp
atggccattcttctcctctccctccctcccaacccactaaaccctaaacccaaaatccccaaccccacagccccaaagcttacttcaaagctcaccatcaccaacaacacacccacctccaaaagagacttaatcctcaagaccacttccatctttctcatttctttgatccctcaacaatacccaactgcccattcttcaacagaagaagcttcacctcctccaaaatcgattctttccggcattgccaacaccaaaagctggttccagttctatggtgatgggttttccattagggtccctcctcagtttgaggacattatggagcctgaggattacaatgctggattgtccctttatggagataaggcaaagcccaagatcttttcggcacgttttgcatcttctgatggatctgaggtagtgaatgttgttattaaaccttccaatcagttcaagatcacctttttagaggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

159

Amino Acids

17.46

Weight (kDa)

9.13

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 261
AclWI GGATC 2 cut(s) 163, 421
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 3 cut(s) 87, 201, 457
AjuI GAANNNNNNNTTGG 6 cut(s) 67, 99, 178, 210, 248, 280
AluBI AGCT 4 cut(s) 79, 91, 212, 261
AluI AGCT 4 cut(s) 79, 91, 212, 261
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 163, 421
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 5 cut(s) 85, 91, 207, 290, 454
AvaII GGWCC 1 cut(s) 298
AxyI CCTNAGG 1 cut(s) 330
BalI TGGCCA 1 cut(s) 5
BccI CCATC 4 cut(s) 104, 158, 275, 404
BcoDI GTCTC 1 cut(s) 120
BglII AGATCT 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 4 cut(s) 266, 299, 300, 327
BmsI GCATC 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 268
Bse21I CCTNAGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 243
BseCI ATCGAT 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 3 cut(s) 320, 321, 408
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 3 cut(s) 5, 210, 294
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 230
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 2 cut(s) 284, 337
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 284, 337
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 4 cut(s) 168, 381, 413, 459
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 319, 322, 409
BspDI ATCGAT 1 cut(s) 230
BspLI GGNNCC 4 cut(s) 266, 299, 300, 327
BspPI GGATC 2 cut(s) 163, 421
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 268
BssMI GATC 4 cut(s) 168, 381, 413, 459
BstAPI GCANNNNNTGC 1 cut(s) 398
BstDEI CTNAG 3 cut(s) 306, 330, 417
BstKTI GATC 4 cut(s) 171, 384, 416, 462
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 4 cut(s) 168, 381, 413, 459
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstX2I RGATCY 2 cut(s) 381, 413
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 2 cut(s) 381, 413
Bsu15I ATCGAT 1 cut(s) 230
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 298
ClaI ATCGAT 1 cut(s) 230
CviJI RGCY 8 cut(s) 5, 71, 79, 91, 212, 261, 328, 376
CviKI_1 RGCY 8 cut(s) 5, 71, 79, 91, 212, 261, 328, 376
DdeI CTNAG 3 cut(s) 306, 330, 417
DpnI GATC 4 cut(s) 170, 383, 415, 461
DpnII GATC 4 cut(s) 168, 381, 413, 459
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 298
Eco81I CCTNAGG 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 298
FaiI YATR 3 cut(s) 276, 323, 360
FalI AAGNNNNNCTT 1 cut(s) 449
FaqI GGGAC 2 cut(s) 284, 337
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 240
HindIII AAGCTT 2 cut(s) 77, 210
HinfI GANTC 1 cut(s) 232
HpaII CCGG 1 cut(s) 240
HphI GGTGA 5 cut(s) 85, 91, 207, 290, 454
Hpy188I TCNGA 2 cut(s) 409, 418
Hpy188III TCNNGA 2 cut(s) 139, 457
HpyAV CCTTC 1 cut(s) 453
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 1 cut(s) 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 3 cut(s) 306, 330, 417
HpySE526I ACGT 1 cut(s) 394
KflI GGGWCCC 1 cut(s) 298
Kzo9I GATC 4 cut(s) 168, 381, 413, 459
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 5 cut(s) 247, 253, 281, 330, 342
LweI GCATC 1 cut(s) 410
MaeII ACGT 1 cut(s) 394
MalI GATC 4 cut(s) 170, 383, 415, 461
MboI GATC 4 cut(s) 168, 381, 413, 459
MboII GAAGA 3 cut(s) 189, 218, 396
MflI RGATCY 2 cut(s) 381, 413
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 131, 438
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 4 cut(s) 168, 381, 413, 459
NlaIV GGNNCC 4 cut(s) 266, 299, 300, 327
PfeI GAWTC 1 cut(s) 232
PflMI CCANNNNNTGG 1 cut(s) 261
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
PspN4I GGNNCC 4 cut(s) 266, 299, 300, 327
PspPI GGNCC 1 cut(s) 298
PspPPI RGGWCCY 1 cut(s) 298
PsuI RGATCY 2 cut(s) 381, 413
SaqAI TTAA 2 cut(s) 131, 438
Sau3AI GATC 4 cut(s) 168, 381, 413, 459
Sau96I GGNCC 1 cut(s) 298
SfaNI GCATC 1 cut(s) 410
SgeI CNNG 9 cut(s) 151, 252, 274, 280, 341, 357, 391, 405, 469
SinI GGWCC 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
TaiI ACGT 1 cut(s) 397
TaqI TCGA 1 cut(s) 230
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 2 cut(s) 131, 438
Tru9I TTAA 2 cut(s) 131, 438
Van91I CCANNNNNTGG 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.