Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003436

Physical Location & Seq

Genomic Coordinates Forward (+)

4554452 .. 4558612

Gene Structure 4161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG067500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCCGATTTCCAGACCTCGACTCACCGAAGCAAGTGGATCTTCACGCCCGAACAGCTGGCCGAAAAATACAAGGCTGCGAATCAGCAAGCAATAGAAACATTGGAGAAGTATGGAGTAGCACTAGCGAAGGTAAATGATGACGGGTCATTAACGTACCCTGAAATTGCCAAAGAGAATGCTGACAAGCATTCTCGTCCAAAAGCGGTTACCATTGAAGAGGAGCAATTGATGAGAGTATTTTATGAAACTAAACTTCAAGAAGTGTGTAACAACTTTCATTTCCCTCATAAAGTTCAGGCAACAGCGCTCATATATTTTAAAAGGTTTTATCTAAGATGGTCAGTTATGCAACATGAACCAAAAAATATAATATTAACCTGTATATATGCGGCTTGTAAGATAGAAGAAAGCCATGTATCAGCAGAGGAGCTTGGTAAGGGGATCTCACAGGATCATCAAATGATACTCAATAATGAGTTGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTCTATGCACCATATCGCTCAGTTCAAGGTTTTATCCATGATATGGAGGAATCCTGCGGATTAGAGGATGACCAGCTTCCAATGCTTCAGACTTTGCGGGACACTGCAAAGATGGATGTTGATAAAATCATGCTCACAGATGCACCACTTCTATTCCCTCCTGGACAGTTGGCCTTGGCTGCGCTGCGTAGTGCAAATCAGGTGCACAAAGTTGTTGACTTTGACAGATACCTGGAGAGCATGCTCTCTCGTAAGAGTTCTGCACATACCATTTCAGAGCTAGTTGAATCCCTTAATGCAATTGATTCTTGGGTAAGGAGATACAAATTTCCTTCTGACAAGGAAATCCTGCACATCAATCGGAAACTGAAATCTTGTTGGGGTCAAAGTTCGCGTGACGAAAGCAAGAAGCGGGATAAGAAATCAAAGCACAAGTCCAAGAGGGGTTCAAATGAAGCCCAAAATGTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Cyclin_C_2 Cyclin_N

Protein Analysis

329

Amino Acids

37.96

Weight (kDa)

6.87

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	75 - 171	1.3e-11	Cyclin, N-terminal domain
TFIIB	PF00382	84 - 145	3.7e-07	Transcription factor TFIIB repeat
Cyclin_C_2	PF16899	176 - 274	7.8e-13	Cyclin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27620 AT5G27620 AT5G27620
fragaria_vesca	FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200
malus_domestica	MD04G1203400.v1.1 MD04G1203500.v1.1 MD12G1217300.v1.1
prunus_persica	Prupe.2G191000_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1
pyrus_communis	pycom04g17990 pycom12g20280
rosa_chinensis	RchiOBHm_Chr3g0455221 RchiOBHm_Chr7g0227161
rosa_laevigata	RLG00000001663 RLG00000025376
rosa_multiflora	Rmu_sc0002169.1_g000032
rosa_roxburghii	Rroxscaffold_3G00232260 Rroxscaffold_6G00424460
rosa_rugosa	Rorug03G0005100.1 Rorug03G0005200 Rorug03G0005300 Rorug03G0005400 Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh3AG065300 Rh3BG067500 Rh3CG065900 Rh3DG067500 Rh7BG376000
rosa_wichuraiana	Rw3G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	559
AccII	CGCG	1 cut(s)	910
AciI	CCGC	5 cut(s)	206, 392, 573, 613, 928
AclWI	GGATC	3 cut(s)	47, 452, 462
AcoI	YGGCCR	2 cut(s)	3, 60
AcsI	RAATTY	2 cut(s)	503, 842
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	158
AfeI	AGCGCT	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	5 cut(s)	218, 260, 542, 803, 966
AjnI	CCWGG	2 cut(s)	676, 747
AluBI	AGCT	4 cut(s)	58, 433, 592, 796
AluI	AGCT	4 cut(s)	58, 433, 592, 796
Alw21I	GWGCWC	1 cut(s)	723
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	3 cut(s)	47, 452, 462
Aor51HI	AGCGCT	1 cut(s)	309
AoxI	GGCC	3 cut(s)	3, 60, 687
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	3 cut(s)	77, 695, 700
ApoI	RAATTY	2 cut(s)	503, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	935, 967
AspLEI	GCGC	2 cut(s)	310, 700
AsuHPI	GGTGA	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	3 cut(s)	64, 682, 687
BccI	CCATC	2 cut(s)	333, 622
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	2 cut(s)	678, 749
BfaI	CTAG	2 cut(s)	125, 797
BfoI	RGCGCY	1 cut(s)	311
BisI	GCNGC	4 cut(s)	78, 393, 696, 701
BlsI	GCNGC	4 cut(s)	79, 394, 697, 702
Bme1390I	CCNGG	2 cut(s)	678, 749
BmrFI	CCNGG	2 cut(s)	678, 749
BmsI	GCATC	1 cut(s)	646
BpmI	CTGGAG	1 cut(s)	770
BsaJI	CCNNGG	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
BseBI	CCWGG	2 cut(s)	678, 749
BseDI	CCNNGG	1 cut(s)	690
BseGI	GGATG	2 cut(s)	589, 637
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	1 cut(s)	549
BseRI	GAGGAG	2 cut(s)	236, 443
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	3 cut(s)	64, 682, 687
BsgI	GTGCAG	2 cut(s)	762, 851
Bsh1236I	CGCG	1 cut(s)	910
BshFI	GGCC	3 cut(s)	5, 62, 689
BsiHKAI	GWGCWC	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	2 cut(s)	184, 190
BsnI	GGCC	3 cut(s)	5, 62, 689
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	4 cut(s)	39, 444, 454, 508
BspACI	CCGC	5 cut(s)	206, 392, 573, 613, 928
BspANI	GGCC	3 cut(s)	5, 62, 689
BspCNI	CTCAG	1 cut(s)	548
BspFNI	CGCG	1 cut(s)	910
BspPI	GGATC	3 cut(s)	47, 452, 462
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	4 cut(s)	39, 444, 454, 508
BssT1I	CCWWGG	1 cut(s)	690
Bst2UI	CCWGG	2 cut(s)	678, 749
Bst4CI	ACNGT	1 cut(s)	684
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	3 cut(s)	60, 90, 758
BstDEI	CTNAG	2 cut(s)	335, 535
BstEII	GGTNACC	1 cut(s)	208
BstF5I	GGATG	2 cut(s)	589, 637
BstFNI	CGCG	1 cut(s)	910
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	310, 700
BstKTI	GATC	4 cut(s)	42, 447, 457, 511
BstMBI	GATC	4 cut(s)	39, 444, 454, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 598, 695
BstNI	CCWGG	2 cut(s)	678, 749
BstNSI	RCATGY	1 cut(s)	760
BstPI	GGTNACC	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	676, 747
BstSLI	GKGCMC	1 cut(s)	723
BstUI	CGCG	1 cut(s)	910
BstV1I	GCAGC	3 cut(s)	64, 682, 687
BstX2I	RGATCY	2 cut(s)	39, 444
BstYI	RGATCY	2 cut(s)	39, 444
BsuRI	GGCC	3 cut(s)	5, 62, 689
BtsCI	GGATG	2 cut(s)	589, 637
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	3 cut(s)	60, 90, 758
CfoI	GCGC	2 cut(s)	310, 700
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	5 cut(s)	356, 416, 554, 646, 757
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	335, 535
DpnI	GATC	4 cut(s)	41, 446, 456, 510
DpnII	GATC	4 cut(s)	39, 444, 454, 508
DraI	TTTAAA	1 cut(s)	322
EaeI	YGGCCR	2 cut(s)	3, 60
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	690
Eco47III	AGCGCT	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	587
Eco91I	GGTNACC	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	676, 747
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	5 cut(s)	359, 419, 557, 649, 760
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	5 cut(s)	355, 415, 553, 645, 756
FauI	CCCGC	2 cut(s)	606, 921
Fnu4HI	GCNGC	4 cut(s)	78, 393, 696, 701
FokI	GGATG	2 cut(s)	596, 644
Fsp4HI	GCNGC	4 cut(s)	78, 393, 696, 701
FspBI	CTAG	2 cut(s)	125, 797
GlaI	GCGC	2 cut(s)	309, 699
GluI	GCNGC	4 cut(s)	78, 393, 696, 701
GsuI	CTGGAG	1 cut(s)	770
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	5, 62, 689
HhaI	GCGC	2 cut(s)	310, 700
Hin1II	CATG	5 cut(s)	359, 419, 557, 649, 760
Hin6I	GCGC	2 cut(s)	308, 698
HinP1I	GCGC	2 cut(s)	308, 698
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HinfI	GANTC	5 cut(s)	22, 82, 566, 803, 821
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	721, 733
Hpy188I	TCNGA	5 cut(s)	495, 606, 793, 853, 879
Hpy188III	TCNNGA	2 cut(s)	13, 260
Hpy8I	GTNNAC	2 cut(s)	721, 733
HpyAV	CCTTC	2 cut(s)	124, 858
HpyCH4III	ACNGT	1 cut(s)	684
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	9 cut(s)	352, 524, 623, 659, 710, 721, 779, 815, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 598, 695
HpyF3I	CTNAG	2 cut(s)	335, 535
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	5 cut(s)	359, 419, 557, 649, 760
HspAI	GCGC	2 cut(s)	308, 698
Kzo9I	GATC	4 cut(s)	39, 444, 454, 508
LmnI	GCTCC	2 cut(s)	223, 430
Lsp1109I	GCAGC	3 cut(s)	64, 682, 687
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	2 cut(s)	125, 797
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	4 cut(s)	208, 269, 911, 982
MalI	GATC	4 cut(s)	41, 446, 456, 510
MboI	GATC	4 cut(s)	39, 444, 454, 508
MboII	GAAGA	3 cut(s)	34, 230, 419
MfeI	CAATTG	2 cut(s)	227, 816
MflI	RGATCY	2 cut(s)	39, 444
MhlI	GDGCHC	1 cut(s)	723
MluCI	AATT	5 cut(s)	165, 227, 503, 816, 842
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	8 cut(s)	28, 214, 297, 421, 556, 574, 684, 951
MseI	TTAA	4 cut(s)	152, 321, 377, 810
MspA1I	CMGCKG	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	678, 749
MunI	CAATTG	2 cut(s)	227, 816
Mva1269I	GAATGC	2 cut(s)	184, 190
MvaI	CCWGG	2 cut(s)	678, 749
MvnI	CGCG	1 cut(s)	910
MwoI	GCNNNNNNNGC	3 cut(s)	55, 598, 695
NdeII	GATC	4 cut(s)	39, 444, 454, 508
NlaIII	CATG	5 cut(s)	359, 419, 557, 649, 760
NmuCI	GTSAC	1 cut(s)	911
NspI	RCATGY	1 cut(s)	760
PaeI	GCATGC	1 cut(s)	760
PctI	GAATGC	2 cut(s)	184, 190
PfeI	GAWTC	4 cut(s)	82, 566, 803, 821
PflMI	CCANNNNNTGG	1 cut(s)	559
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	4 cut(s)	79, 394, 697, 702
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	676, 747
PspEI	GGTNACC	1 cut(s)	208
PspGI	CCWGG	2 cut(s)	676, 747
PsuI	RGATCY	2 cut(s)	39, 444
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	4 cut(s)	152, 321, 377, 810
SatI	GCNGC	4 cut(s)	78, 393, 696, 701
Sau3AI	GATC	4 cut(s)	39, 444, 454, 508
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	678, 749
SduI	GDGCHC	1 cut(s)	723
SfaNI	GCATC	1 cut(s)	646
SphI	GCATGC	1 cut(s)	760
Sse9I	AATT	5 cut(s)	165, 227, 503, 816, 842
SsiI	CCGC	5 cut(s)	206, 392, 573, 613, 928
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	2 cut(s)	125, 797
StyD4I	CCNGG	2 cut(s)	676, 747
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	1 cut(s)	684
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	165, 227, 503, 816, 842
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	4 cut(s)	82, 566, 803, 821
Tru1I	TTAA	4 cut(s)	152, 321, 377, 810
Tru9I	TTAA	4 cut(s)	152, 321, 377, 810
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	3 cut(s)	77, 695, 700
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	4 cut(s)	261, 269, 372, 984
TspRI	CASTG	1 cut(s)	625
Van91I	CCANNNNNTGG	1 cut(s)	559
VneI	GTGCAC	1 cut(s)	719
XapI	RAATTY	2 cut(s)	503, 842
XceI	RCATGY	1 cut(s)	760
XspI	CTAG	2 cut(s)	125, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.