Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003436

Physical Location & Seq

Genomic Coordinates Reverse (-)

23044961 .. 23046255

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G191000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAAGTGGATAAAATCATGCTCACAGATGCACCACTTCTATTCCCTCCTGAGCAGTTGGCATTGGCTGCTTTGCGTAGTGCAAATCAGGTGCACAAAGTTGTTGACTTTGAGAGATATCTGAGGAGCACTCCCTCTCGTCAGAGTTCTGAACATACCGTTTCAGAGCTAGTTGAATTACTTAATGCAATAGATTCTTGGGCAAGAAAATACAAGTTTCCTTCAGACAAGGATCTCAAGCACATCAACCGAAAACTGAAATCTTGTTGGGGTCTTAGTTCACATGACGAAAGTACGAAGTGGGATAAGAAATCGAAGCACAAGTCGAAGAGGAGCTCAAATGAAATGCAACCTGTACCTTCTCATACTGAAATCTCTCTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Cyclin_C_2 Cyclin_N

Protein Analysis

129

Amino Acids

14.74

Weight (kDa)

9.24

Isoelectric Point (pI)

62.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27620 AT5G27620 AT5G27620
fragaria_vesca	FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200
malus_domestica	MD04G1203400.v1.1 MD04G1203500.v1.1 MD12G1217300.v1.1
prunus_persica	Prupe.2G191000_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1
pyrus_communis	pycom04g17990 pycom12g20280
rosa_chinensis	RchiOBHm_Chr3g0455221 RchiOBHm_Chr7g0227161
rosa_laevigata	RLG00000001663 RLG00000025376
rosa_multiflora	Rmu_sc0002169.1_g000032
rosa_roxburghii	Rroxscaffold_3G00232260 Rroxscaffold_6G00424460
rosa_rugosa	Rorug03G0005100.1 Rorug03G0005200 Rorug03G0005300 Rorug03G0005400 Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh3AG065300 Rh3BG067500 Rh3CG065900 Rh3DG067500 Rh7BG376000
rosa_wichuraiana	Rw3G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	2 cut(s)	295, 357
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	2 cut(s)	169, 336
AluI	AGCT	2 cut(s)	169, 336
Alw21I	GWGCWC	3 cut(s)	96, 131, 338
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	240
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	68
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
BaeGI	GKGCMC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	3 cut(s)	96, 131, 338
BbvI	GCAGC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
BmsI	GCATC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	42, 113
BseRI	GAGGAG	2 cut(s)	139, 346
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	55
BsiHKAI	GWGCWC	3 cut(s)	96, 131, 338
Bsp1286I	GDGCHC	3 cut(s)	96, 131, 338
Bsp143I	GATC	1 cut(s)	232
BspCNI	CTCAG	2 cut(s)	43, 114
BspPI	GGATC	1 cut(s)	240
BssMI	GATC	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstDEI	CTNAG	3 cut(s)	51, 122, 275
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	294, 356
CviAII	CATG	2 cut(s)	19, 284
CviJI	RGCY	3 cut(s)	68, 169, 336
CviKI_1	RGCY	3 cut(s)	68, 169, 336
CviQI	GTAC	2 cut(s)	294, 356
DdeI	CTNAG	3 cut(s)	51, 122, 275
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	336
EcoRV	GATATC	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	2 cut(s)	22, 287
FaiI	YATR	4 cut(s)	20, 156, 285, 366
FatI	CATG	2 cut(s)	18, 283
Fnu4HI	GCNGC	1 cut(s)	69
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	22, 287
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	94, 106, 281
Hpy188I	TCNGA	5 cut(s)	123, 144, 151, 166, 226
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	3 cut(s)	94, 106, 281
HpyAV	CCTTC	2 cut(s)	231, 369
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	5 cut(s)	32, 83, 94, 188, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	51, 122, 275
Hsp92II	CATG	2 cut(s)	22, 287
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	126, 333
LpnPI	CCDG	3 cut(s)	63, 74, 366
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	170
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	96, 131, 338
MluCI	AATT	1 cut(s)	176
MnlI	CCTC	4 cut(s)	57, 117, 145, 324
MseI	TTAA	2 cut(s)	183, 385
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	22, 287
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	295, 357
RsaNI	GTAC	2 cut(s)	294, 356
SacI	GAGCTC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	183, 385
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	232
SduI	GDGCHC	3 cut(s)	96, 131, 338
SetI	ASST	5 cut(s)	93, 171, 338, 355, 361
SfaNI	GCATC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	176
SspMI	CTAG	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	314, 326
TasI	AATT	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	183, 385
Tru9I	TTAA	2 cut(s)	183, 385
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	357
VneI	GTGCAC	1 cut(s)	92
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.