AT5G27620

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003436
Physical Location & Seq
Forward (+)
9771287 .. 9774920
3634 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27620.3

Sequence Viewer

Length: 1011 bp
ATGGCGGATTTTCAGACATCAACACAACGGGCCAAGTGGATTTTCACTCCCCAGAAACTGGCAGAGAGATATAAAGCTGCTAACCAGAGGGCAGTGCAAATGCTGGAGAAGTGTGGAACAACTCAAGTTGAAGTAGATGCTAGTGGATCACTAACATATCCTAAAGATAAAGTTGGTTCAGGAGATCAAGCTGATAAGAAGCTTAAGCCTTTGAGTGCTGATGAAGAAAGGTTCATGAGAGCATTTTATGAGGCAAAGGTCCAAGAAGTGTGCAGTGCCTTTGCATTTCCTCACAAGATTCAGGCAACAGCCCTCCAATACTTTAAGAGATTTTATCTGCAATGGTCTGTTATGCAACATCATCCAAAAGAGATAATGTTAACCTGTGTGTATGCAGCTTGTAAAATAGAGGAGAATCATGTATCTGCTGAGGAAATTGGGAAAGGGATTAACCAAGATCACCGAATAATTCTCAAGTACGAGATGGCTGTTCTTCAGAGTTTGGAATTTGATCTGATTGTTTATGCACCGTATCGTGCAATCGAAGGTTTTGTCAACAACATGGAGGAATTTCTTCAAGCTAGAGATGATGAAATCCAAAAACTAGAGAGTTTGCTCAAAGGGGCGACAGCAGAAGCCGATAAAGTTATGCTCACAGATGCTCCACTCCTCTTTCCTCCTGGCCAGTTGGCATTGGCGTCGTTACGTATTGCAAATGGGGTTCTTGGAGTGATTGACTTTGATAGGTACCTAGAGAACATTGTTTCTCAACCGAACTCTGAGCACACGACTTCAGAGCTTACAAAGTTACTTGATAACATCGAATATTTGGTAAAGAACTACAAGTGCCCAAGTGAAAAGGACATGAAGCATATCAACCGGAAGCTAAAATCTTGTCTAGGACATAGTTCTTCACATGACGAGAGTAAGAAACGGGAGAAGAGATCAAAACACAAGTCCCATAGGAGCTCCAATGATACACCAAACGGGGCACCGCCACCCATAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 ko04110 map03022 map03420 map04110
Pfam Domains
Protein Families
Cyclin_C_2 Cyclin_N

Protein Analysis

336

Amino Acids

38.13

Weight (kDa)

7.64

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 76 - 172 2.9e-11 Cyclin, N-terminal domain
TFIIB PF00382 85 - 147 6.3e-08 Transcription factor TFIIB repeat
Cyclin_C_2 PF16899 177 - 275 2.2e-12 Cyclin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 747, 991
AccB7I CCANNNNNTGG 1 cut(s) 58
AciI CCGC 2 cut(s) 5, 995
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 2 cut(s) 506, 569
AcuI CTGAAG 2 cut(s) 479, 777
AcyI GRCGYC 1 cut(s) 698
AfaI GTAC 2 cut(s) 479, 749
AfiI CCNNNNNNNGG 2 cut(s) 58, 1004
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 2 cut(s) 131, 578
AjnI CCWGG 1 cut(s) 679
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 8 cut(s) 77, 191, 202, 398, 581, 799, 886, 969
AluI AGCT 8 cut(s) 77, 191, 202, 398, 581, 799, 886, 969
Alw21I GWGCWC 2 cut(s) 786, 971
AlwI GGATC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 58
AoxI GGCC 2 cut(s) 30, 682
ApeKI GCWGC 2 cut(s) 77, 395
ApoI RAATTY 2 cut(s) 506, 569
ArsI GACNNNNNNTTYG 4 cut(s) 537, 569, 941, 973
Asp700I GAANNNNTTC 1 cut(s) 573
Asp718I GGTACC 1 cut(s) 747
AspS9I GGNCC 2 cut(s) 30, 259
AsuHPI GGTGA 1 cut(s) 452
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 2 cut(s) 851, 994
BalI TGGCCA 1 cut(s) 684
BanI GGYRCC 2 cut(s) 747, 991
BanII GRGCYC 1 cut(s) 971
Bbv12I GWGCWC 2 cut(s) 786, 971
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 2 cut(s) 64, 407
BccI CCATC 1 cut(s) 478
BcgI CGANNNNNNTGC 2 cut(s) 681, 715
BciT130I CCWGG 1 cut(s) 681
BfaI CTAG 5 cut(s) 141, 582, 605, 752, 899
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 2 cut(s) 78, 396
BlsI GCNGC 2 cut(s) 79, 397
Bme1390I CCNGG 1 cut(s) 681
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 30, 259
BmiI GGNNCC 2 cut(s) 749, 993
BmrFI CCNGG 1 cut(s) 681
BmsI GCATC 2 cut(s) 127, 649
BpmI CTGGAG 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 108, 458
BsaAI YACGTR 1 cut(s) 707
BsaHI GRCGYC 1 cut(s) 698
BsaWI WCCGGW 1 cut(s) 879
BsaXI ACNNNNNCTCC 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 1004
Bse1I ACTGG 2 cut(s) 63, 685
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 681
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 58, 1004
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 420, 771
BseNI ACTGG 2 cut(s) 63, 685
BseRI GAGGAG 2 cut(s) 425, 659
BseSI GKGCMC 2 cut(s) 851, 994
BseXI GCAGC 2 cut(s) 64, 407
BsgI GTGCAG 1 cut(s) 292
BshFI GGCC 2 cut(s) 32, 684
BshNI GGYRCC 2 cut(s) 747, 991
BsiHKAI GWGCWC 2 cut(s) 786, 971
BsiSI CCGG 1 cut(s) 880
BslFI GGGAC 1 cut(s) 943
BslI CCNNNNNNNGG 2 cut(s) 58, 1004
BsmFI GGGAC 1 cut(s) 943
BsnI GGCC 2 cut(s) 32, 684
Bsp1286I GDGCHC 4 cut(s) 786, 851, 971, 994
Bsp143I GATC 5 cut(s) 146, 184, 457, 511, 944
BspACI CCGC 2 cut(s) 5, 995
BspANI GGCC 2 cut(s) 32, 684
BspCNI CTCAG 2 cut(s) 421, 772
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 749, 993
BspPI GGATC 1 cut(s) 154
BspT107I GGYRCC 2 cut(s) 747, 991
BspTI CTTAAG 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 2 cut(s) 63, 685
BssMI GATC 5 cut(s) 146, 184, 457, 511, 944
BssNI GRCGYC 1 cut(s) 698
Bst2UI CCWGG 1 cut(s) 681
Bst4CI ACNGT 1 cut(s) 531
Bst6I CTCTTC 1 cut(s) 935
BstACI GRCGYC 1 cut(s) 698
BstAFI CTTAAG 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 707
BstDEI CTNAG 2 cut(s) 429, 780
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 5 cut(s) 149, 187, 460, 514, 947
BstMBI GATC 5 cut(s) 146, 184, 457, 511, 944
BstNI CCWGG 1 cut(s) 681
BstSCI CCNGG 1 cut(s) 679
BstSLI GKGCMC 2 cut(s) 851, 994
BstSNI TACGTA 1 cut(s) 707
BstV1I GCAGC 2 cut(s) 64, 407
BsuRI GGCC 2 cut(s) 32, 684
BtsCI GGATG 1 cut(s) 361
BtsI GCAGTG 2 cut(s) 99, 280
BtsIMutI CAGTG 2 cut(s) 99, 280
CaiI CAGNNNCTG 1 cut(s) 58
CciI TCATGA 1 cut(s) 234
Cfr13I GGNCC 2 cut(s) 30, 259
CseI GACGC 1 cut(s) 687
Csp6I GTAC 2 cut(s) 478, 748
CviAII CATG 5 cut(s) 235, 419, 562, 865, 917
CviQI GTAC 2 cut(s) 478, 748
DdeI CTNAG 2 cut(s) 429, 780
DpnI GATC 5 cut(s) 148, 186, 459, 513, 946
DpnII GATC 5 cut(s) 146, 184, 457, 511, 944
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 935
EarI CTCTTC 1 cut(s) 935
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 969
Eco105I TACGTA 1 cut(s) 707
Eco24I GRGCYC 1 cut(s) 971
Eco47I GGWCC 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 969
Eco57I CTGAAG 2 cut(s) 479, 777
EcoICRI GAGCTC 1 cut(s) 969
EcoRII CCWGG 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 971
FaeI CATG 5 cut(s) 238, 422, 565, 868, 920
FaqI GGGAC 1 cut(s) 943
FatI CATG 5 cut(s) 234, 418, 561, 864, 916
Fnu4HI GCNGC 2 cut(s) 78, 396
FokI GGATG 1 cut(s) 348
FriOI GRGCYC 1 cut(s) 971
Fsp4HI GCNGC 2 cut(s) 78, 396
FspBI CTAG 5 cut(s) 141, 582, 605, 752, 899
GluI GCNGC 2 cut(s) 78, 396
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 32, 684
HapII CCGG 1 cut(s) 880
HgaI GACGC 1 cut(s) 687
Hin1I GRCGYC 1 cut(s) 698
Hin1II CATG 5 cut(s) 238, 422, 565, 868, 920
HincII GTYRAC 2 cut(s) 381, 556
HindII GTYRAC 2 cut(s) 381, 556
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 2 cut(s) 298, 415
HpaI GTTAAC 1 cut(s) 381
HpaII CCGG 1 cut(s) 880
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 2 cut(s) 381, 556
Hpy188I TCNGA 5 cut(s) 15, 498, 516, 781, 796
Hpy188III TCNNGA 2 cut(s) 180, 235
Hpy8I GTNNAC 2 cut(s) 381, 556
Hpy99I CGWCG 1 cut(s) 703
HpyAV CCTTC 1 cut(s) 539
HpyCH4III ACNGT 1 cut(s) 531
HpyCH4IV ACGT 1 cut(s) 706
HpyCH4V TGCA 9 cut(s) 97, 273, 284, 340, 355, 395, 527, 539, 713
HpyF3I CTNAG 2 cut(s) 429, 780
HpySE526I ACGT 1 cut(s) 706
Hsp92I GRCGYC 1 cut(s) 698
Hsp92II CATG 5 cut(s) 238, 422, 565, 868, 920
KpnI GGTACC 1 cut(s) 751
KspAI GTTAAC 1 cut(s) 381
Kzo9I GATC 5 cut(s) 146, 184, 457, 511, 944
LmnI GCTCC 3 cut(s) 667, 966, 974
Lsp1109I GCAGC 2 cut(s) 64, 407
LweI GCATC 2 cut(s) 127, 649
MaeI CTAG 5 cut(s) 141, 582, 605, 752, 899
MaeII ACGT 1 cut(s) 706
MaeIII GTNAC 2 cut(s) 702, 807
MalI GATC 5 cut(s) 148, 186, 459, 513, 946
MboI GATC 5 cut(s) 146, 184, 457, 511, 944
MboII GAAGA 5 cut(s) 236, 485, 566, 903, 952
MhlI GDGCHC 4 cut(s) 786, 851, 971, 994
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 4 cut(s) 435, 468, 506, 569
MluNI TGGCCA 1 cut(s) 684
MnlI CCTC 9 cut(s) 81, 244, 300, 323, 403, 424, 559, 680, 687
Mox20I TGGCCA 1 cut(s) 684
MroXI GAANNNNTTC 1 cut(s) 573
MscI TGGCCA 1 cut(s) 684
MseI TTAA 4 cut(s) 204, 324, 380, 450
Msp20I TGGCCA 1 cut(s) 684
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 1 cut(s) 880
MspR9I CCNGG 1 cut(s) 681
MvaI CCWGG 1 cut(s) 681
NdeII GATC 5 cut(s) 146, 184, 457, 511, 944
NlaIII CATG 5 cut(s) 238, 422, 565, 868, 920
NlaIV GGNNCC 2 cut(s) 749, 993
PagI TCATGA 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 2 cut(s) 298, 415
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 2 cut(s) 79, 397
Ppu21I YACGTR 1 cut(s) 707
Psp124BI GAGCTC 1 cut(s) 971
Psp6I CCWGG 1 cut(s) 679
PspGI CCWGG 1 cut(s) 679
PspN4I GGNNCC 2 cut(s) 749, 993
PspPI GGNCC 2 cut(s) 30, 259
PstNI CAGNNNCTG 1 cut(s) 58
RsaI GTAC 2 cut(s) 479, 749
RsaNI GTAC 2 cut(s) 478, 748
SacI GAGCTC 1 cut(s) 971
SaqAI TTAA 4 cut(s) 204, 324, 380, 450
SatI GCNGC 2 cut(s) 78, 396
Sau3AI GATC 5 cut(s) 146, 184, 457, 511, 944
Sau96I GGNCC 2 cut(s) 30, 259
ScrFI CCNGG 1 cut(s) 681
SduI GDGCHC 4 cut(s) 786, 851, 971, 994
SfaNI GCATC 2 cut(s) 127, 649
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 3 cut(s) 123, 203, 473
SmoI CTYRAG 3 cut(s) 123, 203, 473
SnaBI TACGTA 1 cut(s) 707
Sse9I AATT 4 cut(s) 435, 468, 506, 569
SsiI CCGC 2 cut(s) 5, 995
SspI AATATT 1 cut(s) 827
SspMI CTAG 5 cut(s) 141, 582, 605, 752, 899
SstI GAGCTC 1 cut(s) 971
StyD4I CCNGG 1 cut(s) 679
TaaI ACNGT 1 cut(s) 531
TaiI ACGT 1 cut(s) 709
TaqI TCGA 2 cut(s) 543, 822
TasI AATT 4 cut(s) 435, 468, 506, 569
TfiI GAWTC 2 cut(s) 298, 415
Tru1I TTAA 4 cut(s) 204, 324, 380, 450
Tru9I TTAA 4 cut(s) 204, 324, 380, 450
TscAI CASTG 2 cut(s) 99, 280
TseI GCWGC 2 cut(s) 77, 395
TspDTI ATGAA 4 cut(s) 223, 237, 606, 881
TspRI CASTG 2 cut(s) 99, 280
Van91I CCANNNNNTGG 1 cut(s) 58
Vha464I CTTAAG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 2 cut(s) 506, 569
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 5 cut(s) 141, 582, 605, 752, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.