pycom12g20280

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0003436
Physical Location & Seq
Reverse (-)
21842604 .. 21844249
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g20280.6

Sequence Viewer

Length: 459 bp
ATGGCCGATTTCCAGAGCTCGACTCACCGAGCCAGGTGGATCTTTACTCCCGAAGAACTGGTTGGTAAATACAAGGCTGCTAATCAAAGAGCAGTGCAAACATTGGAGAAGTATGGAGCGACACTAATGGAAGTGGATGTTGATGGAACATTATCATACCCTAAACCCCAAGTAAATGCCGATTCCCGTCCAAAACCCATTAACATTGATGAGGAGCAATTTATGCGAGTATTTTATGAGAACAAACTTCAAGAAGTGTGTACCAACTTTCACTTTCCGCATAAAGTTCAGGCAACGGCTCTCATATATTTCAAGAGGTTTTATTTACACTGGTCGGTGATGCAACATCATCCCAAAAATATAATGTTAACCTGTATATATGCAGCTTGTAAAATAGAGGAAAACCACGTATCAGCGGAGGAGCTTGGTAAGGGGATCGATCCCTGGATCATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 ko04110 map03022 map03420 map04110
Pfam Domains
Protein Families
Cyclin_C_2 Cyclin_N

Protein Analysis

153

Amino Acids

17.75

Weight (kDa)

7.05

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Tree File
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 278, 416
AclWI GGATC 4 cut(s) 47, 434, 443, 455
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 262
AgsI TTSAA 2 cut(s) 251, 313
AjnI CCWGG 2 cut(s) 32, 443
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 3 cut(s) 18, 386, 424
AluI AGCT 3 cut(s) 18, 386, 424
Alw21I GWGCWC 1 cut(s) 20
AlwI GGATC 4 cut(s) 47, 434, 443, 455
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 77, 383
AsuHPI GGTGA 2 cut(s) 17, 349
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 64, 395
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 2 cut(s) 34, 445
BisI GCNGC 2 cut(s) 78, 384
BlsI GCNGC 2 cut(s) 79, 385
Bme1390I CCNGG 2 cut(s) 34, 445
BmrFI CCNGG 2 cut(s) 34, 445
BmsI GCATC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 7, 39
Bsa29I ATCGAT 1 cut(s) 438
BsaAI YACGTR 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 63, 335
BseBI CCWGG 2 cut(s) 34, 445
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 2 cut(s) 142, 349
BseNI ACTGG 2 cut(s) 63, 335
BseRI GAGGAG 2 cut(s) 227, 434
BseXI GCAGC 2 cut(s) 64, 395
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 20
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 4 cut(s) 39, 435, 439, 447
BspACI CCGC 2 cut(s) 278, 416
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 438
BspPI GGATC 4 cut(s) 47, 434, 443, 455
BsrI ACTGG 2 cut(s) 63, 335
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 4 cut(s) 39, 435, 439, 447
Bst2UI CCWGG 2 cut(s) 34, 445
BstAPI GCANNNNNTGC 1 cut(s) 223
BstBAI YACGTR 1 cut(s) 409
BstF5I GGATG 2 cut(s) 142, 349
BstKTI GATC 4 cut(s) 42, 438, 442, 450
BstMBI GATC 4 cut(s) 39, 435, 439, 447
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 2 cut(s) 34, 445
BstSCI CCNGG 2 cut(s) 32, 443
BstV1I GCAGC 2 cut(s) 64, 395
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 438
BtsCI GGATG 2 cut(s) 142, 349
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 328
ClaI ATCGAT 1 cut(s) 438
Csp6I GTAC 1 cut(s) 261
CviJI RGCY 7 cut(s) 5, 18, 32, 77, 299, 386, 424
CviKI_1 RGCY 7 cut(s) 5, 18, 32, 77, 299, 386, 424
CviQI GTAC 1 cut(s) 261
DpnI GATC 4 cut(s) 41, 437, 441, 449
DpnII GATC 4 cut(s) 39, 435, 439, 447
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 32, 443
EcoT38I GRGCYC 1 cut(s) 20
Fnu4HI GCNGC 2 cut(s) 78, 384
FokI GGATG 2 cut(s) 149, 336
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 78, 384
GluI GCNGC 2 cut(s) 78, 384
HaeIII GGCC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HinfI GANTC 2 cut(s) 22, 182
HpaI GTTAAC 1 cut(s) 369
HphI GGTGA 2 cut(s) 17, 349
Hpy166II GTNNAC 2 cut(s) 261, 369
Hpy188III TCNNGA 4 cut(s) 13, 50, 251, 313
Hpy8I GTNNAC 2 cut(s) 261, 369
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 3 cut(s) 97, 343, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 408
KspAI GTTAAC 1 cut(s) 369
Kzo9I GATC 4 cut(s) 39, 435, 439, 447
LmnI GCTCC 3 cut(s) 116, 214, 421
LpnPI CCDG 8 cut(s) 19, 26, 44, 46, 275, 316, 385, 430
Lsp1109I GCAGC 2 cut(s) 64, 395
LweI GCATC 1 cut(s) 330
MaeII ACGT 1 cut(s) 408
MalI GATC 4 cut(s) 41, 437, 441, 449
MboI GATC 4 cut(s) 39, 435, 439, 447
MboII GAAGA 1 cut(s) 65
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 4 cut(s) 205, 309, 391, 412
MseI TTAA 2 cut(s) 201, 368
MspA1I CMGCKG 1 cut(s) 416
MspR9I CCNGG 2 cut(s) 34, 445
MvaI CCWGG 2 cut(s) 34, 445
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 4 cut(s) 39, 435, 439, 447
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 2 cut(s) 79, 385
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 32, 443
PspGI CCWGG 2 cut(s) 32, 443
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SacI GAGCTC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 201, 368
SatI GCNGC 2 cut(s) 78, 384
Sau3AI GATC 4 cut(s) 39, 435, 439, 447
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 34, 445
SduI GDGCHC 1 cut(s) 20
SetI ASST 7 cut(s) 20, 38, 320, 374, 388, 411, 426
SfaNI GCATC 1 cut(s) 330
Sse9I AATT 1 cut(s) 218
SsiI CCGC 2 cut(s) 278, 416
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 32, 443
TaiI ACGT 1 cut(s) 411
TaqI TCGA 2 cut(s) 20, 438
TasI AATT 1 cut(s) 218
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 201, 368
Tru9I TTAA 2 cut(s) 201, 368
TscAI CASTG 2 cut(s) 99, 335
TseI GCWGC 2 cut(s) 77, 383
TspRI CASTG 2 cut(s) 99, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.