RLG00000001663

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003436
Physical Location & Seq
Forward (+)
18923682 .. 18924500
819 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001663

Sequence Viewer

Length: 681 bp
ATGGCCAATTTCCAGACCTCGACTCAGCGAACCAAGTGGATCTTGACGCCTGAACAACTGGTAGAGAAATACAAGGCTGCTAATCAAAGAGCAATAGAAACATTGGACAAGTATGGAGTAGCACTAGCGAAGGTAAACGATAATGCGTGTTTATCATACCCCGAAATTCGAAAAGAGAATTCTCGTCCGAAAGCACTCACCATTGAAGAGGAGCAATTGATGCGAGTATATTATGAAACTAAGCTTCAAGAAATAGAAGAAAGCTATATATCAGCAGAGCAGCTTGGTAATGGGATCTCACAGGATCCACAGATGATACTCAAATATGAGTTGATGGTTTATCAGAGTTTGGAATTTGATCTTATTGTGTTTGCACCATATCGCTCCGTTGAAGGGCTTATCCAAGATATGGAGGAATCCAGCTGCGGATTTAATGATGATGATCAGGTTCAAAAGCTAAAGCACAGTGCACTTATGGAAGTTGACAAGATCATGCTCACAGATGCGCCACTTCTGTTCCCTCCAGGACAGGTGGCCTTGGCTGCATTGCGAAGAGGAACTCAGGTGCACCGAGTAGTGGACTTTGGCAGATACCTAGGAAGCATGCTCTCTCGTCACGGTTCTGCTGCACATACCATTTCAGAGCTGGTTGAATGCCATGATGCAATTGATTCTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 ko04110 map03022 map03420 map04110
Pfam Domains
Protein Families
Cyclin_C_2 Cyclin_N

Protein Analysis

227

Amino Acids

25.61

Weight (kDa)

4.96

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C_2 PF16899 126 - 210 1.4e-09 Cyclin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 409
AciI CCGC 1 cut(s) 426
AclWI GGATC 4 cut(s) 47, 299, 302, 312
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 165, 178, 353
AcyI GRCGYC 1 cut(s) 47
AfiI CCNNNNNNNGG 3 cut(s) 393, 409, 577
AgsI TTSAA 5 cut(s) 206, 248, 392, 452, 653
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 6 cut(s) 244, 264, 283, 423, 457, 646
AluI AGCT 6 cut(s) 244, 264, 283, 423, 457, 646
Alw21I GWGCWC 2 cut(s) 472, 570
Alw44I GTGCAC 2 cut(s) 468, 566
AlwI GGATC 4 cut(s) 47, 299, 302, 312
AoxI GGCC 2 cut(s) 3, 534
ApaLI GTGCAC 2 cut(s) 468, 566
ApeKI GCWGC 5 cut(s) 77, 280, 423, 542, 626
ApoI RAATTY 3 cut(s) 165, 178, 353
AspA2I CCTAGG 1 cut(s) 595
AspLEI GCGC 1 cut(s) 508
AsuHPI GGTGA 1 cut(s) 190
AsuII TTCGAA 1 cut(s) 169
AvrII CCTAGG 1 cut(s) 595
BaeGI GKGCMC 2 cut(s) 472, 570
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 304
Bbv12I GWGCWC 2 cut(s) 472, 570
BbvI GCAGC 5 cut(s) 64, 292, 410, 529, 613
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 525
BclI TGATCA 1 cut(s) 442
BfaI CTAG 2 cut(s) 125, 596
BisI GCNGC 5 cut(s) 78, 281, 424, 543, 627
BlnI CCTAGG 1 cut(s) 595
BlsI GCNGC 5 cut(s) 79, 282, 425, 544, 628
Bme1390I CCNGG 1 cut(s) 525
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 3 cut(s) 210, 493, 652
BpmI CTGGAG 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 537, 595
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 409, 577
Bse1I ACTGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 545
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 537, 595
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 3 cut(s) 393, 409, 577
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 2 cut(s) 38, 575
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 224
BseSI GKGCMC 2 cut(s) 472, 570
BseXI GCAGC 5 cut(s) 64, 292, 410, 529, 613
BsgI GTGCAG 1 cut(s) 612
BshFI GGCC 2 cut(s) 5, 536
BsiHKAI GWGCWC 2 cut(s) 472, 570
BslI CCNNNNNNNGG 3 cut(s) 393, 409, 577
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 2 cut(s) 5, 536
Bsp119I TTCGAA 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 472, 570
Bsp143I GATC 6 cut(s) 39, 294, 304, 358, 442, 489
BspACI CCGC 1 cut(s) 426
BspANI GGCC 2 cut(s) 5, 536
BspCNI CTCAG 2 cut(s) 37, 574
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 4 cut(s) 47, 299, 302, 312
BspT104I TTCGAA 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 545
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 537, 595
BssMI GATC 6 cut(s) 39, 294, 304, 358, 442, 489
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 537, 595
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 467, 620
Bst6I CTCTTC 2 cut(s) 201, 547
BstACI GRCGYC 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 3 cut(s) 24, 240, 561
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 6 cut(s) 42, 297, 307, 361, 445, 492
BstMBI GATC 6 cut(s) 39, 294, 304, 358, 442, 489
BstMWI GCNNNNNNNGC 2 cut(s) 220, 542
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 1 cut(s) 523
BstSLI GKGCMC 2 cut(s) 472, 570
BstV1I GCAGC 5 cut(s) 64, 292, 410, 529, 613
BstX2I RGATCY 3 cut(s) 39, 294, 304
BstYI RGATCY 3 cut(s) 39, 294, 304
BsuRI GGCC 2 cut(s) 5, 536
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 605
CfoI GCGC 1 cut(s) 508
CseI GACGC 1 cut(s) 55
CviAII CATG 3 cut(s) 493, 604, 659
DdeI CTNAG 3 cut(s) 24, 240, 561
DpnI GATC 6 cut(s) 41, 296, 306, 360, 444, 491
DpnII GATC 6 cut(s) 39, 294, 304, 358, 442, 489
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 201, 547
EarI CTCTTC 2 cut(s) 201, 547
Eco130I CCWWGG 2 cut(s) 537, 595
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 537, 595
ErhI CCWWGG 2 cut(s) 537, 595
FaeI CATG 3 cut(s) 496, 607, 662
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 3 cut(s) 492, 603, 658
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 5 cut(s) 78, 281, 424, 543, 627
Fsp4HI GCNGC 5 cut(s) 78, 281, 424, 543, 627
FspBI CTAG 2 cut(s) 125, 596
GlaI GCGC 1 cut(s) 507
GluI GCNGC 5 cut(s) 78, 281, 424, 543, 627
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 5, 536
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 508
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 3 cut(s) 496, 607, 662
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 3 cut(s) 22, 416, 671
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 5 cut(s) 136, 470, 484, 568, 580
Hpy188I TCNGA 3 cut(s) 189, 345, 643
Hpy188III TCNNGA 3 cut(s) 13, 43, 248
Hpy8I GTNNAC 5 cut(s) 136, 470, 484, 568, 580
HpyAV CCTTC 2 cut(s) 124, 386
HpyCH4III ACNGT 2 cut(s) 467, 620
HpyCH4V TGCA 6 cut(s) 374, 470, 545, 568, 629, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 542
HpyF3I CTNAG 3 cut(s) 24, 240, 561
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 3 cut(s) 496, 607, 662
HspAI GCGC 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 6 cut(s) 39, 294, 304, 358, 442, 489
LmnI GCTCC 2 cut(s) 211, 389
Lsp1109I GCAGC 5 cut(s) 64, 292, 410, 529, 613
LweI GCATC 3 cut(s) 210, 493, 652
MaeI CTAG 2 cut(s) 125, 596
MaeIII GTNAC 1 cut(s) 614
MalI GATC 6 cut(s) 41, 296, 306, 360, 444, 491
MboI GATC 6 cut(s) 39, 294, 304, 358, 442, 489
MboII GAAGA 3 cut(s) 218, 269, 564
MfeI CAATTG 2 cut(s) 215, 666
MflI RGATCY 3 cut(s) 39, 294, 304
MhlI GDGCHC 2 cut(s) 472, 570
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 7, 165, 178, 215, 353, 666
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 5 cut(s) 28, 202, 406, 531, 548
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 525
MunI CAATTG 2 cut(s) 215, 666
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 2 cut(s) 220, 542
NdeII GATC 6 cut(s) 39, 294, 304, 358, 442, 489
NlaIII CATG 3 cut(s) 496, 607, 662
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 614
NspI RCATGY 1 cut(s) 607
NspV TTCGAA 1 cut(s) 169
PaeI GCATGC 1 cut(s) 607
PctI GAATGC 1 cut(s) 659
PfeI GAWTC 2 cut(s) 416, 671
PflMI CCANNNNNTGG 1 cut(s) 409
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 5 cut(s) 79, 282, 425, 544, 628
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 306
PsuI RGATCY 3 cut(s) 39, 294, 304
PvuII CAGCTG 1 cut(s) 423
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 5 cut(s) 78, 281, 424, 543, 627
Sau3AI GATC 6 cut(s) 39, 294, 304, 358, 442, 489
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 2 cut(s) 472, 570
SfaNI GCATC 3 cut(s) 210, 493, 652
SfuI TTCGAA 1 cut(s) 169
SphI GCATGC 1 cut(s) 607
Sse9I AATT 6 cut(s) 7, 165, 178, 215, 353, 666
SsiI CCGC 1 cut(s) 426
SspMI CTAG 2 cut(s) 125, 596
StyD4I CCNGG 1 cut(s) 523
StyI CCWWGG 2 cut(s) 537, 595
TaaI ACNGT 2 cut(s) 467, 620
TaqI TCGA 2 cut(s) 20, 169
TasI AATT 6 cut(s) 7, 165, 178, 215, 353, 666
TfiI GAWTC 2 cut(s) 416, 671
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 5 cut(s) 77, 280, 423, 542, 626
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 1 cut(s) 249
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 409
VneI GTGCAC 2 cut(s) 468, 566
XapI RAATTY 3 cut(s) 165, 178, 353
XceI RCATGY 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XmaJI CCTAGG 1 cut(s) 595
XspI CTAG 2 cut(s) 125, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.