Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003436

Physical Location & Seq

Genomic Coordinates Reverse (-)

29471210 .. 29474742

Gene Structure 3533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1217300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCCGATTTCCAGAGCTCGACTCACCGAGCCAGGTGGATCTTCACTCCCGAAGAACTGGTTGGTAAATACAAGGCTGCTAATCAAAGAGCAGTGCAAACATTGGAGAAGTATGGAGCAACACTAATGGAAGTAGATGTAGATGGAACATTATCATACCCTAAACCCCAAGTAAATGCTGATTCCCGTCCAAAACCCATTAACATTGAAGAGGAGCAATTTATGCGAGTATTTTATGAGAATAAACTTCAAGAAGTGTGTACCAACTTTCATTTTCCGCATAAAGTTCAGGCAACGGCTCTCATATATTTCAAGAGGTTTTATCTACACTGGTCGGTGATGCTACATCATCCAAAAAATATAATGTTAACCTGTATATATGCAGCTTGTAAAATAGAGGAAAACCACGTATCAGCGGAGGAGCTTGGTAAGGGGATCTCACAGGATCATCAAATGATACTCAATAATGAGATGATAGTTTATCAGACTTTGGAATTTGATCTTATCGTTTATGCACCGTACCGCTCAATTGAAGGATTTGTCAATGATATGGAGGAATTCTGCGGATTAGAGGATAACCAGCTCCAACATCTCAAGGATGCGGCAAAGATGGAAGTTGATAAAATCATGCTCACAGATGCACCACTCCTTTTCCCTCCGGGGCAGTTGGCATTGGCTGCATTGCGTAGTGCAAATCATGTATGCAGAGTCGCTGACTTTGAGAGATACCTGAGTAGCATTCTCTCTCGGCAGAGTTCTGCGCATACCATTTCAGAGCTAGTCGAATTCCTCAATGCAATCGATTCTTGGGCAAAAAGATACAAGTTTCCTTCAGACAAGGATCTCAAGCACATCAACCGGAAACTGAAATCTTGTTGGGGACTTAGTACACATGACGAGAGCAAGAAGCGGGATAAGAAATCAAAGCACAAGTCAAAGAGGAGTTCAAATGAAGCACAAATTCTACCATCTCGTGCTCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Cyclin_C_2 Cyclin_N

Protein Analysis

329

Amino Acids

37.95

Weight (kDa)

7.68

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	72 - 168	1.4e-11	Cyclin, N-terminal domain
TFIIB	PF00382	81 - 142	2.1e-06	Transcription factor TFIIB repeat
Cyclin_C_2	PF16899	173 - 268	3.7e-14	Cyclin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27620 AT5G27620 AT5G27620
fragaria_vesca	FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200
malus_domestica	MD04G1203400.v1.1 MD04G1203500.v1.1 MD12G1217300.v1.1
prunus_persica	Prupe.2G191000_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1
pyrus_communis	pycom04g17990 pycom12g20280
rosa_chinensis	RchiOBHm_Chr3g0455221 RchiOBHm_Chr7g0227161
rosa_laevigata	RLG00000001663 RLG00000025376
rosa_multiflora	Rmu_sc0002169.1_g000032
rosa_roxburghii	Rroxscaffold_3G00232260 Rroxscaffold_6G00424460
rosa_rugosa	Rorug03G0005100.1 Rorug03G0005200 Rorug03G0005300 Rorug03G0005400 Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh3AG065300 Rh3BG067500 Rh3CG065900 Rh3DG067500 Rh7BG376000
rosa_wichuraiana	Rw3G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	762
AccBSI	CCGCTC	1 cut(s)	525
AciI	CCGC	6 cut(s)	278, 416, 523, 564, 602, 910
AclWI	GGATC	4 cut(s)	47, 443, 453, 849
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	494, 557, 785, 960
AcuI	CTGAAG	1 cut(s)	816
AfaI	GTAC	3 cut(s)	262, 521, 889
AgsI	TTSAA	5 cut(s)	209, 251, 313, 533, 948
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	5 cut(s)	18, 386, 424, 583, 778
AluI	AGCT	5 cut(s)	18, 386, 424, 583, 778
Alw21I	GWGCWC	2 cut(s)	20, 979
AlwI	GGATC	4 cut(s)	47, 443, 453, 849
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	77, 383, 677
ApoI	RAATTY	4 cut(s)	494, 557, 785, 960
ArsI	GACNNNNNNTTYG	2 cut(s)	917, 949
AspLEI	GCGC	1 cut(s)	763
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	2 cut(s)	17, 349
BaeI	ACNNNNGTAYC	2 cut(s)	718, 751
BanII	GRGCYC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	972
Bbv12I	GWGCWC	2 cut(s)	20, 979
BbvI	GCAGC	3 cut(s)	64, 395, 664
BccI	CCATC	3 cut(s)	137, 604, 976
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	660
BfaI	CTAG	1 cut(s)	779
BisI	GCNGC	4 cut(s)	78, 384, 603, 678
BlsI	GCNGC	4 cut(s)	79, 385, 604, 679
Bme1390I	CCNGG	2 cut(s)	34, 660
BmrFI	CCNGG	2 cut(s)	34, 660
BmsI	GCATC	3 cut(s)	330, 589, 628
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpuEI	CTTGAG	2 cut(s)	578, 830
BpuMI	CCSGG	1 cut(s)	660
Bsa29I	ATCGAT	1 cut(s)	801
BsaAI	YACGTR	1 cut(s)	409
BsaJI	CCNNGG	1 cut(s)	659
BsaWI	WCCGGW	1 cut(s)	858
Bse1I	ACTGG	2 cut(s)	63, 335
Bse3DI	GCAATG	1 cut(s)	680
BseBI	CCWGG	1 cut(s)	34
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	1 cut(s)	659
BseGI	GGATG	2 cut(s)	349, 604
BseMI	GCAATG	1 cut(s)	680
BseMII	CTCAG	1 cut(s)	722
BseNI	ACTGG	2 cut(s)	63, 335
BseRI	GAGGAG	3 cut(s)	227, 434, 955
BseXI	GCAGC	3 cut(s)	64, 395, 664
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	801
BsiHKAI	GWGCWC	2 cut(s)	20, 979
BsiSI	CCGG	2 cut(s)	659, 859
BslFI	GGGAC	1 cut(s)	894
BsmFI	GGGAC	1 cut(s)	894
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	20, 979
Bsp143I	GATC	5 cut(s)	39, 435, 445, 499, 841
BspACI	CCGC	6 cut(s)	278, 416, 523, 564, 602, 910
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	723
BspDI	ATCGAT	1 cut(s)	801
BspPI	GGATC	4 cut(s)	47, 443, 453, 849
BsrBI	CCGCTC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	680
BsrI	ACTGG	2 cut(s)	63, 335
BssECI	CCNNGG	1 cut(s)	659
BssMI	GATC	5 cut(s)	39, 435, 445, 499, 841
BssSI	CACGAG	1 cut(s)	972
Bst2BI	CACGAG	1 cut(s)	972
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	519
Bst6I	CTCTTC	1 cut(s)	204
BstAPI	GCANNNNNTGC	2 cut(s)	223, 677
BstBAI	YACGTR	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	731, 884
BstF5I	GGATG	2 cut(s)	349, 604
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	5 cut(s)	42, 438, 448, 502, 844
BstMBI	GATC	5 cut(s)	39, 435, 445, 499, 841
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 677
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	32, 658
BstV1I	GCAGC	3 cut(s)	64, 395, 664
BstX2I	RGATCY	3 cut(s)	39, 435, 841
BstYI	RGATCY	3 cut(s)	39, 435, 841
Bsu15I	ATCGAT	1 cut(s)	801
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	801
BtsCI	GGATG	2 cut(s)	349, 604
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 328
CfoI	GCGC	1 cut(s)	763
ClaI	ATCGAT	1 cut(s)	801
Csp6I	GTAC	3 cut(s)	261, 520, 888
CviAII	CATG	3 cut(s)	628, 698, 893
CviQI	GTAC	3 cut(s)	261, 520, 888
DdeI	CTNAG	2 cut(s)	731, 884
DpnI	GATC	5 cut(s)	41, 437, 447, 501, 843
DpnII	GATC	5 cut(s)	39, 435, 445, 499, 841
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	816
EcoICRI	GAGCTC	1 cut(s)	18
EcoRI	GAATTC	2 cut(s)	557, 785
EcoRII	CCWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	3 cut(s)	631, 701, 896
FaqI	GGGAC	1 cut(s)	894
FatI	CATG	3 cut(s)	627, 697, 892
FauI	CCCGC	1 cut(s)	903
Fnu4HI	GCNGC	4 cut(s)	78, 384, 603, 678
FokI	GGATG	2 cut(s)	336, 611
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	78, 384, 603, 678
FspBI	CTAG	1 cut(s)	779
FspI	TGCGCA	1 cut(s)	762
GlaI	GCGC	1 cut(s)	762
GluI	GCNGC	4 cut(s)	78, 384, 603, 678
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	659, 859
HhaI	GCGC	1 cut(s)	763
Hin1II	CATG	3 cut(s)	631, 701, 896
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	4 cut(s)	22, 182, 708, 803
HpaI	GTTAAC	1 cut(s)	369
HpaII	CCGG	2 cut(s)	659, 859
HphI	GGTGA	2 cut(s)	17, 349
Hpy166II	GTNNAC	3 cut(s)	261, 369, 890
Hpy188I	TCNGA	3 cut(s)	486, 775, 835
Hpy188III	TCNNGA	4 cut(s)	13, 50, 251, 313
Hpy8I	GTNNAC	3 cut(s)	261, 369, 890
HpyAV	CCTTC	2 cut(s)	527, 840
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	8 cut(s)	97, 383, 515, 641, 680, 692, 705, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 677
HpyF3I	CTNAG	2 cut(s)	731, 884
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	631, 701, 896
HspAI	GCGC	1 cut(s)	761
KspAI	GTTAAC	1 cut(s)	369
Kzo9I	GATC	5 cut(s)	39, 435, 445, 499, 841
LmnI	GCTCC	4 cut(s)	116, 214, 421, 588
Lsp1109I	GCAGC	3 cut(s)	64, 395, 664
LweI	GCATC	3 cut(s)	330, 589, 628
MaeI	CTAG	1 cut(s)	779
MaeII	ACGT	1 cut(s)	408
MalI	GATC	5 cut(s)	41, 437, 447, 501, 843
MbiI	CCGCTC	1 cut(s)	525
MboI	GATC	5 cut(s)	39, 435, 445, 499, 841
MboII	GAAGA	3 cut(s)	34, 65, 221
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	3 cut(s)	39, 435, 841
MhlI	GDGCHC	2 cut(s)	20, 979
MluCI	AATT	6 cut(s)	218, 494, 528, 557, 785, 960
MlyI	GAGTC	2 cut(s)	16, 717
MmeI	TCCRAC	1 cut(s)	610
MnlI	CCTC	9 cut(s)	205, 309, 391, 412, 547, 565, 666, 800, 933
MseI	TTAA	2 cut(s)	201, 368
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	2 cut(s)	659, 859
MspR9I	CCNGG	2 cut(s)	34, 660
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	223, 677
NciI	CCSGG	1 cut(s)	660
NdeII	GATC	5 cut(s)	39, 435, 445, 499, 841
NlaIII	CATG	3 cut(s)	631, 701, 896
NmeAIII	GCCGAG	1 cut(s)	727
NsbI	TGCGCA	1 cut(s)	762
PctI	GAATGC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	182, 803
PkrI	GCNGC	4 cut(s)	79, 385, 604, 679
PleI	GAGTC	2 cut(s)	16, 716
PpsI	GAGTC	2 cut(s)	16, 716
Ppu21I	YACGTR	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PsuI	RGATCY	3 cut(s)	39, 435, 841
RsaI	GTAC	3 cut(s)	262, 521, 889
RsaNI	GTAC	3 cut(s)	261, 520, 888
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	201, 368
SatI	GCNGC	4 cut(s)	78, 384, 603, 678
Sau3AI	GATC	5 cut(s)	39, 435, 445, 499, 841
SchI	GAGTC	2 cut(s)	16, 717
ScrFI	CCNGG	2 cut(s)	34, 660
SduI	GDGCHC	2 cut(s)	20, 979
SfaNI	GCATC	3 cut(s)	330, 589, 628
SmlI	CTYRAG	2 cut(s)	593, 845
SmoI	CTYRAG	2 cut(s)	593, 845
Sse9I	AATT	6 cut(s)	218, 494, 528, 557, 785, 960
SsiI	CCGC	6 cut(s)	278, 416, 523, 564, 602, 910
SspMI	CTAG	1 cut(s)	779
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	32, 658
TaaI	ACNGT	1 cut(s)	519
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	3 cut(s)	20, 783, 801
TasI	AATT	6 cut(s)	218, 494, 528, 557, 785, 960
TatI	WGTACW	1 cut(s)	887
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	2 cut(s)	182, 803
Tru1I	TTAA	2 cut(s)	201, 368
Tru9I	TTAA	2 cut(s)	201, 368
TscAI	CASTG	2 cut(s)	99, 335
TseI	GCWGC	3 cut(s)	77, 383, 677
TspDTI	ATGAA	2 cut(s)	260, 966
TspRI	CASTG	2 cut(s)	99, 335
XapI	RAATTY	4 cut(s)	494, 557, 785, 960
XspI	CTAG	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.