Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003436

Physical Location & Seq

Genomic Coordinates Reverse (-)

28957029 .. 28962606

Gene Structure 5578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1203400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAAGTAGACGTTGATGGAACATTGTCATACCCGAAACCCCAAGTTAATGCCGATTCCCGTCCAAAACCCATTAGCATTGAAGAGGAGCAATTTATGCGAGTATTTTATGAGAACAAAGTTCAAGAAGTTTGTACCAACTTTCACTTTCCGCATAAAGTTCAGGTATGCGGCAACGGCTCTCATATATTTCAAGAGGTTTTATCTACAGTGGTCGGTGATGCAACATCATCCAAAAACTATAATGTTAACCTGTATAACCACGTATCAGTAGAGGAGCTTGGTAAGGGAATCTCACAGGATCATCAAATGATTCTCAGTAATGAGATAATAATTTATCAGACTTTGGAATTTGATCTTATTGTTTATGCACCATACCTCTCAATTGAAGGATTTGTCAATGATATTGAAGAATTCTGCAGATTAGAGGATAACCAGCTCCAATATCTGAAGACGGAAGTTGATAAAATCATGCTCACAGATGCACCACTCCCTTTCCCTCCTGGGCAGGTTTGCAGAGTTGCCGACTTTGAGAGATACCTGAGTAGCATTCTCTCTCGGCAGAGTTCTGCGCATACTATTTCAGAGCTAGTCAAATTCCTTAACGCAATCGATTCTTGGGCAAAAAGATACAAGTTTCCTTCGGACAAGGATCTCAAGCACATCAATCGGAACCTGAAGTCTTGTTGGGGTCTTAGTACGCATGACGAGAGCAAGAAGCGGGATAAGAAATCAAAGCACAAGTCGAAAAGGAGCATCACCAACCCAATTGAACCGGGTCCAGCATTGAATTGGGTCGGGTCGGGTCGGGTTTGGGTAGGTGGAAGACATTGTTGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko04110 map03022 map03420 map04110

Pfam Domains

Protein Families

Cyclin_C_2 Cyclin_N

Protein Analysis

281

Amino Acids

31.98

Weight (kDa)

6.37

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27620 AT5G27620 AT5G27620
fragaria_vesca	FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200 FvH4_6g06200
malus_domestica	MD04G1203400.v1.1 MD04G1203500.v1.1 MD12G1217300.v1.1
prunus_persica	Prupe.2G191000_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1 Prupe.6G323600_v2.0.a1
pyrus_communis	pycom04g17990 pycom12g20280
rosa_chinensis	RchiOBHm_Chr3g0455221 RchiOBHm_Chr7g0227161
rosa_laevigata	RLG00000001663 RLG00000025376
rosa_multiflora	Rmu_sc0002169.1_g000032
rosa_roxburghii	Rroxscaffold_3G00232260 Rroxscaffold_6G00424460
rosa_rugosa	Rorug03G0005100.1 Rorug03G0005200 Rorug03G0005300 Rorug03G0005400 Rorug07G0241000 Rorug07G0241000
rosa_samantha	Rh3AG065300 Rh3BG067500 Rh3CG065900 Rh3DG067500 Rh7BG376000
rosa_wichuraiana	Rw3G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	573
Acc36I	ACCTGC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	3 cut(s)	152, 171, 721
AclWI	GGATC	2 cut(s)	309, 660
AcsI	RAATTY	3 cut(s)	350, 413, 596
AcuI	CTGAAG	2 cut(s)	470, 698
AfaI	GTAC	2 cut(s)	136, 700
AgsI	TTSAA	7 cut(s)	83, 125, 194, 389, 410, 773, 790
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	3 cut(s)	280, 439, 589
AluI	AGCT	3 cut(s)	280, 439, 589
AlwI	GGATC	2 cut(s)	309, 660
ApoI	RAATTY	3 cut(s)	350, 413, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	779
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	2 cut(s)	230, 751
AvaII	GGWCC	1 cut(s)	779
BaeI	ACNNNNGTAYC	2 cut(s)	529, 562
BbsI	GAAGAC	2 cut(s)	458, 832
BccI	CCATC	1 cut(s)	11
BceAI	ACGGC	1 cut(s)	193
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	777
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	2 cut(s)	207, 418
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	504, 777
Bme18I	GGWCC	1 cut(s)	779
BmgT120I	GGNCC	1 cut(s)	779
BmiI	GGNNCC	2 cut(s)	674, 780
BmrFI	CCNGG	2 cut(s)	504, 777
BmsI	GCATC	3 cut(s)	211, 472, 765
BpiI	GAAGAC	2 cut(s)	458, 832
BpuEI	CTTGAG	1 cut(s)	641
BpuMI	CCSGG	1 cut(s)	777
Bsa29I	ATCGAT	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	504
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	503
BseGI	GGATG	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	331, 533
BseRI	GAGGAG	2 cut(s)	101, 290
BshVI	ATCGAT	1 cut(s)	612
BsiSI	CCGG	1 cut(s)	776
BsmI	GAATGC	1 cut(s)	549
Bsp143I	GATC	3 cut(s)	301, 355, 652
BspACI	CCGC	3 cut(s)	152, 171, 721
BspCNI	CTCAG	2 cut(s)	330, 534
BspDI	ATCGAT	1 cut(s)	612
BspLI	GGNNCC	2 cut(s)	674, 780
BspMAI	CTGCAG	1 cut(s)	422
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	2 cut(s)	309, 660
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	3 cut(s)	301, 355, 652
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	265
BstDEI	CTNAG	3 cut(s)	317, 542, 695
BstF5I	GGATG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	3 cut(s)	304, 358, 655
BstMBI	GATC	3 cut(s)	301, 355, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 177
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	2 cut(s)	502, 775
BstSFI	CTRYAG	2 cut(s)	207, 418
BstV2I	GAAGAC	2 cut(s)	458, 832
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
Bsu15I	ATCGAT	1 cut(s)	612
BsuTUI	ATCGAT	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	499
CfoI	GCGC	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	779
ClaI	ATCGAT	1 cut(s)	612
Csp6I	GTAC	2 cut(s)	135, 699
CviAII	CATG	2 cut(s)	472, 704
CviJI	RGCY	4 cut(s)	180, 280, 439, 589
CviKI_1	RGCY	4 cut(s)	180, 280, 439, 589
CviQI	GTAC	2 cut(s)	135, 699
DdeI	CTNAG	3 cut(s)	317, 542, 695
DpnI	GATC	3 cut(s)	303, 357, 654
DpnII	GATC	3 cut(s)	301, 355, 652
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	779
Eco57I	CTGAAG	2 cut(s)	470, 698
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	502
FaeI	CATG	2 cut(s)	475, 707
FatI	CATG	2 cut(s)	471, 703
FauI	CCCGC	1 cut(s)	714
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	590
FspI	TGCGCA	1 cut(s)	573
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	1 cut(s)	172
HapII	CCGG	1 cut(s)	776
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	2 cut(s)	475, 707
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	4 cut(s)	56, 291, 313, 614
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	776
HphI	GGTGA	2 cut(s)	230, 751
Hpy166II	GTNNAC	2 cut(s)	10, 250
Hpy188I	TCNGA	5 cut(s)	342, 450, 586, 646, 672
Hpy188III	TCNNGA	3 cut(s)	125, 194, 840
Hpy8I	GTNNAC	2 cut(s)	10, 250
HpyAV	CCTTC	2 cut(s)	383, 651
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	2 cut(s)	12, 264
HpyCH4V	TGCA	5 cut(s)	224, 371, 420, 485, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 177
HpyF3I	CTNAG	3 cut(s)	317, 542, 695
HpySE526I	ACGT	2 cut(s)	12, 264
Hsp92II	CATG	2 cut(s)	475, 707
HspAI	GCGC	1 cut(s)	572
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	301, 355, 652
LmnI	GCTCC	5 cut(s)	88, 277, 444, 753, 842
LweI	GCATC	3 cut(s)	211, 472, 765
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	2 cut(s)	12, 264
MalI	GATC	3 cut(s)	303, 357, 654
MboI	GATC	3 cut(s)	301, 355, 652
MboII	GAAGA	4 cut(s)	95, 422, 463, 837
MfeI	CAATTG	2 cut(s)	384, 768
MflI	RGATCY	1 cut(s)	652
MluCI	AATT	8 cut(s)	92, 333, 350, 384, 413, 596, 768, 790
MnlI	CCTC	6 cut(s)	79, 190, 268, 389, 421, 510
MseI	TTAA	3 cut(s)	48, 249, 603
MspI	CCGG	1 cut(s)	776
MspR9I	CCNGG	2 cut(s)	504, 777
MunI	CAATTG	2 cut(s)	384, 768
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	97, 177
NciI	CCSGG	1 cut(s)	777
NdeII	GATC	3 cut(s)	301, 355, 652
NlaIII	CATG	2 cut(s)	475, 707
NlaIV	GGNNCC	2 cut(s)	674, 780
NmeAIII	GCCGAG	1 cut(s)	538
NsbI	TGCGCA	1 cut(s)	573
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	4 cut(s)	56, 291, 313, 614
PkrI	GCNGC	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	674, 780
PspPI	GGNCC	1 cut(s)	779
PstI	CTGCAG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	2 cut(s)	136, 700
RsaNI	GTAC	2 cut(s)	135, 699
SaqAI	TTAA	3 cut(s)	48, 249, 603
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	3 cut(s)	301, 355, 652
Sau96I	GGNCC	1 cut(s)	779
ScrFI	CCNGG	2 cut(s)	504, 777
SfaNI	GCATC	3 cut(s)	211, 472, 765
SfcI	CTRYAG	2 cut(s)	207, 418
SinI	GGWCC	1 cut(s)	779
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	8 cut(s)	92, 333, 350, 384, 413, 596, 768, 790
SsiI	CCGC	3 cut(s)	152, 171, 721
SspMI	CTAG	1 cut(s)	590
StyD4I	CCNGG	2 cut(s)	502, 775
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	2 cut(s)	15, 267
TaqI	TCGA	2 cut(s)	612, 746
TasI	AATT	8 cut(s)	92, 333, 350, 384, 413, 596, 768, 790
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	4 cut(s)	56, 291, 313, 614
Tru1I	TTAA	3 cut(s)	48, 249, 603
Tru9I	TTAA	3 cut(s)	48, 249, 603
TscAI	CASTG	1 cut(s)	216
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	779
XapI	RAATTY	3 cut(s)	350, 413, 596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	789
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.