Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001186

Physical Location & Seq

Genomic Coordinates Reverse (-)

10089995 .. 10092721

Gene Structure 2727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28080.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTCCTGAAGTTTATAAAGAAGAATATAACCAATTAGTCGATATTTACTCGTTCGGTATGTGTGTTTTGGAAATGGTAACGTTTGATTACCCGTATAGTGAGTGTTCTCACCCTGCTCAGATTTACAAGAGAGTTATATCGGGCAAGAAACCAGATGGATTAGACAAAGTGAAGGATCCAGAGGTTAGAGGGTTTATCGAGAAGTGTTTGGCCACAGTGTCCCTTAGACTCTCTGCTTGTGAACTACTAGATGACCATTTTCTTTGTATCGATGAATCGGATATGAGACGCGTAGAGAGCGAAAAGGGCTTGATAGATGAAGCAGGGACTCCTCTTAGACATTCTTATCATATACCTCACTACTCAAACGGTTACTACAGCCTCTATAATCAAAACCAATGGGATTACAATGGAGATGAGACAGTGGAGTCACACGAGATAGATCTCTTGGAGTTTCAAAATGATGATGATGAAGAAGAAGAAGATAAGAGGTTTGGTAGTGTAGATATAAGCATTAAAGGGAAGAGAAGAGACAATGGAGATGGACTATTTCTGCGACTCAAAACCGTCAACAAGGAAGGTTGTGTGAGAAACATATACTTCCCGTTCGACATCGAGACTGACACAGCAATAAGCGTTGCAAGAGAGATGGTGGAAGAGCTGGAGATGGATGACCGTGATGTCACAAAGATAGCTAATATGATCGATGGAGAGATTGCTTCTTTGGTTCCTAATTGGAGTATCTTCTGCAGCTCCGAATCGAACCGTTCCTCGGTGGGTTCAGTCATGGATTTCAATGAGATGCAGTGTGGAAGAGACGGGTGTGAAGAGAAGCATGGACGGTTTGAGGAGATTACGTTTGAGATAACAGTAAACGACTCTGACGAAGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

299

Amino Acids

34.42

Weight (kDa)

4.4

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 195	1.9e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	10 - 179	9.7e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04910 AT3G04910 AT3G04910 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080
fragaria_vesca	FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_6g03470 FvH4_6g03470
malus_domestica	MD04G1220500.v1.1 MD12G1236900.v1.1 MD13G1192500.v1.1 MD16G1193000.v1.1
prunus_persica	Prupe.1G013100_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1
pyrus_communis	pycom04g19520 pycom12g21800 pycom13g16490 pycom16g16300
rosa_chinensis	RchiOBHm_Chr3g0451971 RchiOBHm_Chr4g0416321
rosa_laevigata	RLG00000007995 RLG00000025633
rosa_multiflora	Rmu_sc0001145.1_g000025 Rmu_sc0006436.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436150 Rroxscaffold_5G00360170 Rroxscaffold_6G00429140
rosa_rugosa	Rorug02G0637900 Rorug04G0140700 Rorug04G0140700
rosa_samantha	Rh3AG039500 Rh3BG040900 Rh3CG039400 Rh3DG040100 Rh4AG202900 Rh4BG200300 Rh4CG214500 Rh4DG200200
rosa_wichuraiana	Rw3G002970 Rw4G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AasI	GACNNNNNNGTC	2 cut(s)	430, 683
AccII	CGCG	1 cut(s)	294
AclI	AACGTT	1 cut(s)	83
AclWI	GGATC	2 cut(s)	173, 186
AcoI	YGGCCR	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	775
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	461, 799
AluBI	AGCT	3 cut(s)	664, 698, 756
AluI	AGCT	3 cut(s)	664, 698, 756
Alw26I	GTCTC	5 cut(s)	283, 416, 528, 614, 813
AlwI	GGATC	2 cut(s)	173, 186
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	753
AsuHPI	GGTGA	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	765
BccI	CCATC	5 cut(s)	152, 539, 646, 664, 704
BcoDI	GTCTC	5 cut(s)	283, 416, 528, 614, 813
BfaI	CTAG	2 cut(s)	251, 898
BfmI	CTRYAG	2 cut(s)	379, 751
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	1 cut(s)	754
BlsI	GCNGC	1 cut(s)	755
BmiI	GGNNCC	3 cut(s)	6, 180, 732
BmsI	GCATC	1 cut(s)	795
BpmI	CTGGAG	1 cut(s)	686
Bsa29I	ATCGAT	2 cut(s)	273, 708
BsaJI	CCNNGG	1 cut(s)	774
BsaXI	ACNNNNNCTCC	2 cut(s)	845, 875
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
BseCI	ATCGAT	2 cut(s)	273, 708
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMII	CTCAG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	324, 866
BseXI	GCAGC	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	215
BshVI	ATCGAT	2 cut(s)	273, 708
BslFI	GGGAC	2 cut(s)	208, 343
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	5 cut(s)	283, 416, 528, 614, 813
BsmBI	CGTCTC	2 cut(s)	283, 813
BsmFI	GGGAC	2 cut(s)	208, 343
BsnI	GGCC	1 cut(s)	215
Bsp143I	GATC	3 cut(s)	178, 445, 705
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	133
BspDI	ATCGAT	2 cut(s)	273, 708
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	6, 180, 732
BspMAI	CTGCAG	1 cut(s)	755
BspPI	GGATC	2 cut(s)	173, 186
BspQI	GCTCTTC	1 cut(s)	654
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	3 cut(s)	178, 445, 705
BssSI	CACGAG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	437
Bst4CI	ACNGT	8 cut(s)	220, 374, 427, 571, 680, 770, 846, 874
Bst6I	CTCTTC	5 cut(s)	521, 526, 654, 811, 825
BstDEI	CTNAG	3 cut(s)	120, 227, 338
BstF5I	GGATG	1 cut(s)	679
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	3 cut(s)	181, 448, 708
BstMAI	GTCTC	5 cut(s)	283, 416, 528, 614, 813
BstMBI	GATC	3 cut(s)	178, 445, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 309
BstSFI	CTRYAG	2 cut(s)	379, 751
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	765
BstX2I	RGATCY	2 cut(s)	178, 445
BstYI	RGATCY	2 cut(s)	178, 445
Bsu15I	ATCGAT	2 cut(s)	273, 708
BsuRI	GGCC	1 cut(s)	215
BsuTUI	ATCGAT	2 cut(s)	273, 708
BtsCI	GGATG	1 cut(s)	679
BtsI	GCAGTG	1 cut(s)	815
BtsIMutI	CAGTG	3 cut(s)	225, 432, 815
ClaI	ATCGAT	2 cut(s)	273, 708
CseI	GACGC	1 cut(s)	300
CviAII	CATG	2 cut(s)	790, 839
CviJI	RGCY	7 cut(s)	5, 215, 312, 384, 664, 698, 756
CviKI_1	RGCY	7 cut(s)	5, 215, 312, 384, 664, 698, 756
DdeI	CTNAG	3 cut(s)	120, 227, 338
DpnI	GATC	3 cut(s)	180, 447, 707
DpnII	GATC	3 cut(s)	178, 445, 705
DrdI	GACNNNNNNGTC	2 cut(s)	430, 683
DseDI	GACNNNNNNGTC	2 cut(s)	430, 683
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	5 cut(s)	521, 526, 654, 811, 825
EarI	CTCTTC	5 cut(s)	521, 526, 654, 811, 825
Eco57I	CTGAAG	1 cut(s)	30
Esp3I	CGTCTC	2 cut(s)	283, 813
FaeI	CATG	2 cut(s)	793, 842
FaqI	GGGAC	2 cut(s)	208, 343
FatI	CATG	2 cut(s)	789, 838
Fnu4HI	GCNGC	1 cut(s)	754
FokI	GGATG	1 cut(s)	686
Fsp4HI	GCNGC	1 cut(s)	754
FspBI	CTAG	2 cut(s)	251, 898
GluI	GCNGC	1 cut(s)	754
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	1 cut(s)	215
HgaI	GACGC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	793, 842
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	7 cut(s)	231, 278, 331, 431, 561, 761, 881
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	3 cut(s)	245, 574, 877
Hpy188I	TCNGA	4 cut(s)	123, 283, 760, 886
Hpy188III	TCNNGA	4 cut(s)	8, 182, 202, 619
Hpy8I	GTNNAC	3 cut(s)	245, 574, 877
HpyAV	CCTTC	2 cut(s)	169, 575
HpyCH4III	ACNGT	8 cut(s)	220, 374, 427, 571, 680, 770, 846, 874
HpyCH4IV	ACGT	2 cut(s)	83, 860
HpyCH4V	TGCA	3 cut(s)	644, 753, 808
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 309
HpyF3I	CTNAG	3 cut(s)	120, 227, 338
HpySE526I	ACGT	2 cut(s)	83, 860
Hsp92II	CATG	2 cut(s)	793, 842
Kzo9I	GATC	3 cut(s)	178, 445, 705
LguI	GCTCTTC	1 cut(s)	654
LmnI	GCTCC	2 cut(s)	10, 761
LpnPI	CCDG	6 cut(s)	21, 129, 168, 195, 312, 650
Lsp1109I	GCAGC	1 cut(s)	765
LweI	GCATC	1 cut(s)	795
MaeI	CTAG	2 cut(s)	251, 898
MaeII	ACGT	2 cut(s)	83, 860
MaeIII	GTNAC	4 cut(s)	79, 374, 432, 685
MalI	GATC	3 cut(s)	180, 447, 707
MboI	GATC	3 cut(s)	178, 445, 705
MflI	RGATCY	2 cut(s)	178, 445
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	35, 736
MluI	ACGCGT	1 cut(s)	292
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	5 cut(s)	225, 325, 440, 555, 875
MnlI	CCTC	8 cut(s)	178, 185, 345, 369, 395, 486, 784, 844
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	215
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	300, 309
NdeII	GATC	3 cut(s)	178, 445, 705
NlaIII	CATG	2 cut(s)	793, 842
NlaIV	GGNNCC	3 cut(s)	6, 180, 732
NmuCI	GTSAC	2 cut(s)	432, 685
PciSI	GCTCTTC	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	278, 761
PkrI	GCNGC	1 cut(s)	755
PleI	GAGTC	5 cut(s)	225, 325, 439, 555, 875
PpsI	GAGTC	5 cut(s)	225, 325, 439, 555, 875
PsiI	TTATAA	1 cut(s)	18
Psp1406I	AACGTT	1 cut(s)	83
PspN4I	GGNNCC	3 cut(s)	6, 180, 732
PstI	CTGCAG	1 cut(s)	755
PsuI	RGATCY	2 cut(s)	178, 445
SapI	GCTCTTC	1 cut(s)	654
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	1 cut(s)	754
Sau3AI	GATC	3 cut(s)	178, 445, 705
SchI	GAGTC	5 cut(s)	225, 325, 440, 555, 875
SetI	ASST	9 cut(s)	86, 189, 361, 497, 586, 666, 700, 758, 863
SfaNI	GCATC	1 cut(s)	795
SfcI	CTRYAG	2 cut(s)	379, 751
Sse9I	AATT	2 cut(s)	35, 736
SspMI	CTAG	2 cut(s)	251, 898
TaaI	ACNGT	8 cut(s)	220, 374, 427, 571, 680, 770, 846, 874
TaiI	ACGT	2 cut(s)	86, 863
TaqI	TCGA	7 cut(s)	42, 201, 273, 612, 618, 708, 764
TasI	AATT	2 cut(s)	35, 736
TfiI	GAWTC	2 cut(s)	278, 761
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	3 cut(s)	225, 432, 815
TseFI	GTSAC	2 cut(s)	432, 685
TseI	GCWGC	1 cut(s)	753
Tsp45I	GTSAC	2 cut(s)	432, 685
TspDTI	ATGAA	3 cut(s)	291, 336, 489
TspRI	CASTG	3 cut(s)	225, 432, 815
XspI	CTAG	2 cut(s)	251, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.