RchiOBHm_Chr7g0227161

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003436
Physical Location & Seq
Reverse (-)
50505025 .. 50505369
345 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20344

Sequence Viewer

Length: 345 bp
ATGGTTTATCAGAGTTTGGAATTTGATCTTATTGTGTATGCACCATATCGCTCCGTTGAAGGGATTATCCAAGATATGGAGGAATCCAGCTGCGGATTTAATGATGATGATCAGGTTCAAAAGCTAAAGCACAGTGCACTTATGGAAGTTGACATGATCATGCTCACAGATGCGCCACTTCTGTTGCCTCCTGGACAGTTGGCCTTGGCGGCATTGCGAAGAGGAACACAGGTGCACCGAGTTGTGGACTTTGACAGATACCTAGCATGCTCTCTCGTCACGGTTCTGCTGCGCATACCATTTCAGAGCTGGTTGAATGCCTTGATGCAATTGATTCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 ko04110 map03022 map03420 map04110
Pfam Domains
Protein Families
Cyclin_C_2 Cyclin_N

Protein Analysis

114

Amino Acids

12.93

Weight (kDa)

4.61

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C_2 PF16899 15 - 92 2e-08 Cyclin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 76
AciI CCGC 2 cut(s) 93, 209
AcsI RAATTY 1 cut(s) 20
AfiI CCNNNNNNNGG 3 cut(s) 60, 76, 244
AgsI TTSAA 3 cut(s) 59, 119, 316
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 3 cut(s) 90, 124, 309
AluI AGCT 3 cut(s) 90, 124, 309
Alw21I GWGCWC 2 cut(s) 139, 237
Alw44I GTGCAC 2 cut(s) 135, 233
AoxI GGCC 1 cut(s) 201
ApaLI GTGCAC 2 cut(s) 135, 233
ApeKI GCWGC 2 cut(s) 90, 289
ApoI RAATTY 1 cut(s) 20
AspLEI GCGC 2 cut(s) 175, 294
BaeGI GKGCMC 2 cut(s) 139, 237
Bbv12I GWGCWC 2 cut(s) 139, 237
BbvI GCAGC 2 cut(s) 77, 276
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 2 cut(s) 109, 156
BfaI CTAG 1 cut(s) 263
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 3 cut(s) 91, 210, 290
BlsI GCNGC 3 cut(s) 92, 211, 291
Bme1390I CCNGG 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 2 cut(s) 160, 315
BsaBI GATNNNNATC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 76, 244
Bse3DI GCAATG 1 cut(s) 212
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 3 cut(s) 60, 76, 244
BseMI GCAATG 1 cut(s) 212
BseSI GKGCMC 2 cut(s) 139, 237
BseXI GCAGC 2 cut(s) 77, 276
BshFI GGCC 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 139, 237
BslI CCNNNNNNNGG 3 cut(s) 60, 76, 244
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 139, 237
Bsp143I GATC 3 cut(s) 25, 109, 156
BspACI CCGC 2 cut(s) 93, 209
BspANI GGCC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 3 cut(s) 25, 109, 156
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 134, 198, 283
Bst6I CTCTTC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 268
BstHHI GCGC 2 cut(s) 175, 294
BstKTI GATC 3 cut(s) 28, 112, 159
BstMBI GATC 3 cut(s) 25, 109, 156
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 2 cut(s) 139, 237
BstV1I GCAGC 2 cut(s) 77, 276
BsuRI GGCC 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 2 cut(s) 175, 294
CspCI CAANNNNNGTGG 2 cut(s) 165, 200
CviAII CATG 3 cut(s) 154, 160, 267
CviJI RGCY 4 cut(s) 90, 124, 203, 309
CviKI_1 RGCY 4 cut(s) 90, 124, 203, 309
DpnI GATC 3 cut(s) 27, 111, 158
DpnII GATC 3 cut(s) 25, 109, 156
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 157, 163, 270
FaiI YATR 8 cut(s) 39, 46, 77, 143, 155, 161, 268, 296
FatI CATG 3 cut(s) 153, 159, 266
FbaI TGATCA 2 cut(s) 109, 156
Fnu4HI GCNGC 3 cut(s) 91, 210, 290
Fsp4HI GCNGC 3 cut(s) 91, 210, 290
FspBI CTAG 1 cut(s) 263
FspI TGCGCA 1 cut(s) 293
GlaI GCGC 2 cut(s) 174, 293
GluI GCNGC 3 cut(s) 91, 210, 290
HaeIII GGCC 1 cut(s) 203
HhaI GCGC 2 cut(s) 175, 294
Hin1II CATG 3 cut(s) 157, 163, 270
Hin6I GCGC 2 cut(s) 173, 292
HinP1I GCGC 2 cut(s) 173, 292
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 2 cut(s) 83, 334
Hpy166II GTNNAC 4 cut(s) 137, 151, 235, 247
Hpy188I TCNGA 2 cut(s) 12, 306
Hpy8I GTNNAC 4 cut(s) 137, 151, 235, 247
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 3 cut(s) 134, 198, 283
HpyCH4V TGCA 4 cut(s) 41, 137, 235, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
Hsp92II CATG 3 cut(s) 157, 163, 270
HspAI GCGC 2 cut(s) 173, 292
Ksp22I TGATCA 2 cut(s) 109, 156
Kzo9I GATC 3 cut(s) 25, 109, 156
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 6 cut(s) 98, 100, 177, 204, 215, 295
Lsp1109I GCAGC 2 cut(s) 77, 276
LweI GCATC 2 cut(s) 160, 315
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 277
MalI GATC 3 cut(s) 27, 111, 158
MboI GATC 3 cut(s) 25, 109, 156
MboII GAAGA 1 cut(s) 231
MfeI CAATTG 1 cut(s) 329
MhlI GDGCHC 2 cut(s) 139, 237
MluCI AATT 2 cut(s) 20, 329
MnlI CCTC 3 cut(s) 73, 198, 215
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 192
MunI CAATTG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 3 cut(s) 25, 109, 156
NlaIII CATG 3 cut(s) 157, 163, 270
NmuCI GTSAC 1 cut(s) 277
NsbI TGCGCA 1 cut(s) 293
NspI RCATGY 1 cut(s) 270
PaeI GCATGC 1 cut(s) 270
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 2 cut(s) 83, 334
PflMI CCANNNNNTGG 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 190
PkrI GCNGC 3 cut(s) 92, 211, 291
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 90
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 3 cut(s) 91, 210, 290
Sau3AI GATC 3 cut(s) 25, 109, 156
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 2 cut(s) 139, 237
SetI ASST 6 cut(s) 92, 117, 126, 234, 264, 311
SfaNI GCATC 2 cut(s) 160, 315
SmiMI CAYNNNNRTG 1 cut(s) 158
SphI GCATGC 1 cut(s) 270
Sse9I AATT 2 cut(s) 20, 329
SsiI CCGC 2 cut(s) 93, 209
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 134, 198, 283
TasI AATT 2 cut(s) 20, 329
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 2 cut(s) 83, 334
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 90, 289
Tsp45I GTSAC 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 76
VneI GTGCAC 2 cut(s) 135, 233
XapI RAATTY 1 cut(s) 20
XceI RCATGY 1 cut(s) 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.