Rorug02G0652600

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003886
Physical Location & Seq
Forward (+)
76006042 .. 76006566
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0652600.1

Sequence Viewer

Length: 525 bp
ATGGCATATATCCCTGATGTTGAAGATGATATGAAACCAAAAGCTGGGCAGCAATTCAAGTCATTGGATGCAACATACAATTTCTACAATGATTATGCACTTAAGGCTGGATTCAGTGTCAGAAAAAGTAAGGAGACGAAGAAGAAGGGAATAGTATATTGGAAACAATATGTTTGTTCTAAAGAAGGGGAAACTGATGAGACATGGAGGAAAAAAAATGAAATTGAGGAAAGAGACCGAGGGAAGACTCGAACAGGGTGCAATGCAAAATTAACTGTATGTTATGATGGAAGTAATTATGTGGTCAAGACTTTCAATGAGGAACACAATCATCCTCCTACAACACCAAGCAGAGTTCACTTGTTAAGATCACAGCGTACTGTGTCTACCGCAAAAAAGAATCTAATACAAGACTTGAGGCGGGTGGACATTCCTATATACCAGCAATTTGAATTATTCGAGACACAAGCTGGTGGGCATGAAAATGTTGGCTGCACTGAAAGAGATTTAAGAAATGCGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

174

Amino Acids

20.18

Weight (kDa)

8.94

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 27 - 112 1.6e-19 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 44
AccI GTMKAC 1 cut(s) 386
AciI CCGC 3 cut(s) 390, 421, 518
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 44
AflII CTTAAG 1 cut(s) 101
AgsI TTSAA 4 cut(s) 23, 58, 316, 452
AjuI GAANNNNNNNTTGG 2 cut(s) 142, 174
AluBI AGCT 2 cut(s) 44, 470
AluI AGCT 2 cut(s) 44, 470
Alw26I GTCTC 4 cut(s) 128, 194, 228, 455
ApeKI GCWGC 2 cut(s) 49, 492
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 61, 479
BccI CCATC 1 cut(s) 281
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BcoDI GTCTC 4 cut(s) 128, 194, 228, 455
BfrI CTTAAG 1 cut(s) 101
BisI GCNGC 2 cut(s) 50, 493
BlsI GCNGC 2 cut(s) 51, 494
BmsI GCATC 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 436
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 2 cut(s) 73, 331
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 268
BseXI GCAGC 2 cut(s) 61, 479
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 4 cut(s) 128, 194, 228, 455
BsmBI CGTCTC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 368
BspACI CCGC 3 cut(s) 390, 421, 518
BspTI CTTAAG 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 277, 382
BstAFI CTTAAG 1 cut(s) 101
BstF5I GGATG 2 cut(s) 73, 331
BstKTI GATC 1 cut(s) 371
BstMAI GTCTC 4 cut(s) 128, 194, 228, 455
BstMBI GATC 1 cut(s) 368
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstV1I GCAGC 2 cut(s) 61, 479
BstV2I GAAGAC 1 cut(s) 251
BtsCI GGATG 2 cut(s) 73, 331
BtsIMutI CAGTG 2 cut(s) 121, 495
Csp6I GTAC 1 cut(s) 378
CviAII CATG 2 cut(s) 204, 479
CviJI RGCY 4 cut(s) 44, 107, 470, 492
CviKI_1 RGCY 4 cut(s) 44, 107, 470, 492
CviQI GTAC 1 cut(s) 378
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 2 cut(s) 207, 482
FatI CATG 2 cut(s) 203, 478
FauI CCCGC 1 cut(s) 414
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 2 cut(s) 50, 493
FokI GGATG 2 cut(s) 80, 318
Fsp4HI GCNGC 2 cut(s) 50, 493
GluI GCNGC 2 cut(s) 50, 493
GsaI CCCAGC 1 cut(s) 48
Hin1II CATG 2 cut(s) 207, 482
HinfI GANTC 3 cut(s) 111, 247, 400
Hpy166II GTNNAC 3 cut(s) 358, 387, 427
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 2 cut(s) 307, 460
Hpy8I GTNNAC 3 cut(s) 358, 387, 427
HpyAV CCTTC 2 cut(s) 139, 179
HpyCH4III ACNGT 2 cut(s) 277, 382
HpyCH4V TGCA 5 cut(s) 71, 98, 261, 266, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
Hsp92II CATG 2 cut(s) 207, 482
Kzo9I GATC 1 cut(s) 368
LpnPI CCDG 6 cut(s) 27, 30, 93, 240, 455, 456
Lsp1109I GCAGC 2 cut(s) 61, 479
LweI GCATC 1 cut(s) 58
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 4 cut(s) 35, 151, 154, 256
MluCI AATT 7 cut(s) 53, 79, 222, 269, 295, 446, 452
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 6 cut(s) 201, 220, 233, 313, 345, 411
MseI TTAA 4 cut(s) 102, 272, 365, 509
MslI CAYNNNNRTG 1 cut(s) 483
MspCI CTTAAG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 368
NlaIII CATG 2 cut(s) 207, 482
PfeI GAWTC 2 cut(s) 111, 400
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 2 cut(s) 51, 494
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 44
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 4 cut(s) 102, 272, 365, 509
SatI GCNGC 2 cut(s) 50, 493
Sau3AI GATC 1 cut(s) 368
SchI GAGTC 1 cut(s) 241
SetI ASST 2 cut(s) 46, 472
SfaNI GCATC 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 2 cut(s) 101, 415
SmoI CTYRAG 2 cut(s) 101, 415
Sse9I AATT 7 cut(s) 53, 79, 222, 269, 295, 446, 452
SsiI CCGC 3 cut(s) 390, 421, 518
TaaI ACNGT 2 cut(s) 277, 382
TaqI TCGA 2 cut(s) 250, 459
TaqII GACCGA 1 cut(s) 252
TasI AATT 7 cut(s) 53, 79, 222, 269, 295, 446, 452
TfiI GAWTC 2 cut(s) 111, 400
Tru1I TTAA 4 cut(s) 102, 272, 365, 509
Tru9I TTAA 4 cut(s) 102, 272, 365, 509
TscAI CASTG 2 cut(s) 121, 502
TseI GCWGC 2 cut(s) 49, 492
TspDTI ATGAA 3 cut(s) 47, 234, 495
TspRI CASTG 2 cut(s) 121, 502
Van91I CCANNNNNTGG 1 cut(s) 44
Vha464I CTTAAG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.