Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003436

Physical Location & Seq

Genomic Coordinates Reverse (-)

28962608 .. 28963235

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1203500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGCCGATTTCCAGAGCTCGACTCACCGAGCCAGGTGGATCTTCACTCCCGAAGAACTGGCTGGTAAATACAAGGCTGCTAATCAAAGAGCAATGCAAGCATTGGAGAAGGTACGTATGGAGTCTTGCTTTCGTTGGGAGTGTGTTTATAGACCGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Cyclin_C_2 Cyclin_N

Protein Analysis

54

Amino Acids

6.33

Weight (kDa)

9.23

Isoelectric Point (pI)

65.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27620 AT5G27620 AT5G27620
fragaria_vesca	FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200
malus_domestica	MD04G1203400.v1.1 MD04G1203500.v1.1 MD12G1217300.v1.1
prunus_persica	Prupe.2G191000_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1
pyrus_communis	pycom04g17990 pycom12g20280
rosa_chinensis	RchiOBHm_Chr3g0455221 RchiOBHm_Chr7g0227161
rosa_laevigata	RLG00000001663 RLG00000025376
rosa_multiflora	Rmu_sc0002169.1_g000032
rosa_roxburghii	Rroxscaffold_3G00232260 Rroxscaffold_6G00424460
rosa_rugosa	Rorug03G0005100.1 Rorug03G0005200 Rorug03G0005300 Rorug03G0005400 Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh3AG065300 Rh3BG067500 Rh3CG065900 Rh3DG067500 Rh7BG376000
rosa_wichuraiana	Rw3G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	114
AgeI	ACCGGT	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	77
AsiGI	ACCGGT	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	34
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BsaAI	YACGTR	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	155
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	63
BssAI	RCCGGY	1 cut(s)	154
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstSNI	TACGTA	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	113
CspAI	ACCGGT	1 cut(s)	154
CviJI	RGCY	5 cut(s)	5, 18, 32, 62, 77
CviKI_1	RGCY	5 cut(s)	5, 18, 32, 62, 77
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	18
Eco105I	TACGTA	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	20
FaiI	YATR	3 cut(s)	119, 150, 160
Fnu4HI	GCNGC	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	155
HinfI	GANTC	2 cut(s)	22, 122
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	17
Hpy188III	TCNNGA	2 cut(s)	13, 50
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	19, 26, 44, 46, 48
Lsp1109I	GCAGC	1 cut(s)	64
MaeII	ACGT	1 cut(s)	115
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	2 cut(s)	34, 65
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	20
MlyI	GAGTC	2 cut(s)	16, 131
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	39
PinAI	ACCGGT	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	16, 130
PpsI	GAGTC	2 cut(s)	16, 130
Ppu21I	YACGTR	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	20
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	16, 131
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	4 cut(s)	20, 38, 114, 118
SnaBI	TACGTA	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	32
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	20
TseI	GCWGC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.