Rorug03G0005200

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003436
Physical Location & Seq
Reverse (-)
416257 .. 422702
6446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0005200.1

Sequence Viewer

Length: 3108 bp
ATGGCGCTCAGAGTTTCTCCTTCTTCTATACTCTGCAACTGCAACGCAACTCCTTCGCATAACAATGCCAACTCACTCTCATCCCACGCGCTCCATGCCTCCTACATCCGACGCGCCGTCGAGCTCGCCGATAAATCCGCCGGCTTCACCTCTCCCCACCCCAACTTCGGCTGCGTCATCGCCACTCCTTCCGGCAAAGTCGCCGGCGAGGGCTTCCTCTACGCCCAGGGCACCAGGCCCGCCGAGGTCCTCGCCGTCGAGGCCGCCGGACAGCTCTCCCGCCAGGCCACCGCTTATCTCAACATGGAGCCCGGCGACTGCCACGGCGACCACTCCGCCGTCTCCGCCCTCGTTCAGGGCGGGGTTGAAAGAGTGGTGATTGGGTTGAGGCATCCACTGCAGCATCTAAGAGGCAATGCCATAAGGGCATTGAGAAGTCAAGGCTTGCAAGTTGAGGTGCTCGGTGAGGACCTCAACAGCAAACTCATCGAGGAAGCTCGGAAGTCGTGCCTACTGGCTAATGCTCCGTTAATTTGTAGAGCTGCTTCTCGAGTCCCCTTCTCTGTTCTCAAGTTTGCTATGACCCTTGATGGAAAAATTGCTGCTTCCAGTGGACATGCATCATGGATAAGCAGCAAGACATCTAGAAATCGAGTTTTTGAACTGCGGGGTACAAGTGATGCCATCATTGTAGGGGGAAACACAGCGCGCAGGGACAATCCGAGGCTAACTGCCAGGCATGGAGGTGGCCATATGCCCATGCGGATTGTAATGACACAGACACTTGATCTCCCTGAGGAAGCAAACCTTTGGGATACCTCTGATGTTTCTACTATAGTTGTGACACAAAGGGGTGCCAGAAGGAGTTTCCAGAAATTTCTTGCATCTAAAGGAATTGAAGTCGTGGAGTTTGACATCTTAAACCCCAGAGAAGTAATGGAGTACTTCCATGATCGTGGATATCTTTCAATTTTGTGGGAGTGTGGAGGGACACTATCTGCAGCCGCTATTTCATCTGGAGTAATACATAAGGTCTTTGCTTTTGTTGCTCCTAAGATAATTGGTGGAAAAAATGCTCCATCCCCTGTAGGTGAACTTGGGATGGTTGAAATGACACAAGCCTTGGATTTAATTGATGTTTGCTATGAACAGGTTGGACCTGACATGCTTGTTAGTGGTTTTCTTCAACCCATACCAGATCTGACGCCTGTTATTCCATCAGTTGATGAAACATATGAAATTGATCCAACTGTCACTCCTTATGAATCAAGAATCATATTCTTTTACAAAACATGGGATCCTTATGGCGCTTTCTCAAATTTCTCTCCTCACCCAATTAAGATGCTTGATGTTGATGGTGATTATTCCACTTGGTTGAGTGTAGAGCATTACTACCAGGCTCACAAGTTTGTTGGGGTGGATGATCCTGTGGCACGAGATTGTGTTGAAAATATCAAGTCTGCAAAAAGTCCGGAAGAAGCAGCACGAATAGGAAGATCAATGCAGAGGCAGCACCCTTATTTGGTAAGATCCGACTGGGAAAGTGTCAAGATTGATGTGATGTACAGGGCACTAAAATGCAAGTTCTCAATATACCCACATTTGAATTCTATGTTGCTGTCAACTGCTGGATCTGTTCTTGTTGAAGCTTCACCGCATGATCTTTTCTGGGGTGGAGGCCGGGATGGAGAAGGCCTAAACTATTTGGGGAGGCTTTTGATGCAGTTGAGATCAGAGTTTCTTGTCATCCTTTTTCTTCTGTATTGGAAGACCCTTGCTCAAAATGATATAAAGTTGCCCCCAGGGCCAAGGAAGCTTCCTCTTATTGGGAACTTGCACCGGTTGGCTTGGGTTGCTCTGACAGCAACTGAGGTCCGTTTACCACATCATTCCCTAAGAAACTTGGCCAAGAAATATGGTCCTATCTTGCACCTCAAACTGGGACAAGTATCATCCACTGTCATTTCATCCCCTGAATTAGCCCATGAGGTGTTGAAGACGCATGCCTCTGCTTTCGCAGGACGGCCTACTGCTCTTGCAATAGAACTCACTTCCTATAATCATTCAGGTATCGCCTCTAGTCCTTATAATGATTATTGGAGGCAAATGCGAAAAGTTTGTGTGTTGGAACTCCTTAGTGCGAAGCGTGTGCAGTCATTTGCATCAATGAGAGAAGAAGAGGCATGGAATCTTGTTCAATCAATTTACTCCTTATCACAGCCACAGGGTCATGACCTTGATCATCCAGTAATTCTCAACCTTAGTGAGATGATTTTCTCCGCAGTTAACAGCATTACTGCTCGTGCAGCCTTTGGAAAAAGGTGCAAATACCAACATGAATTTACATCATTGGTCAAGGAATTAAATGTGCTCGCCACAGATTCCTCTGTTATGTCACAACTCACAAGTACCAAGTCTGCCGTTGAGAAAATACACCGAAAGCTGGATAGGATTCTTGAAGAAATCATAAATGATCATAAACTGAAAAGACAGACCATTGCAGCCATTAGCAATGATAAATCAGCTGGTGGCGGTCACCTGCAGGAAGATGAAGATCTAGTTGATGTGCTTCTACAACTTCAGGAGTCTGGTGAGCTTCAATTTGATCTCACAACCAACAATATCAAATCGGTCACCCTAGATATATATTCTGCTGGAAGTGCCACTTCAGCAATGACCATAGAGTGGGCAATGTCAGAACTCCTGAGAAATCCAAGAGCAATGGAGAAAGCACAAGCCGAGATACGCAAACTTGTTGCAGGAAAGAAGAAAATTCAAGAGGCTGACATTAAGAAACTAGACTACATGAAGTTGGTTATAAAAGAAACGCTACGATTGCACCCTCCTCTTGCCTTAATCCCAAGACAGGCAGGGGCGGAACCAGGATTTGACATCTGGGGGGGGGTCCAGACATATATTGAAGAGACCCGAAACATTGGGGGGACAAGGTTCAAGCCTGAGAGGTTCCAAGGTTCTTTCATTGATTTTCGAGGGACCAACTTTGTGTTTCTTCCATTTGGGGCCGTTAAGAGAATGTGTCCAGGCATATCATTCGGAACTGCAACTATTGAGCTTGCGCTTTCTCACTTGCTCTGCTCCTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 ko04110 map03022 map03420 map04110
Pfam Domains
Protein Families
Cyclin_C_2 Cyclin_N

Protein Analysis

1035

Amino Acids

114.25

Weight (kDa)

8.07

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RibD_C PF01872 187 - 390 4.9e-41 RibD C-terminal domain
NADAR PF08719 427 - 580 5.8e-35 NADAR domain
p450 PF00067 600 - 957 2.2e-55 Cytochrome P450
p450 PF00067 983 - 1034 1.7e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2088, 2819
AarI CACCTGC 1 cut(s) 2547
Acc36I ACCTGC 1 cut(s) 2547
AccB1I GGYRCC 2 cut(s) 230, 854
AccB7I CCANNNNNTGG 1 cut(s) 2685
AccII CGCG 3 cut(s) 89, 114, 709
AccIII TCCGGA 1 cut(s) 1471
AclWI GGATC 6 cut(s) 1238, 1292, 1305, 1418, 1524, 1639
AcoI YGGCCR 2 cut(s) 748, 1905
AcsI RAATTY 5 cut(s) 875, 1318, 1606, 2339, 2772
AcuI CTGAAG 2 cut(s) 2564, 2652
AcyI GRCGYC 1 cut(s) 1205
AfaI GTAC 4 cut(s) 673, 944, 1565, 2410
AfiI CCNNNNNNNGG 8 cut(s) 167, 355, 1522, 1826, 1939, 2443, 2685, 2866
AgeI ACCGGT 1 cut(s) 1839
AhdI GACNNNNNGTC 1 cut(s) 116
AjnI CCWGG 8 cut(s) 225, 233, 282, 734, 1395, 1801, 2881, 3040
Alw21I GWGCWC 3 cut(s) 126, 462, 2373
Alw26I GTCTC 2 cut(s) 346, 2918
AlwI GGATC 6 cut(s) 1238, 1292, 1305, 1418, 1524, 1639
AlwNI CAGNNNCTG 1 cut(s) 1868
Ama87I CYCGRG 1 cut(s) 549
Aor13HI TCCGGA 1 cut(s) 1471
ApoI RAATTY 5 cut(s) 875, 1318, 1606, 2339, 2772
AsiGI ACCGGT 1 cut(s) 1839
AspLEI GCGC 7 cut(s) 7, 91, 116, 709, 711, 1310, 3079
AsuC2I CCSGG 2 cut(s) 312, 1682
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 7 cut(s) 247, 469, 1157, 1873, 1919, 2905, 2994
AxyI CCTNAGG 1 cut(s) 795
BaeGI GKGCMC 2 cut(s) 233, 1573
BalI TGGCCA 2 cut(s) 750, 1907
BamHI GGATCC 1 cut(s) 1297
BanI GGYRCC 2 cut(s) 230, 854
BanII GRGCYC 2 cut(s) 126, 312
BarI GAAGNNNNNNTAC 2 cut(s) 529, 561
BauI CACGAG 2 cut(s) 1434, 2301
BbsI GAAGAC 2 cut(s) 1775, 2003
Bbv12I GWGCWC 3 cut(s) 126, 462, 2373
BccI CCATC 7 cut(s) 584, 692, 1087, 1096, 1225, 1349, 1679
BceAI ACGGC 7 cut(s) 101, 239, 323, 340, 2039, 2405, 3008
BcgI CGANNNNNNTGC 8 cut(s) 36, 70, 469, 503, 2131, 2165, 3034, 3068
BciT130I CCWGG 8 cut(s) 227, 235, 284, 736, 1397, 1803, 2883, 3042
BciVI GTATCC 1 cut(s) 808
BclI TGATCA 2 cut(s) 2239, 2473
BcnI CCSGG 2 cut(s) 312, 1682
BcoDI GTCTC 2 cut(s) 346, 2918
BfaI CTAG 5 cut(s) 645, 2079, 2558, 2639, 2798
BfmI CTRYAG 5 cut(s) 398, 834, 999, 1086, 2540
BfoI RGCGCY 2 cut(s) 8, 1311
BfuAI ACCTGC 1 cut(s) 2547
BfuI GTATCC 1 cut(s) 808
BglI GCCNNNNNGGC 3 cut(s) 260, 425, 1804
BglII AGATCT 2 cut(s) 1198, 2554
BmcAI AGTACT 1 cut(s) 944
Bme18I GGWCC 7 cut(s) 247, 469, 1157, 1873, 1919, 2905, 2994
BmeRI GACNNNNNGTC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 549
BmiI GGNNCC 9 cut(s) 232, 309, 856, 1299, 2880, 2906, 2966, 2995, 3022
BmrI ACTGGG 2 cut(s) 1546, 1949
BmsI GCATC 8 cut(s) 400, 412, 629, 670, 893, 1332, 1710, 2171
BmuI ACTGGG 2 cut(s) 1546, 1949
BpiI GAAGAC 2 cut(s) 1775, 2003
BpmI CTGGAG 1 cut(s) 1038
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 2 cut(s) 312, 1682
BsaBI GATNNNNATC 1 cut(s) 2553
BsaHI GRCGYC 1 cut(s) 1205
BsaI GGTCTC 1 cut(s) 2918
BsaWI WCCGGW 2 cut(s) 1471, 1839
BsaXI ACNNNNNCTCC 4 cut(s) 774, 804, 1240, 1270
Bsc4I CCNNNNNNNGG 8 cut(s) 167, 355, 1522, 1826, 1939, 2443, 2685, 2866
Bse118I RCCGGY 3 cut(s) 140, 203, 1839
Bse1I ACTGG 5 cut(s) 519, 609, 1541, 1944, 2246
Bse21I CCTNAGG 1 cut(s) 795
Bse3DI GCAATG 6 cut(s) 421, 2496, 2518, 2679, 2697, 2727
Bse8I GATNNNNATC 1 cut(s) 2553
BseAI TCCGGA 1 cut(s) 1471
BseBI CCWGG 8 cut(s) 227, 235, 284, 736, 1397, 1803, 2883, 3042
BseJI GATNNNNATC 1 cut(s) 2553
BseLI CCNNNNNNNGG 8 cut(s) 167, 355, 1522, 1826, 1939, 2443, 2685, 2866
BseMI GCAATG 6 cut(s) 421, 2496, 2518, 2679, 2697, 2727
BseMII CTCAG 5 cut(s) 22, 786, 1860, 2696, 2949
BseNI ACTGG 5 cut(s) 519, 609, 1541, 1944, 2246
BsePI GCGCGC 1 cut(s) 707
BseRI GAGGAG 2 cut(s) 1317, 2835
BseSI GKGCMC 2 cut(s) 233, 1573
BsgI GTGCAG 2 cut(s) 2171, 2325
Bsh1236I CGCG 3 cut(s) 89, 114, 709
BshNI GGYRCC 2 cut(s) 230, 854
BshTI ACCGGT 1 cut(s) 1839
BsiHKAI GWGCWC 3 cut(s) 126, 462, 2373
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 8 cut(s) 141, 192, 204, 267, 312, 1472, 1681, 1840
BslFI GGGAC 6 cut(s) 539, 728, 1003, 1956, 2956, 3007
BslI CCNNNNNNNGG 8 cut(s) 167, 355, 1522, 1826, 1939, 2443, 2685, 2866
BsmAI GTCTC 2 cut(s) 346, 2918
BsmBI CGTCTC 1 cut(s) 346
BsmFI GGGAC 6 cut(s) 539, 728, 1003, 1956, 2956, 3007
Bso31I GGTCTC 1 cut(s) 2918
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 6 cut(s) 126, 233, 312, 462, 1573, 2373
Bsp13I TCCGGA 1 cut(s) 1471
Bsp1407I TGTACA 1 cut(s) 1563
BspCNI CTCAG 5 cut(s) 21, 787, 1861, 2697, 2950
BspEI TCCGGA 1 cut(s) 1471
BspFNI CGCG 3 cut(s) 89, 114, 709
BspHI TCATGA 1 cut(s) 2230
BspLI GGNNCC 9 cut(s) 232, 309, 856, 1299, 2880, 2906, 2966, 2995, 3022
BspMAI CTGCAG 3 cut(s) 402, 1003, 2544
BspMI ACCTGC 1 cut(s) 2547
BspPI GGATC 6 cut(s) 1238, 1292, 1305, 1418, 1524, 1639
BspT107I GGYRCC 2 cut(s) 230, 854
BspTNI GGTCTC 1 cut(s) 2918
BsrDI GCAATG 6 cut(s) 421, 2496, 2518, 2679, 2697, 2727
BsrFI RCCGGY 3 cut(s) 140, 203, 1839
BsrGI TGTACA 1 cut(s) 1563
BsrI ACTGG 5 cut(s) 519, 609, 1541, 1944, 2246
BssAI RCCGGY 3 cut(s) 140, 203, 1839
BssHII GCGCGC 1 cut(s) 707
BssNI GRCGYC 1 cut(s) 1205
BssSI CACGAG 2 cut(s) 1434, 2301
BssT1I CCWWGG 3 cut(s) 1122, 1808, 2968
Bst2BI CACGAG 2 cut(s) 1434, 2301
Bst2UI CCWGG 8 cut(s) 227, 235, 284, 736, 1397, 1803, 2883, 3042
Bst4CI ACNGT 2 cut(s) 1252, 1960
Bst6I CTCTTC 2 cut(s) 2172, 2916
BstACI GRCGYC 1 cut(s) 1205
BstAPI GCANNNNNTGC 1 cut(s) 397
BstAUI TGTACA 1 cut(s) 1563
BstC8I GCNNGC 9 cut(s) 126, 142, 205, 240, 446, 709, 2004, 2373, 3075
BstDSI CCRYGG 1 cut(s) 322
BstEII GGTNACC 2 cut(s) 2534, 2632
BstENI CCTNNNNNAGG 1 cut(s) 353
BstFNI CGCG 3 cut(s) 89, 114, 709
BstH2I RGCGCY 2 cut(s) 8, 1311
BstHHI GCGC 7 cut(s) 7, 91, 116, 709, 711, 1310, 3079
BstMAI GTCTC 2 cut(s) 346, 2918
BstNI CCWGG 8 cut(s) 227, 235, 284, 736, 1397, 1803, 2883, 3042
BstNSI RCATGY 3 cut(s) 620, 1168, 2006
BstPI GGTNACC 2 cut(s) 2534, 2632
BstSFI CTRYAG 5 cut(s) 398, 834, 999, 1086, 2540
BstSLI GKGCMC 2 cut(s) 233, 1573
BstUI CGCG 3 cut(s) 89, 114, 709
BstV2I GAAGAC 2 cut(s) 1775, 2003
BstX2I RGATCY 5 cut(s) 1198, 1297, 1529, 1631, 2554
BstXI CCANNNNNNTGG 1 cut(s) 956
BstYI RGATCY 5 cut(s) 1198, 1297, 1529, 1631, 2554
Bsu36I CCTNAGG 1 cut(s) 795
BsuI GTATCC 1 cut(s) 808
BtgI CCRYGG 1 cut(s) 322
BtgZI GCGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 3 cut(s) 395, 616, 1956
BveI ACCTGC 1 cut(s) 2547
Cac8I GCNNGC 9 cut(s) 126, 142, 205, 240, 446, 709, 2004, 2373, 3075
CaiI CAGNNNCTG 1 cut(s) 1868
CciI TCATGA 1 cut(s) 2230
CfoI GCGC 7 cut(s) 7, 91, 116, 709, 711, 1310, 3079
Cfr10I RCCGGY 3 cut(s) 140, 203, 1839
CseI GACGC 4 cut(s) 120, 163, 1213, 2008
Csp6I GTAC 4 cut(s) 672, 943, 1564, 2409
CspAI ACCGGT 1 cut(s) 1839
CviQI GTAC 4 cut(s) 672, 943, 1564, 2409
DriI GACNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 2 cut(s) 748, 1905
Eam1104I CTCTTC 2 cut(s) 2172, 2916
Eam1105I GACNNNNNGTC 1 cut(s) 116
EarI CTCTTC 2 cut(s) 2172, 2916
EciI GGCGGA 4 cut(s) 127, 325, 334, 2891
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 3 cut(s) 1122, 1808, 2968
Eco147I AGGCCT 1 cut(s) 1695
Eco24I GRGCYC 2 cut(s) 126, 312
Eco31I GGTCTC 1 cut(s) 2918
Eco32I GATATC 1 cut(s) 962
Eco47I GGWCC 7 cut(s) 247, 469, 1157, 1873, 1919, 2905, 2994
Eco53kI GAGCTC 1 cut(s) 124
Eco57I CTGAAG 2 cut(s) 2564, 2652
Eco81I CCTNAGG 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 549
Eco91I GGTNACC 2 cut(s) 2534, 2632
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoO109I RGGNCCY 2 cut(s) 247, 469
EcoO65I GGTNACC 2 cut(s) 2534, 2632
EcoRI GAATTC 1 cut(s) 1606
EcoRII CCWGG 8 cut(s) 225, 233, 282, 734, 1395, 1801, 2881, 3040
EcoRV GATATC 1 cut(s) 962
EcoT14I CCWWGG 3 cut(s) 1122, 1808, 2968
EcoT22I ATGCAT 1 cut(s) 622
EcoT38I GRGCYC 2 cut(s) 126, 312
ErhI CCWWGG 3 cut(s) 1122, 1808, 2968
Esp3I CGTCTC 1 cut(s) 346
FalI AAGNNNNNCTT 4 cut(s) 792, 824, 2650, 2682
FaqI GGGAC 6 cut(s) 539, 728, 1003, 1956, 2956, 3007
FauI CCCGC 4 cut(s) 247, 287, 353, 660
FauNDI CATATG 2 cut(s) 753, 1234
FbaI TGATCA 2 cut(s) 2239, 2473
FriOI GRGCYC 2 cut(s) 126, 312
FspBI CTAG 5 cut(s) 645, 2079, 2558, 2639, 2798
GlaI GCGC 7 cut(s) 6, 90, 115, 708, 710, 1309, 3078
GsuI CTGGAG 1 cut(s) 1038
HaeII RGCGCY 2 cut(s) 8, 1311
HapII CCGG 8 cut(s) 141, 192, 204, 267, 312, 1472, 1681, 1840
HgaI GACGC 4 cut(s) 120, 163, 1213, 2008
HhaI GCGC 7 cut(s) 7, 91, 116, 709, 711, 1310, 3079
Hin1I GRCGYC 1 cut(s) 1205
Hin6I GCGC 7 cut(s) 5, 89, 114, 707, 709, 1308, 3077
HinP1I GCGC 7 cut(s) 5, 89, 114, 707, 709, 1308, 3077
HincII GTYRAC 2 cut(s) 1623, 2287
HindII GTYRAC 2 cut(s) 1623, 2287
HindIII AAGCTT 2 cut(s) 1647, 1814
HinfI GANTC 7 cut(s) 552, 1265, 1272, 2188, 2381, 2452, 2585
HpaI GTTAAC 1 cut(s) 2287
HpaII CCGG 8 cut(s) 141, 192, 204, 267, 312, 1472, 1681, 1840
Hpy166II GTNNAC 5 cut(s) 614, 1094, 1623, 1880, 2287
Hpy8I GTNNAC 5 cut(s) 614, 1094, 1623, 1880, 2287
Hpy99I CGWCG 3 cut(s) 114, 122, 260
HpyAV CCTTC 6 cut(s) 30, 63, 198, 568, 855, 1685
HpyCH4III ACNGT 2 cut(s) 1252, 1960
Hsp92I GRCGYC 1 cut(s) 1205
HspAI GCGC 7 cut(s) 5, 89, 114, 707, 709, 1308, 3077
Kpn2I TCCGGA 1 cut(s) 1471
KroI GCCGGC 2 cut(s) 140, 203
KroNI GCCGGC 2 cut(s) 142, 205
Ksp22I TGATCA 2 cut(s) 2239, 2473
KspAI GTTAAC 1 cut(s) 2287
LmnI GCTCC 6 cut(s) 96, 307, 529, 1054, 1081, 3101
LweI GCATC 8 cut(s) 400, 412, 629, 670, 893, 1332, 1710, 2171
MaeI CTAG 5 cut(s) 645, 2079, 2558, 2639, 2798
MaeIII GTNAC 5 cut(s) 841, 1252, 2394, 2534, 2632
MflI RGATCY 5 cut(s) 1198, 1297, 1529, 1631, 2554
MhlI GDGCHC 6 cut(s) 126, 233, 312, 462, 1573, 2373
MlsI TGGCCA 2 cut(s) 750, 1907
MluNI TGGCCA 2 cut(s) 750, 1907
MlyI GAGTC 2 cut(s) 561, 2594
MmeI TCCRAC 5 cut(s) 133, 1135, 1271, 1557, 2106
Mox20I TGGCCA 2 cut(s) 750, 1907
Mph1103I ATGCAT 1 cut(s) 622
MreI CGCCGGCG 1 cut(s) 203
MroI TCCGGA 1 cut(s) 1471
MroNI GCCGGC 2 cut(s) 140, 203
MscI TGGCCA 2 cut(s) 750, 1907
MseI TTAA 9 cut(s) 530, 920, 1130, 1338, 2286, 2363, 2790, 2855, 3027
MslI CAYNNNNRTG 4 cut(s) 63, 744, 954, 1576
Msp20I TGGCCA 2 cut(s) 750, 1907
MspA1I CMGCKG 1 cut(s) 2525
MspI CCGG 8 cut(s) 141, 192, 204, 267, 312, 1472, 1681, 1840
MvaI CCWGG 8 cut(s) 227, 235, 284, 736, 1397, 1803, 2883, 3042
MvnI CGCG 3 cut(s) 89, 114, 709
NaeI GCCGGC 2 cut(s) 142, 205
NciI CCSGG 2 cut(s) 312, 1682
NdeI CATATG 2 cut(s) 753, 1234
NgoMIV GCCGGC 2 cut(s) 140, 203
NlaIV GGNNCC 9 cut(s) 232, 309, 856, 1299, 2880, 2906, 2966, 2995, 3022
NmeAIII GCCGAG 2 cut(s) 268, 2764
NmuCI GTSAC 5 cut(s) 841, 1252, 2394, 2534, 2632
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 3 cut(s) 620, 1168, 2006
PaeI GCATGC 1 cut(s) 2006
PaeR7I CTCGAG 1 cut(s) 549
PagI TCATGA 1 cut(s) 2230
PaqCI CACCTGC 1 cut(s) 2547
PasI CCCWGGG 2 cut(s) 226, 1802
PauI GCGCGC 1 cut(s) 707
PceI AGGCCT 1 cut(s) 1695
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdiI GCCGGC 2 cut(s) 142, 205
PfeI GAWTC 5 cut(s) 1265, 1272, 2188, 2381, 2452
PflMI CCANNNNNTGG 1 cut(s) 2685
PinAI ACCGGT 1 cut(s) 1839
PleI GAGTC 2 cut(s) 560, 2593
PpsI GAGTC 2 cut(s) 560, 2593
PpuMI RGGWCCY 2 cut(s) 247, 469
PsiI TTATAA 2 cut(s) 2088, 2819
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 2 cut(s) 247, 469
Psp6I CCWGG 8 cut(s) 225, 233, 282, 734, 1395, 1801, 2881, 3040
PspEI GGTNACC 2 cut(s) 2534, 2632
PspGI CCWGG 8 cut(s) 225, 233, 282, 734, 1395, 1801, 2881, 3040
PspN4I GGNNCC 9 cut(s) 232, 309, 856, 1299, 2880, 2906, 2966, 2995, 3022
PspPPI RGGWCCY 2 cut(s) 247, 469
PstI CTGCAG 3 cut(s) 402, 1003, 2544
PstNI CAGNNNCTG 1 cut(s) 1868
PsuI RGATCY 5 cut(s) 1198, 1297, 1529, 1631, 2554
PteI GCGCGC 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 2525
RsaI GTAC 4 cut(s) 673, 944, 1565, 2410
RsaNI GTAC 4 cut(s) 672, 943, 1564, 2409
RseI CAYNNNNRTG 4 cut(s) 63, 744, 954, 1576
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 9 cut(s) 530, 920, 1130, 1338, 2286, 2363, 2790, 2855, 3027
SbfI CCTGCAGG 1 cut(s) 2544
ScaI AGTACT 1 cut(s) 944
SchI GAGTC 2 cut(s) 561, 2594
SdaI CCTGCAGG 1 cut(s) 2544
SduI GDGCHC 6 cut(s) 126, 233, 312, 462, 1573, 2373
SfaNI GCATC 8 cut(s) 400, 412, 629, 670, 893, 1332, 1710, 2171
SfcI CTRYAG 5 cut(s) 398, 834, 999, 1086, 2540
Sfr274I CTCGAG 1 cut(s) 549
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 7 cut(s) 247, 469, 1157, 1873, 1919, 2905, 2994
SlaI CTCGAG 1 cut(s) 549
SmiMI CAYNNNNRTG 4 cut(s) 63, 744, 954, 1576
SmlI CTYRAG 2 cut(s) 549, 569
SmoI CTYRAG 2 cut(s) 549, 569
SphI GCATGC 1 cut(s) 2006
Sse8387I CCTGCAGG 1 cut(s) 2544
SseBI AGGCCT 1 cut(s) 1695
SspMI CTAG 5 cut(s) 645, 2079, 2558, 2639, 2798
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 1695
StyI CCWWGG 3 cut(s) 1122, 1808, 2968
TaaI ACNGT 2 cut(s) 1252, 1960
TaqI TCGA 6 cut(s) 120, 258, 489, 550, 652, 2989
TaqII GACCGA 1 cut(s) 2620
TatI WGTACW 2 cut(s) 942, 1563
TauI GCSGC 2 cut(s) 266, 1007
TfiI GAWTC 5 cut(s) 1265, 1272, 2188, 2381, 2452
Tru1I TTAA 9 cut(s) 530, 920, 1130, 1338, 2286, 2363, 2790, 2855, 3027
Tru9I TTAA 9 cut(s) 530, 920, 1130, 1338, 2286, 2363, 2790, 2855, 3027
TscAI CASTG 3 cut(s) 402, 616, 1963
TseFI GTSAC 5 cut(s) 841, 1252, 2394, 2534, 2632
Tsp45I GTSAC 5 cut(s) 841, 1252, 2394, 2534, 2632
TspGWI ACGGA 2 cut(s) 516, 1865
TspRI CASTG 3 cut(s) 402, 616, 1963
Van91I CCANNNNNTGG 1 cut(s) 2685
VpaK11BI GGWCC 7 cut(s) 247, 469, 1157, 1873, 1919, 2905, 2994
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 5 cut(s) 875, 1318, 1606, 2339, 2772
XbaI TCTAGA 1 cut(s) 644
XceI RCATGY 3 cut(s) 620, 1168, 2006
XcmI CCANNNNNNNNNTGG 1 cut(s) 934
XhoI CTCGAG 1 cut(s) 549
XspI CTAG 5 cut(s) 645, 2079, 2558, 2639, 2798
ZrmI AGTACT 1 cut(s) 944
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.