Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001186

Physical Location & Seq

Genomic Coordinates Reverse (-)

23223170 .. 23225826

Gene Structure 2657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0140700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAAACTAATTGCTCCTTGTTCTCTTTCTTCTTATCCTTCATCACCTCTCTCAAATATTTCTTACTTTACCTCGATTTTTTCATGCAAGATCCAAAGAACTCACAAGCAGCAAGGTATGCCAAAGAAGCCTTGGTATCAAAGAGCAATAGAGATGGGCTCTCTATGGAGATCAAGCATTAGTAGTCCCAAGCTTCCCACAGATCAAGTTCCAGCACCAAATGCCACAACATTGTGGAAAACCATTACCAAATCCACAAACACCAACATTCCTAATTCTTCGAATTCCAATAGACACAAGCTGAGAAAATGTGCCTCCTTAAAGGTTGCGACTTCGTTTACTAGGGTTTGTCTTTGTGCACCCATATCTTCCTACAATGAGGTTTTTAGGGCTGAGCTCCCACCAAGAAGAAGCAATAGTTACCCGAGATCGAAGCCATTGGGGATGACGACACAAGATCAAAGAAGCATTACCACTATGAGCGCGAGGCTTAGCACTTCCGAGAGAAGAGTTTTTCGTGGGAAATCTCTGACGGAAGACGTTTTGATGAGGAGGTTCGTTATGGAAGAAGAAGCAATGATGCACGTTAGAAGGAGAAATCAAATGGAAGTAATAAGAAGAAAAAGTATAATGAGGAGGAAGAATCTTGGGCCTAGTCGTCTTAGTAGAATGGTTATGGCTGGAGAGGAGGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

232

Amino Acids

26.6

Weight (kDa)

10.94

Isoelectric Point (pI)

77.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04910 AT3G04910 AT3G04910 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080
fragaria_vesca	FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_6g03470 FvH4_6g03470
malus_domestica	MD04G1220500.v1.1 MD12G1236900.v1.1 MD13G1192500.v1.1 MD16G1193000.v1.1
prunus_persica	Prupe.1G013100_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1
pyrus_communis	pycom04g19520 pycom12g21800 pycom13g16490 pycom16g16300
rosa_chinensis	RchiOBHm_Chr3g0451971 RchiOBHm_Chr4g0416321
rosa_laevigata	RLG00000007995 RLG00000025633
rosa_multiflora	Rmu_sc0001145.1_g000025 Rmu_sc0006436.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436150 Rroxscaffold_5G00360170 Rroxscaffold_6G00429140
rosa_rugosa	Rorug02G0637900 Rorug04G0140700 Rorug04G0140700
rosa_samantha	Rh3AG039500 Rh3BG040900 Rh3CG039400 Rh3DG040100 Rh4AG202900 Rh4BG200300 Rh4CG214500 Rh4DG200200
rosa_wichuraiana	Rw3G002970 Rw4G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	485
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	283
AluBI	AGCT	3 cut(s)	193, 301, 397
AluI	AGCT	3 cut(s)	193, 301, 397
Alw21I	GWGCWC	2 cut(s)	361, 399
Alw44I	GTGCAC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	424
AoxI	GGCC	1 cut(s)	650
ApaLI	GTGCAC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	1 cut(s)	36
AsuII	TTCGAA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	161, 399
BbsI	GAAGAC	1 cut(s)	543
Bbv12I	GWGCWC	2 cut(s)	361, 399
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	342, 654
BisI	GCNGC	1 cut(s)	110
BlpI	GCTNAGC	2 cut(s)	393, 491
BlsI	GCNGC	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	650
BmsI	GCATC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	543
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu1102I	GCTNAGC	2 cut(s)	393, 491
Bpu14I	TTCGAA	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	582
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	450
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	293, 384
BseRI	GAGGAG	2 cut(s)	565, 649
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	485
BshFI	GGCC	1 cut(s)	652
BsiHKAI	GWGCWC	2 cut(s)	361, 399
BsiHKCI	CYCGRG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	652
BsoBI	CYCGRG	1 cut(s)	424
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	3 cut(s)	161, 361, 399
Bsp143I	GATC	5 cut(s)	90, 170, 202, 428, 457
Bsp1720I	GCTNAGC	2 cut(s)	393, 491
BspANI	GGCC	1 cut(s)	652
BspCNI	CTCAG	2 cut(s)	294, 385
BspFNI	CGCG	1 cut(s)	485
BspPI	GGATC	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	582
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	5 cut(s)	90, 170, 202, 428, 457
BssT1I	CCWWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	502
BstAPI	GCANNNNNTGC	2 cut(s)	118, 221
BstBI	TTCGAA	1 cut(s)	281
BstDEI	CTNAG	4 cut(s)	302, 393, 491, 662
BstF5I	GGATG	1 cut(s)	450
BstFNI	CGCG	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	5 cut(s)	93, 173, 205, 431, 460
BstMBI	GATC	5 cut(s)	90, 170, 202, 428, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 127, 221
BstSLI	GKGCMC	1 cut(s)	361
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	652
BtsCI	GGATG	1 cut(s)	450
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	650
CviAII	CATG	1 cut(s)	84
DdeI	CTNAG	4 cut(s)	302, 393, 491, 662
DpnI	GATC	5 cut(s)	92, 172, 204, 430, 459
DpnII	GATC	5 cut(s)	90, 170, 202, 428, 457
Eam1104I	CTCTTC	1 cut(s)	502
EarI	CTCTTC	1 cut(s)	502
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	2 cut(s)	161, 399
Eco53kI	GAGCTC	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	2 cut(s)	161, 399
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	1 cut(s)	87
FaiI	YATR	8 cut(s)	85, 119, 166, 365, 479, 563, 629, 677
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	1 cut(s)	83
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	457
FriOI	GRGCYC	2 cut(s)	161, 399
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	2 cut(s)	342, 654
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	652
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	1 cut(s)	643
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	2 cut(s)	339, 359
Hpy188I	TCNGA	2 cut(s)	502, 531
Hpy8I	GTNNAC	2 cut(s)	339, 359
HpyAV	CCTTC	2 cut(s)	48, 585
HpyCH4IV	ACGT	2 cut(s)	540, 585
HpyCH4V	TGCA	3 cut(s)	87, 359, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 127, 221
HpyF3I	CTNAG	4 cut(s)	302, 393, 491, 662
HpySE526I	ACGT	2 cut(s)	540, 585
Hsp92II	CATG	1 cut(s)	87
HspAI	GCGC	1 cut(s)	483
Kzo9I	GATC	5 cut(s)	90, 170, 202, 428, 457
LmnI	GCTCC	2 cut(s)	19, 402
LpnPI	CCDG	2 cut(s)	225, 666
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	2 cut(s)	342, 654
MaeII	ACGT	2 cut(s)	540, 585
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	5 cut(s)	92, 172, 204, 430, 459
MboI	GATC	5 cut(s)	90, 170, 202, 428, 457
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	3 cut(s)	161, 361, 399
MluCI	AATT	4 cut(s)	9, 274, 283, 694
MseI	TTAA	1 cut(s)	320
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	3 cut(s)	118, 127, 221
NdeII	GATC	5 cut(s)	90, 170, 202, 428, 457
NlaIII	CATG	1 cut(s)	87
NspV	TTCGAA	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	643
PkrI	GCNGC	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	5 cut(s)	90, 170, 202, 428, 457
Sau96I	GGNCC	1 cut(s)	650
SduI	GDGCHC	3 cut(s)	161, 361, 399
SfaNI	GCATC	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	281
Sse9I	AATT	4 cut(s)	9, 274, 283, 694
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	2 cut(s)	342, 654
SstI	GAGCTC	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	131
TaiI	ACGT	2 cut(s)	543, 588
TaqI	TCGA	3 cut(s)	74, 281, 431
TasI	AATT	4 cut(s)	9, 274, 283, 694
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	17, 30, 72
TspGWI	ACGGA	1 cut(s)	548
VneI	GTGCAC	1 cut(s)	357
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XspI	CTAG	2 cut(s)	342, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.