Prupe.6G323600_v2.0.a1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003436
Physical Location & Seq
Reverse (-)
28510098 .. 28514983
4886 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G323600.2

Sequence Viewer

Length: 1014 bp
ATGGCTGATTTCCAGACCTCGACTCACCGAGCCAAGTGGATCTTCACGCCTGAAGAACTGGTCGGTAAATACAAGGCTGCTAATCAAAGAGCAATACAAACATTGGAGAAGTATGGAGCAACACTAATGGAAGTAGATGTTGATGGCACAATATCATACCCTGAACCTCAAGTTATTGCAAAAGATAATGCTGACAAGCATTCTCGTCCAAAACCCATTAGCATTGAAGAGGAGCAGTTTATGCGAGTATTTTATGAAAATAAACTTCAAGAAGTGTGCAAAAACTTTCACTTCCCTCATAAAGTTCAGGCAACAGCTCTTATATATTTCAAAAGGTTTTATCTACAATGGTCGGTGATGCAACATCATCCAAAAAATATAATGTTAACCTGTATATATGCGGCTTGTAAAATAGAAGAAAACCACGTATCAGCAGAGGAGCTTGGTAAGGGGATCTCACAGGATCATCAAATGATACTCAATAATGAGATGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTTTATGCACCATATCGCTCAATTGAAGGTTTTATCGATGATATGGAGGAATTCTGTGGAATAAACGATGATCGACTCCAAATTCTGCAGAATTTGCTTCATGCTGCAAAGATGGAAGTGGATAAAATCATGCTCACGGATGCACCACTTCTATTCCCTCCTGGGCAGTTGGCATTGGCTGCTTTGCGTAGTGCAAATCAGGTGCACAAAGTTGTTGACTTTGAGAGATACCTGAGGAGCATTCTCTCTCGTCAGAGTTCTGAACATACCGTTTCAGAGCTAGTTGAATTCCTTAATGCAATAGATTCTTGGGCAAGAAAATACAAGTTTCCTTCAGACAAGGATCTCAAGCACATCAACCGAAAACTGAAATCTTGTTGGGGTCTTAGTTCACATGACGAAAGTAAGAAGCGGGATAAGAAATCGAAGCACAAGTCGAAGAGGAGCTCAAATGAAGTGCAACCTGTACCTTCTCATACTGAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 ko04110 map03022 map03420 map04110
Pfam Domains
Protein Families
Cyclin_C_2 Cyclin_N

Protein Analysis

338

Amino Acids

39.13

Weight (kDa)

6.95

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 401, 937
AclWI GGATC 4 cut(s) 47, 461, 471, 876
AcsI RAATTY 5 cut(s) 512, 575, 606, 616, 812
AcuI CTGAAG 2 cut(s) 72, 843
AfaI GTAC 1 cut(s) 993
AgsI TTSAA 5 cut(s) 227, 269, 331, 551, 812
AjnI CCWGG 1 cut(s) 685
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 4 cut(s) 317, 442, 805, 972
AluI AGCT 4 cut(s) 317, 442, 805, 972
Alw21I GWGCWC 2 cut(s) 732, 974
Alw44I GTGCAC 1 cut(s) 728
AlwI GGATC 4 cut(s) 47, 461, 471, 876
ApaLI GTGCAC 1 cut(s) 728
ApeKI GCWGC 3 cut(s) 77, 629, 704
ApoI RAATTY 5 cut(s) 512, 575, 606, 616, 812
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
AsuHPI GGTGA 2 cut(s) 17, 367
AxyI CCTNAGG 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 974
Bbv12I GWGCWC 2 cut(s) 732, 974
BbvI GCAGC 3 cut(s) 64, 616, 691
BccI CCATC 2 cut(s) 137, 631
BciT130I CCWGG 1 cut(s) 687
BfaI CTAG 1 cut(s) 806
BfmI CTRYAG 1 cut(s) 611
BisI GCNGC 4 cut(s) 78, 402, 630, 705
BlsI GCNGC 4 cut(s) 79, 403, 631, 706
Bme1390I CCNGG 1 cut(s) 687
BmrFI CCNGG 1 cut(s) 687
BmsI GCATC 2 cut(s) 348, 655
BpuEI CTTGAG 2 cut(s) 153, 857
Bsa29I ATCGAT 1 cut(s) 561
BsaAI YACGTR 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 686
Bse1I ACTGG 1 cut(s) 63
Bse21I CCTNAGG 1 cut(s) 758
BseBI CCWGG 1 cut(s) 687
BseCI ATCGAT 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 686
BseGI GGATG 2 cut(s) 367, 670
BseMII CTCAG 1 cut(s) 749
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 4 cut(s) 245, 452, 775, 982
BseSI GKGCMC 1 cut(s) 732
BseXI GCAGC 3 cut(s) 64, 616, 691
BshVI ATCGAT 1 cut(s) 561
BsiHKAI GWGCWC 2 cut(s) 732, 974
BsmI GAATGC 2 cut(s) 199, 765
Bsp1286I GDGCHC 2 cut(s) 732, 974
Bsp143I GATC 6 cut(s) 39, 453, 463, 517, 595, 868
BspACI CCGC 2 cut(s) 401, 937
BspCNI CTCAG 1 cut(s) 750
BspDI ATCGAT 1 cut(s) 561
BspMAI CTGCAG 1 cut(s) 615
BspPI GGATC 4 cut(s) 47, 461, 471, 876
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 686
BssMI GATC 6 cut(s) 39, 453, 463, 517, 595, 868
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 1 cut(s) 796
Bst6I CTCTTC 2 cut(s) 222, 959
BstAPI GCANNNNNTGC 3 cut(s) 241, 619, 704
BstBAI YACGTR 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 758, 911
BstF5I GGATG 2 cut(s) 367, 670
BstKTI GATC 6 cut(s) 42, 456, 466, 520, 598, 871
BstMBI GATC 6 cut(s) 39, 453, 463, 517, 595, 868
BstMWI GCNNNNNNNGC 3 cut(s) 241, 619, 704
BstNI CCWGG 1 cut(s) 687
BstSCI CCNGG 1 cut(s) 685
BstSFI CTRYAG 1 cut(s) 611
BstSLI GKGCMC 1 cut(s) 732
BstV1I GCAGC 3 cut(s) 64, 616, 691
BstX2I RGATCY 3 cut(s) 39, 453, 868
BstYI RGATCY 3 cut(s) 39, 453, 868
Bsu15I ATCGAT 1 cut(s) 561
Bsu36I CCTNAGG 1 cut(s) 758
BsuTUI ATCGAT 1 cut(s) 561
BtsCI GGATG 2 cut(s) 367, 670
ClaI ATCGAT 1 cut(s) 561
Csp6I GTAC 1 cut(s) 992
CviAII CATG 3 cut(s) 626, 655, 920
CviJI RGCY 9 cut(s) 5, 32, 77, 317, 404, 442, 704, 805, 972
CviKI_1 RGCY 9 cut(s) 5, 32, 77, 317, 404, 442, 704, 805, 972
CviQI GTAC 1 cut(s) 992
DdeI CTNAG 2 cut(s) 758, 911
DpnI GATC 6 cut(s) 41, 455, 465, 519, 597, 870
DpnII GATC 6 cut(s) 39, 453, 463, 517, 595, 868
Eam1104I CTCTTC 2 cut(s) 222, 959
EarI CTCTTC 2 cut(s) 222, 959
Ecl136II GAGCTC 1 cut(s) 972
Eco24I GRGCYC 1 cut(s) 974
Eco53kI GAGCTC 1 cut(s) 972
Eco57I CTGAAG 2 cut(s) 72, 843
Eco81I CCTNAGG 1 cut(s) 758
EcoICRI GAGCTC 1 cut(s) 972
EcoRI GAATTC 2 cut(s) 575, 812
EcoRII CCWGG 1 cut(s) 685
EcoT38I GRGCYC 1 cut(s) 974
FaeI CATG 3 cut(s) 629, 658, 923
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 3 cut(s) 625, 654, 919
FauI CCCGC 1 cut(s) 930
Fnu4HI GCNGC 4 cut(s) 78, 402, 630, 705
FokI GGATG 2 cut(s) 354, 677
FriOI GRGCYC 1 cut(s) 974
Fsp4HI GCNGC 4 cut(s) 78, 402, 630, 705
FspBI CTAG 1 cut(s) 806
GluI GCNGC 4 cut(s) 78, 402, 630, 705
Hin1II CATG 3 cut(s) 629, 658, 923
HincII GTYRAC 2 cut(s) 387, 742
HindII GTYRAC 2 cut(s) 387, 742
HinfI GANTC 3 cut(s) 22, 600, 830
HpaI GTTAAC 1 cut(s) 387
HphI GGTGA 2 cut(s) 17, 367
Hpy166II GTNNAC 4 cut(s) 387, 730, 742, 917
Hpy188I TCNGA 5 cut(s) 504, 780, 787, 802, 862
Hpy188III TCNNGA 2 cut(s) 13, 269
Hpy8I GTNNAC 4 cut(s) 387, 730, 742, 917
HpyAV CCTTC 3 cut(s) 545, 867, 1005
HpyCH4III ACNGT 1 cut(s) 796
HpyCH4IV ACGT 1 cut(s) 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 619, 704
HpyF3I CTNAG 2 cut(s) 758, 911
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 3 cut(s) 629, 658, 923
KspAI GTTAAC 1 cut(s) 387
Kzo9I GATC 6 cut(s) 39, 453, 463, 517, 595, 868
LmnI GCTCC 5 cut(s) 116, 232, 439, 762, 969
Lsp1109I GCAGC 3 cut(s) 64, 616, 691
LweI GCATC 2 cut(s) 348, 655
MaeI CTAG 1 cut(s) 806
MaeII ACGT 1 cut(s) 426
MalI GATC 6 cut(s) 41, 455, 465, 519, 597, 870
MboI GATC 6 cut(s) 39, 453, 463, 517, 595, 868
MboII GAAGA 5 cut(s) 34, 65, 239, 428, 976
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 3 cut(s) 39, 453, 868
MhlI GDGCHC 2 cut(s) 732, 974
MluCI AATT 6 cut(s) 512, 546, 575, 606, 616, 812
MlyI GAGTC 2 cut(s) 16, 594
MnlI CCTC 9 cut(s) 28, 177, 223, 306, 430, 565, 693, 753, 960
MseI TTAA 2 cut(s) 386, 819
MspR9I CCNGG 1 cut(s) 687
MunI CAATTG 1 cut(s) 546
Mva1269I GAATGC 2 cut(s) 199, 765
MvaI CCWGG 1 cut(s) 687
MwoI GCNNNNNNNGC 3 cut(s) 241, 619, 704
NdeII GATC 6 cut(s) 39, 453, 463, 517, 595, 868
NlaIII CATG 3 cut(s) 629, 658, 923
PctI GAATGC 2 cut(s) 199, 765
PfeI GAWTC 1 cut(s) 830
PkrI GCNGC 4 cut(s) 79, 403, 631, 706
PleI GAGTC 2 cut(s) 16, 594
PpsI GAGTC 2 cut(s) 16, 594
Ppu21I YACGTR 1 cut(s) 427
Psp124BI GAGCTC 1 cut(s) 974
Psp6I CCWGG 1 cut(s) 685
PspGI CCWGG 1 cut(s) 685
PstI CTGCAG 1 cut(s) 615
PsuI RGATCY 3 cut(s) 39, 453, 868
RsaI GTAC 1 cut(s) 993
RsaNI GTAC 1 cut(s) 992
SacI GAGCTC 1 cut(s) 974
SaqAI TTAA 2 cut(s) 386, 819
SatI GCNGC 4 cut(s) 78, 402, 630, 705
Sau3AI GATC 6 cut(s) 39, 453, 463, 517, 595, 868
SchI GAGTC 2 cut(s) 16, 594
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 2 cut(s) 732, 974
SfaNI GCATC 2 cut(s) 348, 655
SfcI CTRYAG 1 cut(s) 611
SmlI CTYRAG 2 cut(s) 168, 872
SmoI CTYRAG 2 cut(s) 168, 872
Sse9I AATT 6 cut(s) 512, 546, 575, 606, 616, 812
SsiI CCGC 2 cut(s) 401, 937
SspMI CTAG 1 cut(s) 806
SstI GAGCTC 1 cut(s) 974
StyD4I CCNGG 1 cut(s) 685
TaaI ACNGT 1 cut(s) 796
TaiI ACGT 1 cut(s) 429
TaqI TCGA 5 cut(s) 20, 561, 598, 950, 962
TasI AATT 6 cut(s) 512, 546, 575, 606, 616, 812
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 1 cut(s) 830
Tru1I TTAA 2 cut(s) 386, 819
Tru9I TTAA 2 cut(s) 386, 819
TseI GCWGC 3 cut(s) 77, 629, 704
TspDTI ATGAA 3 cut(s) 270, 614, 993
TspGWI ACGGA 1 cut(s) 677
VneI GTGCAC 1 cut(s) 728
XapI RAATTY 5 cut(s) 512, 575, 606, 616, 812
XspI CTAG 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.