FvH4_6g06200

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003436
Physical Location & Seq
Forward (+)
3546445 .. 3550366
3922 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06200.t5

Sequence Viewer

Length: 981 bp
ATGGCCGATTTCCAGACCTCGACTCACCGGAGCAAGTGGATCTTCACGCCGGAGCAACTGGTTGAAAAGTACAAGGCTGCTAATCAACAAGCAATAGAAGCATTGGAGAAGTATGGAGTAGCACTGGCGAAAGTAAATGATGATGGTTCATTATCGTACCCCGAAATTGCAAAAGAGAATGCTGACAAGCATTCTCGTCCAAAAGCGGTTACCGTTGAAGAGGAGCAAATGATGCGAGTATTTTATGAAACTAAGCTTCAAGAAGTGTGTAACAACTTCCATTTCCCTCATAAAGTTCAGGCAACAGCTCTCATATATTTCAAAAGGTTTTATCTACGGTGGTCAGTTATGCAACACGAACCAAAAAATATAATATTAACCTGTATATATGCGGCTTGTAAGATAGAAGAAAACCATGTATCTGCAGAGGAGCTTGGTAAGGGGATCTCACAGGATCATCAAATGATACTCAATAATGAGTTGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTGTATGCACCATATCGCTCAATTGAAGGTTTTATCCAAGATATGGAGGATGAACAGCTTCCAATGCTTCAGAATTTGCGTGATGCTGCAAAGATGGATGTTGATAAAATCATGCTCACTGATACACCACTTATGTTCCCTCCTGGGCAGTTGGCCTTGGCTGCATTGCGTAGCGCAAATCAGGTGCACAGAGTTGTTGACTTTGACAGATACCTGGGGAGCATGGTCTCTCGTAAGAGTTCTGCACATACCATTTCAGAGCTAGTTGAATCCCTCAATGCAATTGATTTTTGGGTAAGTAGATACAAATTTCCTTCAGACAAGGAAATCCTGCACATCAATCGCAAACTGAAATCTTGCTGGGGTCAAAGTTCACGTGACGAAAGCAAGAAGCGGGATAAGAAATCAAAGCACAAGTCGAAGAAGAGTTCAAATGAAGCACAACCCGTAAATTTACCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 ko04110 map03022 map03420 map04110
Pfam Domains
Protein Families
Cyclin_C_2 Cyclin_N

Protein Analysis

327

Amino Acids

37.65

Weight (kDa)

7.18

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 47 - 145 1e-11 Cyclin, N-terminal domain
TFIIB PF00382 58 - 119 3.4e-07 Transcription factor TFIIB repeat
Cyclin_C_2 PF16899 150 - 247 5.4e-11 Cyclin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 559
AciI CCGC 3 cut(s) 206, 392, 910
AclWI GGATC 3 cut(s) 47, 452, 462
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 503, 589, 824, 967
AcuI CTGAAG 2 cut(s) 569, 816
AcvI CACGTG 1 cut(s) 893
AfaI GTAC 2 cut(s) 71, 158
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 7 cut(s) 65, 218, 260, 322, 542, 785, 948
AjnI CCWGG 2 cut(s) 658, 729
AluBI AGCT 5 cut(s) 256, 308, 433, 574, 778
AluI AGCT 5 cut(s) 256, 308, 433, 574, 778
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 1 cut(s) 748
Alw44I GTGCAC 1 cut(s) 701
AlwI GGATC 3 cut(s) 47, 452, 462
AoxI GGCC 2 cut(s) 3, 669
ApaLI GTGCAC 1 cut(s) 701
ApeKI GCWGC 3 cut(s) 77, 602, 677
ApoI RAATTY 4 cut(s) 503, 589, 824, 967
ArsI GACNNNNNNTTYG 2 cut(s) 917, 949
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 1 cut(s) 692
AsuHPI GGTGA 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 705
BbrPI CACGTG 1 cut(s) 893
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 64, 589, 664
BccI CCATC 2 cut(s) 137, 604
BcgI CGANNNNNNTGC 2 cut(s) 839, 873
BciT130I CCWGG 2 cut(s) 660, 731
BcoDI GTCTC 1 cut(s) 748
BfaI CTAG 1 cut(s) 779
BfmI CTRYAG 1 cut(s) 423
BisI GCNGC 4 cut(s) 78, 393, 603, 678
BlsI GCNGC 4 cut(s) 79, 394, 604, 679
Bme1390I CCNGG 2 cut(s) 660, 731
BmrFI CCNGG 2 cut(s) 660, 731
BmsI GCATC 2 cut(s) 222, 589
BsaAI YACGTR 1 cut(s) 893
BsaI GGTCTC 1 cut(s) 748
BsaJI CCNNGG 3 cut(s) 659, 672, 730
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 2 cut(s) 63, 129
Bse3DI GCAATG 1 cut(s) 680
BseBI CCWGG 2 cut(s) 660, 731
BseDI CCNNGG 3 cut(s) 659, 672, 730
BseGI GGATG 2 cut(s) 571, 619
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMI GCAATG 1 cut(s) 680
BseNI ACTGG 2 cut(s) 63, 129
BseRI GAGGAG 2 cut(s) 236, 443
BseSI GKGCMC 1 cut(s) 705
BseXI GCAGC 3 cut(s) 64, 589, 664
BseYI CCCAGC 1 cut(s) 876
BsgI GTGCAG 2 cut(s) 744, 833
BshFI GGCC 2 cut(s) 5, 671
BsiHKAI GWGCWC 1 cut(s) 705
BsiSI CCGG 2 cut(s) 28, 50
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 1 cut(s) 748
BsmI GAATGC 2 cut(s) 184, 190
BsnI GGCC 2 cut(s) 5, 671
Bso31I GGTCTC 1 cut(s) 748
Bsp1286I GDGCHC 1 cut(s) 705
Bsp143I GATC 4 cut(s) 39, 444, 454, 508
BspACI CCGC 3 cut(s) 206, 392, 910
BspANI GGCC 2 cut(s) 5, 671
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 3 cut(s) 47, 452, 462
BspTNI GGTCTC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 680
BsrI ACTGG 2 cut(s) 63, 129
BssECI CCNNGG 3 cut(s) 659, 672, 730
BssMI GATC 4 cut(s) 39, 444, 454, 508
BssT1I CCWWGG 1 cut(s) 672
Bst2UI CCWGG 2 cut(s) 660, 731
Bst4CI ACNGT 2 cut(s) 214, 339
Bst6I CTCTTC 2 cut(s) 213, 935
BstAPI GCANNNNNTGC 1 cut(s) 232
BstBAI YACGTR 1 cut(s) 893
BstDEI CTNAG 1 cut(s) 252
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 2 cut(s) 571, 619
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 4 cut(s) 42, 447, 457, 511
BstMAI GTCTC 1 cut(s) 748
BstMBI GATC 4 cut(s) 39, 444, 454, 508
BstMWI GCNNNNNNNGC 4 cut(s) 98, 232, 580, 677
BstNI CCWGG 2 cut(s) 660, 731
BstPI GGTNACC 1 cut(s) 208
BstSCI CCNGG 2 cut(s) 658, 729
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 705
BstV1I GCAGC 3 cut(s) 64, 589, 664
BstX2I RGATCY 2 cut(s) 39, 444
BstYI RGATCY 2 cut(s) 39, 444
BsuRI GGCC 2 cut(s) 5, 671
BtsCI GGATG 2 cut(s) 571, 619
BtsIMutI CAGTG 2 cut(s) 122, 633
CfoI GCGC 1 cut(s) 692
Csp6I GTAC 2 cut(s) 70, 157
CviAII CATG 3 cut(s) 416, 628, 739
CviQI GTAC 2 cut(s) 70, 157
DdeI CTNAG 1 cut(s) 252
DpnI GATC 4 cut(s) 41, 446, 456, 510
DpnII GATC 4 cut(s) 39, 444, 454, 508
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 213, 935
EarI CTCTTC 2 cut(s) 213, 935
Eco130I CCWWGG 1 cut(s) 672
Eco31I GGTCTC 1 cut(s) 748
Eco57I CTGAAG 2 cut(s) 569, 816
Eco72I CACGTG 1 cut(s) 893
Eco91I GGTNACC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 658, 729
EcoT14I CCWWGG 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 3 cut(s) 419, 631, 742
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 3 cut(s) 415, 627, 738
FauI CCCGC 1 cut(s) 903
Fnu4HI GCNGC 4 cut(s) 78, 393, 603, 678
FokI GGATG 2 cut(s) 578, 626
Fsp4HI GCNGC 4 cut(s) 78, 393, 603, 678
FspBI CTAG 1 cut(s) 779
GlaI GCGC 1 cut(s) 691
GluI GCNGC 4 cut(s) 78, 393, 603, 678
GsaI CCCAGC 1 cut(s) 880
HaeIII GGCC 2 cut(s) 5, 671
HapII CCGG 2 cut(s) 28, 50
HhaI GCGC 1 cut(s) 692
Hin1II CATG 3 cut(s) 419, 631, 742
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 22, 785
HpaII CCGG 2 cut(s) 28, 50
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 703, 715, 890
Hpy188I TCNGA 4 cut(s) 495, 588, 775, 835
Hpy188III TCNNGA 2 cut(s) 13, 260
Hpy8I GTNNAC 3 cut(s) 703, 715, 890
HpyAV CCTTC 2 cut(s) 536, 840
HpyCH4III ACNGT 2 cut(s) 214, 339
HpyCH4IV ACGT 1 cut(s) 892
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 232, 580, 677
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 892
Hsp92II CATG 3 cut(s) 419, 631, 742
HspAI GCGC 1 cut(s) 690
Kzo9I GATC 4 cut(s) 39, 444, 454, 508
LmnI GCTCC 5 cut(s) 30, 52, 223, 430, 735
Lsp1109I GCAGC 3 cut(s) 64, 589, 664
LweI GCATC 2 cut(s) 222, 589
MaeI CTAG 1 cut(s) 779
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 3 cut(s) 208, 269, 893
MalI GATC 4 cut(s) 41, 446, 456, 510
MboI GATC 4 cut(s) 39, 444, 454, 508
MboII GAAGA 5 cut(s) 34, 230, 419, 949, 952
MfeI CAATTG 2 cut(s) 537, 798
MflI RGATCY 2 cut(s) 39, 444
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 7 cut(s) 165, 503, 537, 589, 798, 824, 967
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 7 cut(s) 28, 214, 297, 421, 556, 666, 800
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 2 cut(s) 377, 979
MspI CCGG 2 cut(s) 28, 50
MspR9I CCNGG 2 cut(s) 660, 731
MunI CAATTG 2 cut(s) 537, 798
Mva1269I GAATGC 2 cut(s) 184, 190
MvaI CCWGG 2 cut(s) 660, 731
MwoI GCNNNNNNNGC 4 cut(s) 98, 232, 580, 677
NdeII GATC 4 cut(s) 39, 444, 454, 508
NlaIII CATG 3 cut(s) 419, 631, 742
NmuCI GTSAC 1 cut(s) 893
PctI GAATGC 2 cut(s) 184, 190
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 1 cut(s) 785
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 4 cut(s) 79, 394, 604, 679
PleI GAGTC 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 893
PmlI CACGTG 1 cut(s) 893
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 893
Psp6I CCWGG 2 cut(s) 658, 729
PspCI CACGTG 1 cut(s) 893
PspEI GGTNACC 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 876
PspGI CCWGG 2 cut(s) 658, 729
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 2 cut(s) 39, 444
RsaI GTAC 2 cut(s) 71, 158
RsaNI GTAC 2 cut(s) 70, 157
SaqAI TTAA 2 cut(s) 377, 979
SatI GCNGC 4 cut(s) 78, 393, 603, 678
Sau3AI GATC 4 cut(s) 39, 444, 454, 508
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 660, 731
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 2 cut(s) 222, 589
SfcI CTRYAG 1 cut(s) 423
Sse9I AATT 7 cut(s) 165, 503, 537, 589, 798, 824, 967
SsiI CCGC 3 cut(s) 206, 392, 910
SspI AATATT 1 cut(s) 375
SspMI CTAG 1 cut(s) 779
StyD4I CCNGG 2 cut(s) 658, 729
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 2 cut(s) 214, 339
TaiI ACGT 1 cut(s) 895
TaqI TCGA 2 cut(s) 20, 935
TasI AATT 7 cut(s) 165, 503, 537, 589, 798, 824, 967
TatI WGTACW 1 cut(s) 69
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 1 cut(s) 785
Tru1I TTAA 2 cut(s) 377, 979
Tru9I TTAA 2 cut(s) 377, 979
TscAI CASTG 2 cut(s) 129, 640
TseFI GTSAC 1 cut(s) 893
TseI GCWGC 3 cut(s) 77, 602, 677
Tsp45I GTSAC 1 cut(s) 893
TspDTI ATGAA 4 cut(s) 138, 261, 582, 966
TspRI CASTG 2 cut(s) 129, 640
Van91I CCANNNNNTGG 1 cut(s) 559
VneI GTGCAC 1 cut(s) 701
XapI RAATTY 4 cut(s) 503, 589, 824, 967
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.