Rorug02G0652800

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003886
Physical Location & Seq
Reverse (-)
76009119 .. 76010098
980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0652800.1

Sequence Viewer

Length: 357 bp
ATGAACCATGTCAAGAATTTGACGACCCATGTCCAGAATTTAATATCAAACACGTATTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCTCTGGAGACCCAAGATAATAGCCTTCGTGGTCGGAGCCGCACTCCAGCTCCGACGCCGTCGCTGGAATACCTATCAGATCATTGTTTTGACTCTTAACTATAATATGCAGAAACTTGTTGGCATGGGAGGTGAAGGTGGAATGGGTGGGACGGATTTCTCGAAACTTGCTGGCATGGGAGGTGATGGTGCAATGGGTGACTTTGATGATAGCGATGATGAGTTCATGCATTCTTGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

118

Amino Acids

13.36

Weight (kDa)

9.3

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 102
AciI CCGC 1 cut(s) 153
AcsI RAATTY 2 cut(s) 16, 37
AcyI GRCGYC 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 51
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 115
Aor13HI TCCGGA 1 cut(s) 102
ApoI RAATTY 2 cut(s) 16, 37
AsuHPI GGTGA 3 cut(s) 257, 308, 323
BccI CCATC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 115
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BoxI GACNNNNGTC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 2 cut(s) 139, 143
BsaAI YACGTR 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 312
BseAI TCCGGA 1 cut(s) 102
BseMI GCAATG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 91
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 343
Bso31I GGTCTC 1 cut(s) 115
Bsp13I TCCGGA 1 cut(s) 102
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 1 cut(s) 91
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 286
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 192
BstPAI GACNNNNGTC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 286
CseI GACGC 1 cut(s) 177
CviAII CATG 5 cut(s) 8, 29, 238, 289, 340
CviJI RGCY 3 cut(s) 137, 152, 163
CviKI_1 RGCY 3 cut(s) 137, 152, 163
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 345
FaeI CATG 5 cut(s) 11, 32, 241, 292, 343
FaiI YATR 7 cut(s) 9, 30, 216, 221, 239, 290, 341
FaqI GGGAC 1 cut(s) 277
FatI CATG 5 cut(s) 7, 28, 237, 288, 339
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 2 cut(s) 139, 143
HapII CCGG 1 cut(s) 103
HgaI GACGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 5 cut(s) 11, 32, 241, 292, 343
HinfI GANTC 2 cut(s) 106, 205
HpaII CCGG 1 cut(s) 103
HphI GGTGA 3 cut(s) 257, 308, 323
Hpy188I TCNGA 3 cut(s) 149, 167, 192
Hpy188III TCNNGA 5 cut(s) 13, 34, 103, 118, 274
Hpy99I CGWCG 2 cut(s) 171, 177
HpyAV CCTTC 2 cut(s) 148, 242
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 84, 223, 305, 343
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 5 cut(s) 11, 32, 241, 292, 343
Kpn2I TCCGGA 1 cut(s) 102
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 149, 168
LpnPI CCDG 8 cut(s) 47, 86, 103, 104, 116, 163, 173, 270
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 53, 88
MluCI AATT 3 cut(s) 16, 37, 79
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 2 cut(s) 127, 190
MnlI CCTC 3 cut(s) 125, 236, 287
Mph1103I ATGCAT 1 cut(s) 345
MroI TCCGGA 1 cut(s) 102
MseI TTAA 2 cut(s) 41, 210
MspI CCGG 1 cut(s) 103
Mva1269I GAATGC 1 cut(s) 343
NdeII GATC 1 cut(s) 192
NlaIII CATG 5 cut(s) 11, 32, 241, 292, 343
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 106
PflFI GACNNNGTC 1 cut(s) 171
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 54
PshAI GACNNNNGTC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 41, 210
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 192
SchI GAGTC 1 cut(s) 199
SetI ASST 6 cut(s) 56, 165, 188, 247, 253, 298
Sse9I AATT 3 cut(s) 16, 37, 79
SsiI CCGC 1 cut(s) 153
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 275
TasI AATT 3 cut(s) 16, 37, 79
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 41, 210
Tru9I TTAA 2 cut(s) 41, 210
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 17, 328
TspGWI ACGGA 1 cut(s) 281
Tth111I GACNNNGTC 1 cut(s) 171
XapI RAATTY 2 cut(s) 16, 37
Zsp2I ATGCAT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.