Rh7BG376000

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003436
Physical Location & Seq
Reverse (-)
40480959 .. 40481823
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG376000.1

Sequence Viewer

Length: 585 bp
ATGGCCAATTTCCAGACCTCGACTCACCGAACCAAGTGGATCTTGACGCCTGAACAACTGGTAGAGAAATACAAGGCTGCTAATCAAAGAGCAATAGAAACATTGGACAAGTATGGAGTAGCACTAGCGAAGGTAAACGATGATGGGTCTTTATCGTACCCCGAAATTCCAAAAGAGAATTCTCGTCCGAAAGCACTCACCATTGAAGAGGAGCAATTGATGCGAGTATATTATGAAGCTAAGCTTCAAGAAGGCTTATCCAAGATATGGAGGAATCCGGCCAGCTGCGGATTTAATGATGATGATCAGGTTCAAAAGCTAAATCACAGTGCACTTATGGAAGTTGACAAGATCATGCTCACAGATGCACCACTTCTGTTCCCTCCTGGACAGTTGGCCTTGGCTGCATTGCGAAGAGGAACTCAGGTGCACCGAGTTGTGGACTTTGACAGATACCTAGGGAGCATGCTCTCTCGTCACGGTTCTGCTGCACATACCATTTCAGAGCTGGTTGAATGCCTTGATGCAATTGATTCTTGGGTGAGGAGATACAAGTTTCCTTCAGACAAGGAAATAGGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0000307 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010118 GO:0010119 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016538 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0072593 GO:0080090 GO:0080134 GO:0098772 GO:0140096 GO:1901407 GO:1901409 GO:1901564 GO:1901700 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990069 GO:1990234 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 ko04110 map03022 map03420 map04110
Pfam Domains
Protein Families
Cyclin_C_2 Cyclin_N

Protein Analysis

194

Amino Acids

22.04

Weight (kDa)

6.22

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C_2 PF16899 100 - 178 2.3e-06 Cyclin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 267
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 2 cut(s) 3, 279
AcsI RAATTY 2 cut(s) 165, 178
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 267, 439
AgsI TTSAA 4 cut(s) 206, 248, 314, 515
AjnI CCWGG 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AluBI AGCT 5 cut(s) 239, 244, 285, 319, 508
AluI AGCT 5 cut(s) 239, 244, 285, 319, 508
Alw21I GWGCWC 2 cut(s) 334, 432
Alw44I GTGCAC 2 cut(s) 330, 428
AlwI GGATC 1 cut(s) 47
AoxI GGCC 3 cut(s) 3, 279, 396
ApaLI GTGCAC 2 cut(s) 330, 428
ApeKI GCWGC 4 cut(s) 77, 285, 404, 488
ApoI RAATTY 2 cut(s) 165, 178
AspA2I CCTAGG 1 cut(s) 457
AsuHPI GGTGA 3 cut(s) 17, 190, 553
AvrII CCTAGG 1 cut(s) 457
BaeGI GKGCMC 2 cut(s) 334, 432
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 2 cut(s) 334, 432
BbvI GCAGC 4 cut(s) 64, 272, 391, 475
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 387
BclI TGATCA 1 cut(s) 304
BfaI CTAG 2 cut(s) 125, 458
BisI GCNGC 4 cut(s) 78, 286, 405, 489
BlnI CCTAGG 1 cut(s) 457
BlpI GCTNAGC 1 cut(s) 240
BlsI GCNGC 4 cut(s) 79, 287, 406, 490
Bme1390I CCNGG 1 cut(s) 387
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 3 cut(s) 210, 355, 514
Bpu1102I GCTNAGC 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 399, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 439
Bse1I ACTGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 407
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 399, 457
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 267, 439
BseMI GCAATG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 2 cut(s) 224, 559
BseSI GKGCMC 2 cut(s) 334, 432
BseXI GCAGC 4 cut(s) 64, 272, 391, 475
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 3 cut(s) 5, 281, 398
BsiHKAI GWGCWC 2 cut(s) 334, 432
BsiSI CCGG 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 267, 439
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 3 cut(s) 5, 281, 398
Bsp1286I GDGCHC 2 cut(s) 334, 432
Bsp143I GATC 3 cut(s) 39, 304, 351
Bsp1720I GCTNAGC 1 cut(s) 240
BspACI CCGC 1 cut(s) 288
BspANI GGCC 3 cut(s) 5, 281, 398
BspCNI CTCAG 1 cut(s) 436
BspPI GGATC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 407
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 399, 457
BssMI GATC 3 cut(s) 39, 304, 351
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 399, 457
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 3 cut(s) 329, 393, 482
Bst6I CTCTTC 2 cut(s) 201, 409
BstACI GRCGYC 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 283, 467
BstDEI CTNAG 2 cut(s) 240, 423
BstKTI GATC 3 cut(s) 42, 307, 354
BstMBI GATC 3 cut(s) 39, 304, 351
BstMWI GCNNNNNNNGC 2 cut(s) 220, 404
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 385
BstSLI GKGCMC 2 cut(s) 334, 432
BstV1I GCAGC 4 cut(s) 64, 272, 391, 475
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 3 cut(s) 5, 281, 398
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 283, 467
CseI GACGC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 157
CviAII CATG 2 cut(s) 355, 466
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 240, 423
DpnI GATC 3 cut(s) 41, 306, 353
DpnII GATC 3 cut(s) 39, 304, 351
EaeI YGGCCR 2 cut(s) 3, 279
Eam1104I CTCTTC 2 cut(s) 201, 409
EarI CTCTTC 2 cut(s) 201, 409
Eco130I CCWWGG 2 cut(s) 399, 457
Eco57I CTGAAG 1 cut(s) 546
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 2 cut(s) 399, 457
ErhI CCWWGG 2 cut(s) 399, 457
FaeI CATG 2 cut(s) 358, 469
FaiI YATR 8 cut(s) 114, 229, 234, 268, 338, 356, 467, 495
FalI AAGNNNNNCTT 4 cut(s) 26, 58, 228, 260
FatI CATG 2 cut(s) 354, 465
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 4 cut(s) 78, 286, 405, 489
Fsp4HI GCNGC 4 cut(s) 78, 286, 405, 489
FspBI CTAG 2 cut(s) 125, 458
GluI GCNGC 4 cut(s) 78, 286, 405, 489
HaeIII GGCC 3 cut(s) 5, 281, 398
HapII CCGG 1 cut(s) 278
HgaI GACGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 2 cut(s) 358, 469
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 3 cut(s) 22, 274, 533
HpaII CCGG 1 cut(s) 278
HphI GGTGA 3 cut(s) 17, 190, 553
Hpy166II GTNNAC 5 cut(s) 136, 332, 346, 430, 442
Hpy188I TCNGA 3 cut(s) 189, 505, 565
Hpy188III TCNNGA 3 cut(s) 13, 43, 248
Hpy8I GTNNAC 5 cut(s) 136, 332, 346, 430, 442
HpyAV CCTTC 3 cut(s) 124, 245, 570
HpyCH4III ACNGT 3 cut(s) 329, 393, 482
HpyCH4V TGCA 6 cut(s) 332, 368, 407, 430, 491, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 404
HpyF3I CTNAG 2 cut(s) 240, 423
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 2 cut(s) 358, 469
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 39, 304, 351
LmnI GCTCC 2 cut(s) 211, 462
Lsp1109I GCAGC 4 cut(s) 64, 272, 391, 475
LweI GCATC 3 cut(s) 210, 355, 514
MaeI CTAG 2 cut(s) 125, 458
MaeIII GTNAC 1 cut(s) 476
MalI GATC 3 cut(s) 41, 306, 353
MboI GATC 3 cut(s) 39, 304, 351
MboII GAAGA 2 cut(s) 218, 426
MfeI CAATTG 2 cut(s) 215, 528
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 2 cut(s) 334, 432
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 7, 165, 178, 215, 528
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 6 cut(s) 28, 202, 264, 393, 410, 537
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 387
MunI CAATTG 2 cut(s) 215, 528
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 220, 404
NdeII GATC 3 cut(s) 39, 304, 351
NlaIII CATG 2 cut(s) 358, 469
NmuCI GTSAC 1 cut(s) 476
NspI RCATGY 1 cut(s) 469
PaeI GCATGC 1 cut(s) 469
PctI GAATGC 1 cut(s) 521
PfeI GAWTC 2 cut(s) 274, 533
PflMI CCANNNNNTGG 1 cut(s) 267
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 4 cut(s) 79, 287, 406, 490
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PsuI RGATCY 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 285
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 4 cut(s) 78, 286, 405, 489
Sau3AI GATC 3 cut(s) 39, 304, 351
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 2 cut(s) 334, 432
SfaNI GCATC 3 cut(s) 210, 355, 514
SphI GCATGC 1 cut(s) 469
Sse9I AATT 5 cut(s) 7, 165, 178, 215, 528
SsiI CCGC 1 cut(s) 288
SspMI CTAG 2 cut(s) 125, 458
StyD4I CCNGG 1 cut(s) 385
StyI CCWWGG 2 cut(s) 399, 457
TaaI ACNGT 3 cut(s) 329, 393, 482
TaqI TCGA 1 cut(s) 20
TasI AATT 5 cut(s) 7, 165, 178, 215, 528
TfiI GAWTC 2 cut(s) 274, 533
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 4 cut(s) 77, 285, 404, 488
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 1 cut(s) 267
VneI GTGCAC 2 cut(s) 330, 428
XapI RAATTY 2 cut(s) 165, 178
XceI RCATGY 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmaJI CCTAGG 1 cut(s) 457
XspI CTAG 2 cut(s) 125, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.