Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003886

Physical Location & Seq

Genomic Coordinates Forward (+)

20559849 .. 20562821

Gene Structure 2973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18560.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGACCAAACTTATCTCCCTCCAAATTTTCAACAGCCATGAATGCCATCCTCATTCTCTCATGGCCATTCTTCTTCTCTCTCTCTCTCCCCACCCACCAAAGCCTCCCCAAAACCCTAATCCCACCACCCCAAAACCCACAATCTCTCTCCCCACCACCACTCCCACCTCCTCCAAAAGAAACTTGATCCTCAAGACAACCTCCCTCTTCCTCATTTCTCTGACCCCTCAGCAATACCCAGTTGCCCATTCTTCACCACAAGCTCCACCGCCGCCTCCAAGACCCGCCCTTTCCGGCATCTCCAACACGAAAAACTGGTTCCAGTTCTTCGGCGATGGGTTCGCCATTAGGGTCCCACCCCAGTTTCAGGACGTTCAGGAGCCTGAGGATTACAACTCGGGATTGTCCCTTTATGGAGATAAGGTAAAGCCCAAGACCTTCGCGGCGCGATTTGCATCTGCTGATGGATATGAGGTTGTGAGTGTTGTTATTCGCCCATCCAATTCACTCAAGATCACCTTTTTAGAGGCCAAAGACATAACAGATTTAGGTTCCTTGAAGGAGGCAGCAAAAATCTTCATTCCAGTTGGATCAACTGTGTACTCTGCCCGAGCTATAAGGATAAAGGAAGAAGAAGGTTTTAGGACTTATTATTTCTACGAGTTCGGTGTACAAGAACAGCATGCAGCGCTTGTAGCTGCTGTTAACGGTGGAAAGACATACATCGCTGGAGCAACTGCCCCGCAGTCTAAGTGGAACGATGATGGCGTGAAGCTTCGCTCAGCTGCTATATCCATGACTGTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

270

Amino Acids

29.41

Weight (kDa)

9.3

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27390 AT5G27390 AT5G27390 AT5G27390
fragaria_vesca	FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310
malus_domestica	MD04G1209500.v1.1 MD12G1224100.v1.1
prunus_persica	Prupe.6G330500_v2.0.a1
pyrus_communis	pycom04g18560 pycom12g20960
rosa_chinensis	RchiOBHm_Chr3g0454051
rosa_laevigata	RLG00000025486
rosa_multiflora	Rmu_sc0012374.1_g000001 Rmu_sc0038647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430860
rosa_rugosa	Rorug02G0652500 Rorug02G0652600 Rorug02G0652700 Rorug02G0652800
rosa_samantha	Rh3AG055500 Rh3BG056900 Rh3CG056200 Rh3DG057500
rosa_wichuraiana	Rw3G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	443, 448
AciI	CCGC	5 cut(s)	269, 272, 285, 443, 743
AclWI	GGATC	2 cut(s)	181, 598
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	24
AfaI	GTAC	2 cut(s)	602, 672
AfeI	AGCGCT	1 cut(s)	690
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	31, 559
AluBI	AGCT	5 cut(s)	263, 614, 698, 775, 785
AluI	AGCT	5 cut(s)	263, 614, 698, 775, 785
AlwI	GGATC	2 cut(s)	181, 598
Ama87I	CYCGRG	2 cut(s)	397, 609
Aor51HI	AGCGCT	1 cut(s)	690
AoxI	GGCC	2 cut(s)	63, 528
ApeKI	GCWGC	4 cut(s)	566, 686, 698, 785
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	448, 691
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	246, 508
AvaI	CYCGRG	2 cut(s)	397, 609
AvaII	GGWCC	1 cut(s)	352
AxyI	CCTNAGG	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	4 cut(s)	578, 685, 698, 772
BccI	CCATC	5 cut(s)	54, 329, 458, 505, 758
BfmI	CTRYAG	1 cut(s)	806
BfoI	RGCGCY	1 cut(s)	692
BisI	GCNGC	6 cut(s)	272, 444, 567, 687, 699, 786
BlpI	GCTNAGC	1 cut(s)	781
BlsI	GCNGC	6 cut(s)	273, 445, 568, 688, 700, 787
Bme18I	GGWCC	1 cut(s)	352
BmeT110I	CYCGRG	2 cut(s)	397, 609
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	5 cut(s)	320, 353, 354, 381, 553
BmrI	ACTGGG	2 cut(s)	233, 355
BmsI	GCATC	2 cut(s)	306, 464
BmuI	ACTGGG	2 cut(s)	233, 355
BpmI	CTGGAG	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	781
BpuEI	CTTGAG	2 cut(s)	176, 494
BsaBI	GATNNNNATC	1 cut(s)	454
BsaXI	ACNNNNNCTCC	4 cut(s)	145, 175, 408, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	5 cut(s)	239, 320, 322, 361, 584
Bse21I	CCTNAGG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	454
BseGI	GGATG	2 cut(s)	46, 497
BseJI	GATNNNNATC	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	3 cut(s)	242, 375, 795
BseNI	ACTGG	5 cut(s)	239, 320, 322, 361, 584
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	4 cut(s)	578, 685, 698, 772
Bsh1236I	CGCG	2 cut(s)	443, 448
BshFI	GGCC	2 cut(s)	65, 530
BsiHKCI	CYCGRG	2 cut(s)	397, 609
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	2 cut(s)	338, 391
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	338, 391
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	65, 530
BsoBI	CYCGRG	2 cut(s)	397, 609
Bsp1407I	TGTACA	1 cut(s)	670
Bsp143I	GATC	3 cut(s)	186, 513, 590
Bsp1720I	GCTNAGC	1 cut(s)	781
BspACI	CCGC	5 cut(s)	269, 272, 285, 443, 743
BspANI	GGCC	2 cut(s)	65, 530
BspCNI	CTCAG	3 cut(s)	241, 376, 794
BspFNI	CGCG	2 cut(s)	443, 448
BspLI	GGNNCC	5 cut(s)	320, 353, 354, 381, 553
BspPI	GGATC	2 cut(s)	181, 598
BsrGI	TGTACA	1 cut(s)	670
BsrI	ACTGG	5 cut(s)	239, 320, 322, 361, 584
BssMI	GATC	3 cut(s)	186, 513, 590
Bst4CI	ACNGT	3 cut(s)	598, 710, 802
Bst6I	CTCTTC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	670
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	4 cut(s)	228, 384, 750, 781
BstF5I	GGATG	2 cut(s)	46, 497
BstFNI	CGCG	2 cut(s)	443, 448
BstH2I	RGCGCY	1 cut(s)	692
BstHHI	GCGC	2 cut(s)	448, 691
BstKTI	GATC	3 cut(s)	189, 516, 593
BstMBI	GATC	3 cut(s)	186, 513, 590
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 452, 688, 695
BstNSI	RCATGY	1 cut(s)	686
BstSFI	CTRYAG	1 cut(s)	806
BstUI	CGCG	2 cut(s)	443, 448
BstV1I	GCAGC	4 cut(s)	578, 685, 698, 772
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	65, 530
BtgZI	GCGATG	2 cut(s)	348, 709
BtsCI	GGATG	2 cut(s)	46, 497
Cac8I	GCNNGC	1 cut(s)	684
CfoI	GCGC	2 cut(s)	448, 691
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	601, 671
CviAII	CATG	4 cut(s)	38, 61, 683, 796
CviQI	GTAC	2 cut(s)	601, 671
DdeI	CTNAG	4 cut(s)	228, 384, 750, 781
DpnI	GATC	3 cut(s)	188, 515, 592
DpnII	GATC	3 cut(s)	186, 513, 590
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	352
Eco47III	AGCGCT	1 cut(s)	690
Eco81I	CCTNAGG	1 cut(s)	384
Eco88I	CYCGRG	2 cut(s)	397, 609
EcoO109I	RGGNCCY	1 cut(s)	352
FaeI	CATG	4 cut(s)	41, 64, 686, 799
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	2 cut(s)	338, 391
FatI	CATG	4 cut(s)	37, 60, 682, 795
FauI	CCCGC	2 cut(s)	292, 750
Fnu4HI	GCNGC	6 cut(s)	272, 444, 567, 687, 699, 786
FokI	GGATG	2 cut(s)	33, 484
Fsp4HI	GCNGC	6 cut(s)	272, 444, 567, 687, 699, 786
GlaI	GCGC	2 cut(s)	447, 690
GluI	GCNGC	6 cut(s)	272, 444, 567, 687, 699, 786
GsuI	CTGGAG	1 cut(s)	750
HaeII	RGCGCY	1 cut(s)	692
HaeIII	GGCC	2 cut(s)	65, 530
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	2 cut(s)	448, 691
Hin1II	CATG	4 cut(s)	41, 64, 686, 799
Hin6I	GCGC	2 cut(s)	446, 689
HinP1I	GCGC	2 cut(s)	446, 689
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	773
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	246, 508
Hpy166II	GTNNAC	3 cut(s)	601, 671, 706
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	5 cut(s)	193, 368, 377, 399, 511
Hpy8I	GTNNAC	3 cut(s)	601, 671, 706
HpyAV	CCTTC	3 cut(s)	448, 553, 629
HpyCH4III	ACNGT	3 cut(s)	598, 710, 802
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	2 cut(s)	455, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 452, 688, 695
HpyF3I	CTNAG	4 cut(s)	228, 384, 750, 781
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	41, 64, 686, 799
HspAI	GCGC	2 cut(s)	446, 689
KflI	GGGWCCC	1 cut(s)	352
KspAI	GTTAAC	1 cut(s)	706
Kzo9I	GATC	3 cut(s)	186, 513, 590
LmnI	GCTCC	3 cut(s)	268, 379, 731
Lsp1109I	GCAGC	4 cut(s)	578, 685, 698, 772
LweI	GCATC	2 cut(s)	306, 464
MaeII	ACGT	1 cut(s)	372
MalI	GATC	3 cut(s)	188, 515, 592
MboI	GATC	3 cut(s)	186, 513, 590
MboII	GAAGA	8 cut(s)	62, 65, 199, 243, 319, 568, 641, 644
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	2 cut(s)	24, 502
MluNI	TGGCCA	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	327, 568
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	705
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	47
MvnI	CGCG	2 cut(s)	443, 448
MwoI	GCNNNNNNNGC	4 cut(s)	42, 452, 688, 695
NdeII	GATC	3 cut(s)	186, 513, 590
NlaIII	CATG	4 cut(s)	41, 64, 686, 799
NlaIV	GGNNCC	5 cut(s)	320, 353, 354, 381, 553
NspI	RCATGY	1 cut(s)	686
PaeI	GCATGC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	1 cut(s)	765
PctI	GAATGC	1 cut(s)	47
PkrI	GCNGC	6 cut(s)	273, 445, 568, 688, 700, 787
PpuMI	RGGWCCY	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	352
PspN4I	GGNNCC	5 cut(s)	320, 353, 354, 381, 553
PspPI	GGNCC	1 cut(s)	352
PspPPI	RGGWCCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	2 cut(s)	602, 672
RsaNI	GTAC	2 cut(s)	601, 671
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	6 cut(s)	272, 444, 567, 687, 699, 786
Sau3AI	GATC	3 cut(s)	186, 513, 590
Sau96I	GGNCC	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	306, 464
SfcI	CTRYAG	1 cut(s)	806
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	191, 509
SmoI	CTYRAG	2 cut(s)	191, 509
SphI	GCATGC	1 cut(s)	686
Sse9I	AATT	2 cut(s)	24, 502
SsiI	CCGC	5 cut(s)	269, 272, 285, 443, 743
TaaI	ACNGT	3 cut(s)	598, 710, 802
TaiI	ACGT	1 cut(s)	375
TasI	AATT	2 cut(s)	24, 502
TatI	WGTACW	2 cut(s)	600, 670
TauI	GCSGC	2 cut(s)	274, 446
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TseI	GCWGC	4 cut(s)	566, 686, 698, 785
TspDTI	ATGAA	2 cut(s)	54, 568
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.