Rroxscaffold_6G00429140

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
49472201 .. 49475827
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429140.1

Sequence Viewer

Length: 1626 bp
ATGGCACCAGAAGTGTATGAAGAGGCATATAATGAGTTAGTTGACATATATTCGTTTGGGATGTGCGTTTTGGAAATGGTGACTTTTGAATATCCTTATAGTGAATGCACTCATCCTGCTCAGATCTACAAGAAAGTTGTATCAGGGAAAAAACCAGATGCTTTGTACAAAGTGAAAGATCCGGAAGTAAGGCAGTTTGTTGAGAAATGCTTGGCAACTGCGTCTGTGAGGCACTCCGCAATTGAGCTTTTGAACGATGATTTTCTCCGAATAGATGAAGGTGAATATGATTTGAGACCAGTGAATTACGGCAGGCAGCTTGATGACATTGGTCCTCTTGTAAGGCAGCCTCTTTACGAGGTTCATCAAAGCAACAATTTGTTTAGTAATGGATACTCGAACGATTATGGTTTTGATTCCCAAAACGAATTGGGGTATCATCCTTTTGAGGTTGAATCAAGTGGAATAGAACTCTTTGAGCATCATGATGATGATGATGAACATGGTGAAGATGTGGACATAAGTATTAGAGGGAAGAGAAAAGAAGAAGATGGTAGCATCATTCTGAGACTTAGAATTGCAGATAAAGAAGGACATATTAGGAAGATTTATTTCCCATTTGACATTGAGACGGACACAGCACTAAGTGTTGCAACTGAAATGGTGGCAGAGTTGGATATCACTGATCATGATGTAACCGAAATAGCAGATATGATTGATGGGGAAATTGCTTCCTTGGTACCTGATTGGCAGTCGGGGCCAGGAATAGTGGAATCACCGCATTTTTCTAATCAAAAATTTTGTCACAATTGTGTATCCAACCACACCTCTAGTGGTTCCTTCATGGAGTTTCTGTCTAATAACCCAGGGGCTACTCAAGATTGTACGCATGGATGTGCTTCAATGCATGGTCGTTTTGAGGAGATTACATATCAAGAAGATGAGTCAAAGCATCGTGCGACAGAGGATATACCAAATGAATCAAGCCAATCAGACTGCCTACATTACCAAGAAATCTGGGGACAGCATGAGAGTCGTGAGCTTAGTTCAGTGGGCTCTGGACAGAGCCATTCAGACGAAGAATATGAAAAAATGAATCAGTTAGTCACAGTCATGCAGGATCTTAAATTGGACAACACCATTGCTTCCAATGCAAGAAATTCTCTCCGGGATTTATCCGATTCACATCCCTTTTCCACTGTCCCTTCGATATACTGTGATCTCTCAGACAATTCTGAGCATGAAATTCAGAAGGAATTGAGGTGGCTCAAAGCAAAGCACCAGATTGAGTTGAGGGAGCTTAGAGATCAGCAGTTAGGACTTGTCTCAAAATCTTCAAACAAAGAACATGCGAGAGACAATGGGAGCTTATCATGTCTGGTATCAAACACCATGAAAGGGAACAACTATGACAGAAATTCAACTTTTAATTGCCTTCCTAGTCCTAATAAGAGCTGCCCCAGTTCGGAAACCCAAAGGGTCCGAAAATGTGAGGCGATATTGGAGTGTCCAGATGCAGAAGAGGATGATGTGGGTACTGCCAACAGTTTCTACGCCCAATCACAGCTGCTTCCACACTCTCTTTGCAGGACAGTTTCTCTCCCCGTTGATGCTGTTGATTCGTAA

Protein Analysis

541

Amino Acids

61.18

Weight (kDa)

4.65

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 88 6e-06 Protein kinase domain
OSR1_C PF12202 188 - 243 2.4e-06 Oxidative-stress-responsive kinase 1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 739
AccB1I GGYRCC 2 cut(s) 4, 739
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 2 cut(s) 237, 779
AclWI GGATC 2 cut(s) 173, 1128
AcsI RAATTY 4 cut(s) 797, 1159, 1245, 1417
AdeI CACNNNGTG 1 cut(s) 647
AfaI GTAC 4 cut(s) 167, 741, 886, 1537
AfiI CCNNNNNNNGG 2 cut(s) 1398, 1465
AgsI TTSAA 6 cut(s) 89, 253, 455, 903, 1338, 1422
AjnI CCWGG 2 cut(s) 760, 865
AleI CACNNNNGTG 1 cut(s) 810
AluBI AGCT 7 cut(s) 247, 319, 1042, 1300, 1368, 1455, 1567
AluI AGCT 7 cut(s) 247, 319, 1042, 1300, 1368, 1455, 1567
Alw26I GTCTC 5 cut(s) 289, 562, 623, 1330, 1350
AlwI GGATC 2 cut(s) 173, 1128
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 1 cut(s) 758
ApeKI GCWGC 4 cut(s) 316, 346, 1455, 1567
ApoI RAATTY 4 cut(s) 797, 1159, 1245, 1417
ArsI GACNNNNNNTTYG 2 cut(s) 787, 819
Asp718I GGTACC 1 cut(s) 739
AspS9I GGNCC 3 cut(s) 332, 758, 1480
AsuC2I CCSGG 1 cut(s) 1169
AsuHPI GGTGA 4 cut(s) 91, 293, 518, 768
AvaII GGWCC 2 cut(s) 332, 1480
BanI GGYRCC 2 cut(s) 4, 739
BanII GRGCYC 1 cut(s) 1058
BbvI GCAGC 4 cut(s) 328, 358, 1442, 1554
BccI CCATC 2 cut(s) 545, 713
BceAI ACGGC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 1016, 1050
BciT130I CCWGG 2 cut(s) 762, 867
BciVI GTATCC 2 cut(s) 386, 826
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 1 cut(s) 1169
BcoDI GTCTC 5 cut(s) 289, 562, 623, 1330, 1350
BfaI CTAG 2 cut(s) 831, 1440
BfuI GTATCC 2 cut(s) 386, 826
BglII AGATCT 1 cut(s) 123
BisI GCNGC 4 cut(s) 317, 347, 1456, 1568
BlsI GCNGC 4 cut(s) 318, 348, 1457, 1569
Bme1390I CCNGG 3 cut(s) 762, 867, 1169
Bme18I GGWCC 2 cut(s) 332, 1480
BmgT120I GGNCC 3 cut(s) 332, 758, 1480
BmiI GGNNCC 5 cut(s) 6, 741, 759, 838, 1481
BmrFI CCNGG 3 cut(s) 762, 867, 1169
BmrI ACTGGG 1 cut(s) 1455
BmsI GCATC 6 cut(s) 148, 490, 567, 961, 1504, 1600
BmuI ACTGGG 1 cut(s) 1455
BoxI GACNNNNGTC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 1169
BsaBI GATNNNNATC 1 cut(s) 1185
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 3 cut(s) 735, 865, 866
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 839, 869
Bsc4I CCNNNNNNNGG 2 cut(s) 1398, 1465
Bse1I ACTGG 2 cut(s) 299, 1461
Bse3DI GCAATG 1 cut(s) 1140
Bse8I GATNNNNATC 1 cut(s) 1185
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 2 cut(s) 762, 867
BseDI CCNNGG 3 cut(s) 735, 865, 866
BseGI GGATG 6 cut(s) 66, 112, 439, 899, 1186, 1531
BseJI GATNNNNATC 1 cut(s) 1185
BseLI CCNNNNNNNGG 2 cut(s) 1398, 1465
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 4 cut(s) 134, 557, 1227, 1239
BseNI ACTGG 2 cut(s) 299, 1461
BseRI GAGGAG 1 cut(s) 935
BseXI GCAGC 4 cut(s) 328, 358, 1442, 1554
BshFI GGCC 1 cut(s) 760
BshNI GGYRCC 2 cut(s) 4, 739
BsiSI CCGG 2 cut(s) 182, 1168
BslFI GGGAC 2 cut(s) 1035, 1187
BslI CCNNNNNNNGG 2 cut(s) 1398, 1465
BsmAI GTCTC 5 cut(s) 289, 562, 623, 1330, 1350
BsmBI CGTCTC 1 cut(s) 623
BsmFI GGGAC 2 cut(s) 1035, 1187
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 1 cut(s) 760
Bso31I GGTCTC 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 1058
Bsp13I TCCGGA 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 6 cut(s) 123, 178, 685, 1120, 1219, 1306
BspACI CCGC 2 cut(s) 237, 779
BspANI GGCC 1 cut(s) 760
BspCNI CTCAG 4 cut(s) 133, 558, 1228, 1238
BspEI TCCGGA 1 cut(s) 181
BspHI TCATGA 2 cut(s) 484, 688
BspLI GGNNCC 5 cut(s) 6, 741, 759, 838, 1481
BspPI GGATC 2 cut(s) 173, 1128
BspT107I GGYRCC 2 cut(s) 4, 739
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 1140
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 2 cut(s) 299, 1461
BssECI CCNNGG 3 cut(s) 735, 865, 866
BssMI GATC 6 cut(s) 123, 178, 685, 1120, 1219, 1306
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 762, 867
Bst4CI ACNGT 5 cut(s) 1111, 1201, 1217, 1547, 1594
Bst6I CTCTTC 3 cut(s) 15, 530, 1515
BstAUI TGTACA 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 8 cut(s) 120, 566, 572, 644, 1043, 1225, 1236, 1301
BstF5I GGATG 6 cut(s) 66, 112, 439, 899, 1186, 1531
BstKTI GATC 6 cut(s) 126, 181, 688, 1123, 1222, 1309
BstMAI GTCTC 5 cut(s) 289, 562, 623, 1330, 1350
BstMBI GATC 6 cut(s) 123, 178, 685, 1120, 1219, 1306
BstMWI GCNNNNNNNGC 2 cut(s) 757, 1151
BstNI CCWGG 2 cut(s) 762, 867
BstNSI RCATGY 1 cut(s) 1352
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 3 cut(s) 760, 865, 1167
BstV1I GCAGC 4 cut(s) 328, 358, 1442, 1554
BstX2I RGATCY 3 cut(s) 123, 178, 1120
BstYI RGATCY 3 cut(s) 123, 178, 1120
BsuI GTATCC 2 cut(s) 386, 826
BsuRI GGCC 1 cut(s) 760
BtsCI GGATG 6 cut(s) 66, 112, 439, 899, 1186, 1531
BtsIMutI CAGTG 4 cut(s) 306, 681, 1056, 1197
Cac8I GCNNGC 1 cut(s) 314
CciI TCATGA 2 cut(s) 484, 688
Cfr13I GGNCC 3 cut(s) 332, 758, 1480
CseI GACGC 1 cut(s) 210
Csp6I GTAC 4 cut(s) 166, 740, 885, 1536
CviQI GTAC 4 cut(s) 166, 740, 885, 1536
DdeI CTNAG 8 cut(s) 120, 566, 572, 644, 1043, 1225, 1236, 1301
DpnI GATC 6 cut(s) 125, 180, 687, 1122, 1221, 1308
DpnII GATC 6 cut(s) 123, 178, 685, 1120, 1219, 1306
DraIII CACNNNGTG 1 cut(s) 647
Eam1104I CTCTTC 3 cut(s) 15, 530, 1515
EarI CTCTTC 3 cut(s) 15, 530, 1515
Eco130I CCWWGG 1 cut(s) 735
Eco24I GRGCYC 1 cut(s) 1058
Eco31I GGTCTC 1 cut(s) 289
Eco32I GATATC 1 cut(s) 679
Eco47I GGWCC 2 cut(s) 332, 1480
EcoRII CCWGG 2 cut(s) 760, 865
EcoRV GATATC 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 735
EcoT22I ATGCAT 1 cut(s) 909
EcoT38I GRGCYC 1 cut(s) 1058
ErhI CCWWGG 1 cut(s) 735
Esp3I CGTCTC 1 cut(s) 623
FaqI GGGAC 2 cut(s) 1035, 1187
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 4 cut(s) 317, 347, 1456, 1568
FokI GGATG 6 cut(s) 73, 99, 426, 906, 1173, 1538
FriOI GRGCYC 1 cut(s) 1058
Fsp4HI GCNGC 4 cut(s) 317, 347, 1456, 1568
FspBI CTAG 2 cut(s) 831, 1440
GluI GCNGC 4 cut(s) 317, 347, 1456, 1568
HaeIII GGCC 1 cut(s) 760
HapII CCGG 2 cut(s) 182, 1168
HgaI GACGC 1 cut(s) 210
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 9 cut(s) 416, 455, 773, 944, 980, 1033, 1096, 1181, 1619
HpaII CCGG 2 cut(s) 182, 1168
HphI GGTGA 4 cut(s) 91, 293, 518, 768
Hpy166II GTNNAC 2 cut(s) 43, 517
Hpy188III TCNNGA 8 cut(s) 182, 485, 689, 878, 935, 1037, 1059, 1511
Hpy8I GTNNAC 2 cut(s) 43, 517
HpyAV CCTTC 6 cut(s) 272, 584, 850, 1215, 1246, 1445
HpyCH4III ACNGT 5 cut(s) 1111, 1201, 1217, 1547, 1594
HpyCH4V TGCA 8 cut(s) 108, 581, 653, 907, 1117, 1154, 1517, 1587
HpyF10VI GCNNNNNNNGC 2 cut(s) 757, 1151
HpyF3I CTNAG 8 cut(s) 120, 566, 572, 644, 1043, 1225, 1236, 1301
Kpn2I TCCGGA 1 cut(s) 181
KpnI GGTACC 1 cut(s) 743
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 6 cut(s) 123, 178, 685, 1120, 1219, 1306
LmnI GCTCC 2 cut(s) 1297, 1365
Lsp1109I GCAGC 4 cut(s) 328, 358, 1442, 1554
LweI GCATC 6 cut(s) 148, 490, 567, 961, 1504, 1600
MaeI CTAG 2 cut(s) 831, 1440
MaeIII GTNAC 4 cut(s) 79, 694, 803, 1105
MalI GATC 6 cut(s) 125, 180, 687, 1122, 1221, 1308
MboI GATC 6 cut(s) 123, 178, 685, 1120, 1219, 1306
MfeI CAATTG 2 cut(s) 240, 808
MflI RGATCY 3 cut(s) 123, 178, 1120
MhlI GDGCHC 1 cut(s) 1058
MlyI GAGTC 2 cut(s) 953, 1042
MmeI TCCRAC 2 cut(s) 654, 843
Mph1103I ATGCAT 1 cut(s) 909
MroI TCCGGA 1 cut(s) 181
MseI TTAA 2 cut(s) 1125, 1428
MslI CAYNNNNRTG 5 cut(s) 486, 489, 810, 894, 1112
MspA1I CMGCKG 1 cut(s) 1567
MspI CCGG 2 cut(s) 182, 1168
MspR9I CCNGG 3 cut(s) 762, 867, 1169
MunI CAATTG 2 cut(s) 240, 808
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 2 cut(s) 762, 867
MwoI GCNNNNNNNGC 2 cut(s) 757, 1151
NciI CCSGG 1 cut(s) 1169
NdeII GATC 6 cut(s) 123, 178, 685, 1120, 1219, 1306
NlaIV GGNNCC 5 cut(s) 6, 741, 759, 838, 1481
NmuCI GTSAC 3 cut(s) 79, 803, 1105
NsiI ATGCAT 1 cut(s) 909
NspI RCATGY 1 cut(s) 1352
OliI CACNNNNGTG 1 cut(s) 810
PagI TCATGA 2 cut(s) 484, 688
PasI CCCWGGG 1 cut(s) 866
PctI GAATGC 1 cut(s) 110
PfeI GAWTC 7 cut(s) 416, 455, 773, 980, 1096, 1181, 1619
PfoI TCCNGGA 1 cut(s) 1167
PkrI GCNGC 4 cut(s) 318, 348, 1457, 1569
PleI GAGTC 2 cut(s) 952, 1041
PpsI GAGTC 2 cut(s) 952, 1041
PshAI GACNNNNGTC 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 760, 865
PspGI CCWGG 2 cut(s) 760, 865
PspN4I GGNNCC 5 cut(s) 6, 741, 759, 838, 1481
PspPI GGNCC 3 cut(s) 332, 758, 1480
PsuI RGATCY 3 cut(s) 123, 178, 1120
PvuII CAGCTG 1 cut(s) 1567
RsaI GTAC 4 cut(s) 167, 741, 886, 1537
RsaNI GTAC 4 cut(s) 166, 740, 885, 1536
RseI CAYNNNNRTG 5 cut(s) 486, 489, 810, 894, 1112
SaqAI TTAA 2 cut(s) 1125, 1428
SatI GCNGC 4 cut(s) 317, 347, 1456, 1568
Sau3AI GATC 6 cut(s) 123, 178, 685, 1120, 1219, 1306
Sau96I GGNCC 3 cut(s) 332, 758, 1480
SchI GAGTC 2 cut(s) 953, 1042
ScrFI CCNGG 3 cut(s) 762, 867, 1169
SduI GDGCHC 1 cut(s) 1058
SfaNI GCATC 6 cut(s) 148, 490, 567, 961, 1504, 1600
SinI GGWCC 2 cut(s) 332, 1480
SmiMI CAYNNNNRTG 5 cut(s) 486, 489, 810, 894, 1112
SmlI CTYRAG 1 cut(s) 876
SmoI CTYRAG 1 cut(s) 876
SsiI CCGC 2 cut(s) 237, 779
SspMI CTAG 2 cut(s) 831, 1440
StyD4I CCNGG 3 cut(s) 760, 865, 1167
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 5 cut(s) 1111, 1201, 1217, 1547, 1594
TaqI TCGA 2 cut(s) 398, 1208
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 7 cut(s) 416, 455, 773, 980, 1096, 1181, 1619
Tru1I TTAA 2 cut(s) 1125, 1428
Tru9I TTAA 2 cut(s) 1125, 1428
TscAI CASTG 4 cut(s) 306, 688, 1056, 1204
TseFI GTSAC 3 cut(s) 79, 803, 1105
TseI GCWGC 4 cut(s) 316, 346, 1455, 1567
Tsp45I GTSAC 3 cut(s) 79, 803, 1105
TspGWI ACGGA 1 cut(s) 647
TspRI CASTG 4 cut(s) 306, 688, 1056, 1204
VpaK11BI GGWCC 2 cut(s) 332, 1480
XapI RAATTY 4 cut(s) 797, 1159, 1245, 1417
XceI RCATGY 1 cut(s) 1352
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XspI CTAG 2 cut(s) 831, 1440
Zsp2I ATGCAT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.