Rh3AG065300

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
4554452 .. 4558690
4239 bp
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UTR
Exon/CDS
Intron
Rh3AG065300.1

Sequence Viewer

Length: 750 bp
ATGGCCGATTTCCAGACCTCGACTCACCGAAGCAAGTGGATCTTCACGCCCGAACAGCTGGCCGAAAAATACAAGGCTGCGAATCAGCAAGCAATAGAAACATTGGAGAAGTATGGAGTAGCACTAGCGAAGGTAAATGATGACGGGTCATTAACGTACCCTGAAATTGCCAAAGAGAATGCTGACAAGCATTCTCGTCCAAAAGCGGTTACCATTGAAGAGGAGCAATTGATGAGAGTATTTTATGAAACTAAACTTCAAGAAGTGTGTAACAACTTTCATTTCCCTCATAAAGTTCAGGCAACAGCGCTCATATATTTTAAAAGGTTTTATCTAAGATGGTCAGTTATGCAACATGAACCAAAAAATATAATATTAACCTGTATATATGCGGCTTGTAAGATAGAAGAAAGCCATGTATCAGCAGAGGAGCTTGGTAAGGGGATCTCACAGGATCATCAAATGATACTCAATAATGAGTTGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTCTATGCACCATATCGCTCAGTTCAAGGTTTTATCCATGATATGGAGGAATCCTGCGGATTAGAGGATGACCAGCTTCCAATGCTTCAGACTTTGCGGGACACTGCAAAGATGGATGTTGATAAAATCATGCTCACAGATGCACCACTTCTATTCCCTCCTGGACAGTTGGCCTTGGCTGCGCTGCGTAGTGCAAATCAGGTGCACAAAGTTGTTGACTTTGACAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141
Pfam Domains
Protein Families

Protein Analysis

249

Amino Acids

28.68

Weight (kDa)

5.39

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 75 - 171 6.7e-12 Cyclin, N-terminal domain
TFIIB PF00382 84 - 145 2.2e-07 Transcription factor TFIIB repeat
Cyclin_C_2 PF16899 176 - 240 5.5e-09 Cyclin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 559
AciI CCGC 4 cut(s) 206, 392, 573, 613
AclWI GGATC 3 cut(s) 47, 452, 462
AcoI YGGCCR 2 cut(s) 3, 60
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 1 cut(s) 158
AfeI AGCGCT 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 3 cut(s) 218, 260, 542
AjnI CCWGG 1 cut(s) 676
AluBI AGCT 3 cut(s) 58, 433, 592
AluI AGCT 3 cut(s) 58, 433, 592
Alw21I GWGCWC 1 cut(s) 723
Alw44I GTGCAC 1 cut(s) 719
AlwI GGATC 3 cut(s) 47, 452, 462
Aor51HI AGCGCT 1 cut(s) 309
AoxI GGCC 3 cut(s) 3, 60, 687
ApaLI GTGCAC 1 cut(s) 719
ApeKI GCWGC 3 cut(s) 77, 695, 700
ApoI RAATTY 1 cut(s) 503
AspLEI GCGC 2 cut(s) 310, 700
AsuHPI GGTGA 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 723
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 3 cut(s) 64, 682, 687
BccI CCATC 2 cut(s) 333, 622
BciT130I CCWGG 1 cut(s) 678
BfaI CTAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 311
BisI GCNGC 4 cut(s) 78, 393, 696, 701
BlsI GCNGC 4 cut(s) 79, 394, 697, 702
Bme1390I CCNGG 1 cut(s) 678
BmrFI CCNGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 646
BsaJI CCNNGG 1 cut(s) 690
Bsc4I CCNNNNNNNGG 1 cut(s) 559
BseBI CCWGG 1 cut(s) 678
BseDI CCNNGG 1 cut(s) 690
BseGI GGATG 2 cut(s) 589, 637
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 1 cut(s) 549
BseRI GAGGAG 2 cut(s) 236, 443
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 3 cut(s) 64, 682, 687
BshFI GGCC 3 cut(s) 5, 62, 689
BsiHKAI GWGCWC 1 cut(s) 723
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 559
BsmFI GGGAC 1 cut(s) 629
BsmI GAATGC 2 cut(s) 184, 190
BsnI GGCC 3 cut(s) 5, 62, 689
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 4 cut(s) 39, 444, 454, 508
BspACI CCGC 4 cut(s) 206, 392, 573, 613
BspANI GGCC 3 cut(s) 5, 62, 689
BspCNI CTCAG 1 cut(s) 548
BspPI GGATC 3 cut(s) 47, 452, 462
BssECI CCNNGG 1 cut(s) 690
BssMI GATC 4 cut(s) 39, 444, 454, 508
BssT1I CCWWGG 1 cut(s) 690
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 1 cut(s) 684
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 60, 90
BstDEI CTNAG 2 cut(s) 335, 535
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 2 cut(s) 589, 637
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 2 cut(s) 310, 700
BstKTI GATC 4 cut(s) 42, 447, 457, 511
BstMBI GATC 4 cut(s) 39, 444, 454, 508
BstMWI GCNNNNNNNGC 3 cut(s) 55, 598, 695
BstNI CCWGG 1 cut(s) 678
BstPI GGTNACC 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 676
BstSLI GKGCMC 1 cut(s) 723
BstV1I GCAGC 3 cut(s) 64, 682, 687
BstX2I RGATCY 2 cut(s) 39, 444
BstYI RGATCY 2 cut(s) 39, 444
BsuRI GGCC 3 cut(s) 5, 62, 689
BtsCI GGATG 2 cut(s) 589, 637
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 618
Cac8I GCNNGC 2 cut(s) 60, 90
CfoI GCGC 2 cut(s) 310, 700
Csp6I GTAC 1 cut(s) 157
CviAII CATG 4 cut(s) 356, 416, 554, 646
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 335, 535
DpnI GATC 4 cut(s) 41, 446, 456, 510
DpnII GATC 4 cut(s) 39, 444, 454, 508
DraI TTTAAA 1 cut(s) 322
EaeI YGGCCR 2 cut(s) 3, 60
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 690
Eco47III AGCGCT 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 587
Eco91I GGTNACC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 4 cut(s) 359, 419, 557, 649
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 629
FatI CATG 4 cut(s) 355, 415, 553, 645
FauI CCCGC 1 cut(s) 606
Fnu4HI GCNGC 4 cut(s) 78, 393, 696, 701
FokI GGATG 2 cut(s) 596, 644
Fsp4HI GCNGC 4 cut(s) 78, 393, 696, 701
FspBI CTAG 1 cut(s) 125
GlaI GCGC 2 cut(s) 309, 699
GluI GCNGC 4 cut(s) 78, 393, 696, 701
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 3 cut(s) 5, 62, 689
HhaI GCGC 2 cut(s) 310, 700
Hin1II CATG 4 cut(s) 359, 419, 557, 649
Hin6I GCGC 2 cut(s) 308, 698
HinP1I GCGC 2 cut(s) 308, 698
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 3 cut(s) 22, 82, 566
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 2 cut(s) 721, 733
Hpy188I TCNGA 2 cut(s) 495, 606
Hpy188III TCNNGA 2 cut(s) 13, 260
Hpy8I GTNNAC 2 cut(s) 721, 733
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 684
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 6 cut(s) 352, 524, 623, 659, 710, 721
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 598, 695
HpyF3I CTNAG 2 cut(s) 335, 535
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 4 cut(s) 359, 419, 557, 649
HspAI GCGC 2 cut(s) 308, 698
Kzo9I GATC 4 cut(s) 39, 444, 454, 508
LmnI GCTCC 2 cut(s) 223, 430
Lsp1109I GCAGC 3 cut(s) 64, 682, 687
LweI GCATC 1 cut(s) 646
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 208, 269
MalI GATC 4 cut(s) 41, 446, 456, 510
MboI GATC 4 cut(s) 39, 444, 454, 508
MboII GAAGA 3 cut(s) 34, 230, 419
MfeI CAATTG 1 cut(s) 227
MflI RGATCY 2 cut(s) 39, 444
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 3 cut(s) 165, 227, 503
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 7 cut(s) 28, 214, 297, 421, 556, 574, 684
MseI TTAA 4 cut(s) 152, 321, 377, 748
MspA1I CMGCKG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 678
MunI CAATTG 1 cut(s) 227
Mva1269I GAATGC 2 cut(s) 184, 190
MvaI CCWGG 1 cut(s) 678
MwoI GCNNNNNNNGC 3 cut(s) 55, 598, 695
NdeII GATC 4 cut(s) 39, 444, 454, 508
NlaIII CATG 4 cut(s) 359, 419, 557, 649
PctI GAATGC 2 cut(s) 184, 190
PfeI GAWTC 2 cut(s) 82, 566
PflMI CCANNNNNTGG 1 cut(s) 559
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 4 cut(s) 79, 394, 697, 702
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 676
PspEI GGTNACC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 676
PsuI RGATCY 2 cut(s) 39, 444
PvuII CAGCTG 1 cut(s) 58
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 4 cut(s) 152, 321, 377, 748
SatI GCNGC 4 cut(s) 78, 393, 696, 701
Sau3AI GATC 4 cut(s) 39, 444, 454, 508
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 678
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 1 cut(s) 646
Sse9I AATT 3 cut(s) 165, 227, 503
SsiI CCGC 4 cut(s) 206, 392, 573, 613
SspI AATATT 1 cut(s) 375
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 676
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 1 cut(s) 684
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 20
TasI AATT 3 cut(s) 165, 227, 503
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 2 cut(s) 82, 566
Tru1I TTAA 4 cut(s) 152, 321, 377, 748
Tru9I TTAA 4 cut(s) 152, 321, 377, 748
TscAI CASTG 1 cut(s) 625
TseI GCWGC 3 cut(s) 77, 695, 700
TspDTI ATGAA 3 cut(s) 261, 269, 372
TspRI CASTG 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 559
VneI GTGCAC 1 cut(s) 719
XapI RAATTY 1 cut(s) 503
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.