Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003436

Physical Location & Seq

Genomic Coordinates Forward (+)

429895 .. 431814

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0005400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAAGTTGGGCTCGTTACAGCTTCAGTTTCAGAGAGGGATTTTGAGGTGAAGGTAGGGAACAATCTTGGAGTAGAGAAAAAAGATGAAGTTGGAAGGAAATGTGTAAAAGGATCTCAACCTGGTCCTGTTCTAACTTGGGCACAACGTGTTAAAATTGCAGTGGGTGCTGCAAGAGGACTCAAGTATTTACATGAAAAGACGGACCCCCATATCATTCATCATGCTATCAAGTCCAGCAATGTACTAATATTTGATGATGATGTTGCTAAGATTGCAGACTTCGATTTATCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Cyclin_C_2 Cyclin_N

Protein Analysis

99

Amino Acids

10.81

Weight (kDa)

6.9

Isoelectric Point (pI)

8.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	43 - 98	6.6e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	48 - 98	4.6e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27620 AT5G27620 AT5G27620
fragaria_vesca	FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200
malus_domestica	MD04G1203400.v1.1 MD04G1203500.v1.1 MD12G1217300.v1.1
prunus_persica	Prupe.2G191000_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1
pyrus_communis	pycom04g17990 pycom12g20280
rosa_chinensis	RchiOBHm_Chr3g0455221 RchiOBHm_Chr7g0227161
rosa_laevigata	RLG00000001663 RLG00000025376
rosa_multiflora	Rmu_sc0002169.1_g000032
rosa_roxburghii	Rroxscaffold_3G00232260 Rroxscaffold_6G00424460
rosa_rugosa	Rorug03G0005100.1 Rorug03G0005200 Rorug03G0005300 Rorug03G0005400 Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh3AG065300 Rh3BG067500 Rh3CG065900 Rh3DG067500 Rh7BG376000
rosa_wichuraiana	Rw3G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
AlwI	GGATC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	125, 205
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	125, 205
BaeGI	GKGCMC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	123
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	2 cut(s)	125, 205
BmgT120I	GGNCC	2 cut(s)	125, 205
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	15, 145
Bsp143I	GATC	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	247
BssMI	GATC	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 275
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	125, 205
CsiI	ACCWGGT	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	2 cut(s)	194, 224
CviJI	RGCY	2 cut(s)	13, 23
CviKI_1	RGCY	2 cut(s)	13, 23
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	115
DpnII	GATC	1 cut(s)	113
DraIII	CACNNNGTG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	125, 205
Eco57I	CTGAAG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	2 cut(s)	197, 227
FaiI	YATR	3 cut(s)	195, 213, 225
FatI	CATG	2 cut(s)	193, 223
Fnu4HI	GCNGC	1 cut(s)	171
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	197, 227
HinfI	GANTC	1 cut(s)	180
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	46, 90
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	161, 173, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 275
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	197, 227
Kzo9I	GATC	1 cut(s)	113
LpnPI	CCDG	4 cut(s)	108, 135, 141, 250
Lsp1109I	GCAGC	1 cut(s)	157
MabI	ACCWGGT	1 cut(s)	121
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	115
MboI	GATC	1 cut(s)	113
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	15, 145
MluCI	AATT	2 cut(s)	156, 295
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	30, 40, 170
MseI	TTAA	2 cut(s)	153, 298
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	167, 275
NdeII	GATC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	197, 227
NlaIV	GGNNCC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	125, 205
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	153, 298
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	113
Sau96I	GGNCC	2 cut(s)	125, 205
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	15, 145
SetI	ASST	5 cut(s)	25, 51, 57, 124, 151
SexAI	ACCWGGT	1 cut(s)	121
SinI	GGWCC	2 cut(s)	125, 205
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	156, 295
SspI	AATATT	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	121
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	156, 295
TatI	WGTACW	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	153, 298
Tru9I	TTAA	2 cut(s)	153, 298
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	3 cut(s)	102, 209, 210
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	125, 205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.