MD12G1236900.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
31062876 .. 31066333
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1236900.v1.1.491

Sequence Viewer

Length: 1782 bp
ATGATAAATCCTCTCCATTTTCTCTCTCTCCTCTATCTCTGTGTTTGTGTCAGAATATACAAAGAAATAGCCGACGGGGAAGAAGCAGCAGCTAACCAGAAGAAGGAAAGCCAAAAAGTGAGGATTGGTTTCACAGAAATGAATGGTCTCTCACATCTTGAACCGGATTTCTCTGAGTTTGTGGAAGTTGATCCAACTGGGAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCTAAGACAGTTTACAGAGCATTTGATGAGTATGAAGGGATGGAAGTTGCTTGGAACCAGGTCAAGCTCTATGATTTCCTGCAGAGCCCTGAAGATCTTGAGAGGCTCTACTGTGAAATCCACCTCCTCAAGACATTGAAGCACGGAAACATCATGAAGTTCTACACTTCCTGGGTTGATCCTGCCAACAGAAACATCAATTTTGTCACTGAAATGTTCACCTCTGGGACCCTTAAGCAGTATAGGTTAAAGCACAAGAGAGTAAACATTAGAGCAGTGAAGCATTGGTGTAGGCAGATCTTGAGAGGGCTTCTGTATCTTCATAGCCATGACCCTCCTGTGATCCATAGAGATCTCAAGTGTGACAATATCTTCATCAATGGAAACCAAGGGGAAGTGAAGATCGGTGACCTTGGTTTAGCTGCAATCTTAAGGAAATCGCAGGCTGCGCACTGCGTTGGGACACCAGAGTTCATGGCTCCTGAAGTGTATGAAGAGGCATATAATGAGCTAGTTGACATTTATTCATTTGGGATGTGCATTTTGGAAATGGTCACTTTCGAATATCCGTATAGCGAATGCTCTCATCCTGTACAGATCTACAAGAAAGTTGTTTCTGGTAAAAAACCAGATGCTTTGTACAAAGTTAAAGATCCAGAAGTACGACAATTCGTTGAGAAATGCTTGGCAACTGCGTCATCGAGGCTCTCTGCAAGGGAGCTTTTAAACGACCGTTTTCTCCAAATTGATGAGTGTGAATATGATTTGAGATCACTAGATTATAGTAGGCAGCTAGATAACATGGGTCCTTTTGTAAGGCAGCCTCTATTAGAGCTTCATCGAAGCAACAGTTCCTTTAGTAATGGATACTCGAATGGTTACAATTTTGATGCCCCAAATGAGTGGGGGTATCAGCCTGTTGATGTAGAATCAACTGGAATCGAACTGTTTGAGCATCGTGAGGATGATCATTCTGAAGATGTCGGCATGAGTATTAAAGGGACGAGAATAGAAGACGGTGGTATCTTTTTTAGACTTAGAATTACAGATAAAGGAGGTCGTGTACGCAACATTTATTTCACATTTGACACCGAGAATGATACAGCATTGAGTGTGTCAACTGAAATGGTTGCAGAGTTGGTTATGACCGATCAAGATGTAACCAGAATAGCAGATATGATTGATGGGGTAATTTCCTTGTTGGTACCCGATTGGCAGTCAGGACCAGGACTAGTGGAAACACCCCCGTGTGCTAATCAAAGCTTTTGTCACAATTATGTTTCTAATCACACCTCTAGTGGTTCCATGATGGAGTATCTGTCGAACCACCCTAGCGCCAAGGACTTGCAAGCTATTCAATGTTGTAAACATGGTTGTCCTTCAATGCACGGTCGTTTTGAGGAGATTACATACCAAGTTGATGAGTCTGAGCATCATGTGAAAGGGGGTGCACCAAATGAATCAAACCAATCAGACTGCCCTCAATACCAAGAAATTTGGGGACAGCAGCCACACACGAAGGTCGAGAACTTAGTTCAGTAG

Protein Analysis

594

Amino Acids

67.85

Weight (kDa)

5.31

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 73 - 327 7.6e-50 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 73 - 321 3.3e-32 Protein tyrosine and serine/threonine kinase
OSR1_C PF12202 424 - 478 6.2e-06 Oxidative-stress-responsive kinase 1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 690
Acc65I GGTACC 1 cut(s) 1444
AccB1I GGYRCC 1 cut(s) 1444
AclWI GGATC 4 cut(s) 185, 413, 577, 887
AcsI RAATTY 1 cut(s) 1734
AcuI CTGAAG 3 cut(s) 351, 744, 1236
AfaI GTAC 5 cut(s) 834, 881, 903, 1305, 1446
AfiI CCNNNNNNNGG 1 cut(s) 103
AflII CTTAAG 2 cut(s) 473, 670
AgsI TTSAA 4 cut(s) 161, 379, 1598, 1623
AhlI ACTAGT 1 cut(s) 1471
AjnI CCWGG 3 cut(s) 297, 410, 1465
AleI CACNNNNGTG 1 cut(s) 1486
Alw21I GWGCWC 1 cut(s) 1693
Alw26I GTCTC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 1689
AlwI GGATC 4 cut(s) 185, 413, 577, 887
ApaLI GTGCAC 1 cut(s) 1689
ApeKI GCWGC 7 cut(s) 86, 89, 662, 686, 1030, 1060, 1747
ApoI RAATTY 1 cut(s) 1734
ArsI GACNNNNNNTTYG 2 cut(s) 1492, 1524
Asp718I GGTACC 1 cut(s) 1444
AspLEI GCGC 2 cut(s) 691, 1577
AspS9I GGNCC 3 cut(s) 468, 1046, 1463
AsuHPI GGTGA 2 cut(s) 451, 659
AsuII TTCGAA 1 cut(s) 801
AvaII GGWCC 3 cut(s) 468, 1046, 1463
BaeGI GKGCMC 1 cut(s) 1693
BaeI ACNNNNGTAYC 2 cut(s) 1246, 1279
BanI GGYRCC 1 cut(s) 1444
BanII GRGCYC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 1260
Bbv12I GWGCWC 1 cut(s) 1693
BbvI GCAGC 7 cut(s) 98, 101, 649, 673, 1042, 1072, 1759
BccI CCATC 3 cut(s) 274, 1418, 1543
BciT130I CCWGG 3 cut(s) 299, 412, 1467
BciVI GTATCC 1 cut(s) 1100
BclI TGATCA 1 cut(s) 1207
BcoDI GTCTC 1 cut(s) 152
BcuI ACTAGT 1 cut(s) 1471
BfaI CTAG 6 cut(s) 752, 1016, 1034, 1472, 1536, 1572
BfmI CTRYAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 1578
BfrI CTTAAG 2 cut(s) 473, 670
BfuI GTATCC 1 cut(s) 1100
BglII AGATCT 4 cut(s) 334, 537, 592, 837
BisI GCNGC 7 cut(s) 87, 90, 663, 687, 1031, 1061, 1748
BlsI GCNGC 7 cut(s) 88, 91, 664, 688, 1032, 1062, 1749
Bme1390I CCNGG 3 cut(s) 299, 412, 1467
Bme18I GGWCC 3 cut(s) 468, 1046, 1463
BmgT120I GGNCC 3 cut(s) 468, 1046, 1463
BmiI GGNNCC 7 cut(s) 296, 469, 470, 720, 1047, 1446, 1543
BmrFI CCNGG 3 cut(s) 299, 412, 1467
BmrI ACTGGG 1 cut(s) 207
BmsI GCATC 4 cut(s) 862, 1120, 1204, 1681
BmuI ACTGGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 1260
Bpu14I TTCGAA 1 cut(s) 801
BpuEI CTTGAG 4 cut(s) 353, 359, 562, 581
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 5 cut(s) 226, 411, 628, 652, 1578
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 4 cut(s) 1287, 1317, 1544, 1574
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 2 cut(s) 202, 1180
BseBI CCWGG 3 cut(s) 299, 412, 1467
BseDI CCNNGG 5 cut(s) 226, 411, 628, 652, 1578
BseGI GGATG 4 cut(s) 285, 780, 826, 1210
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 165, 1659
BseNI ACTGG 2 cut(s) 202, 1180
BseRI GAGGAG 3 cut(s) 20, 356, 1655
BseSI GKGCMC 1 cut(s) 1693
BseXI GCAGC 7 cut(s) 98, 101, 649, 673, 1042, 1072, 1759
Bsh1285I CGRYCG 2 cut(s) 973, 1633
BshNI GGYRCC 1 cut(s) 1444
BsiEI CGRYCG 2 cut(s) 973, 1633
BsiHKAI GWGCWC 1 cut(s) 1693
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 4 cut(s) 481, 715, 1255, 1755
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 4 cut(s) 481, 715, 1255, 1755
BsmI GAATGC 1 cut(s) 824
Bso31I GGTCTC 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 801
Bsp1286I GDGCHC 2 cut(s) 329, 1693
Bsp1407I TGTACA 2 cut(s) 832, 879
BspCNI CTCAG 2 cut(s) 166, 1660
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 7 cut(s) 296, 469, 470, 720, 1047, 1446, 1543
BspMAI CTGCAG 1 cut(s) 324
BspPI GGATC 4 cut(s) 185, 413, 577, 887
BspT104I TTCGAA 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 1444
BspTI CTTAAG 2 cut(s) 473, 670
BspTNI GGTCTC 1 cut(s) 152
BsrGI TGTACA 2 cut(s) 832, 879
BsrI ACTGG 2 cut(s) 202, 1180
BssECI CCNNGG 5 cut(s) 226, 411, 628, 652, 1578
BssT1I CCWWGG 4 cut(s) 226, 628, 652, 1578
Bst2UI CCWGG 3 cut(s) 299, 412, 1467
Bst4CI ACNGT 7 cut(s) 250, 353, 974, 1091, 1188, 1259, 1631
Bst6I CTCTTC 1 cut(s) 729
BstAFI CTTAAG 2 cut(s) 473, 670
BstAUI TGTACA 2 cut(s) 832, 879
BstBI TTCGAA 1 cut(s) 801
BstC8I GCNNGC 2 cut(s) 684, 1590
BstDEI CTNAG 5 cut(s) 174, 243, 1277, 1668, 1771
BstEII GGTNACC 1 cut(s) 647
BstF5I GGATG 4 cut(s) 285, 780, 826, 1210
BstH2I RGCGCY 1 cut(s) 1578
BstHHI GCGC 2 cut(s) 691, 1577
BstMAI GTCTC 1 cut(s) 152
BstMCI CGRYCG 2 cut(s) 973, 1633
BstMWI GCNNNNNNNGC 1 cut(s) 688
BstNI CCWGG 3 cut(s) 299, 412, 1467
BstPI GGTNACC 1 cut(s) 647
BstSCI CCNGG 3 cut(s) 297, 410, 1465
BstSFI CTRYAG 1 cut(s) 320
BstSLI GKGCMC 1 cut(s) 1693
BstV1I GCAGC 7 cut(s) 98, 101, 649, 673, 1042, 1072, 1759
BstV2I GAAGAC 1 cut(s) 1260
BstX2I RGATCY 5 cut(s) 334, 537, 592, 837, 892
BstXI CCANNNNNNTGG 1 cut(s) 1143
BstYI RGATCY 5 cut(s) 334, 537, 592, 837, 892
BsuI GTATCC 1 cut(s) 1100
BtsCI GGATG 4 cut(s) 285, 780, 826, 1210
BtsI GCAGTG 2 cut(s) 522, 691
BtsIMutI CAGTG 3 cut(s) 447, 522, 691
Cac8I GCNNGC 2 cut(s) 684, 1590
CciI TCATGA 1 cut(s) 393
CfoI GCGC 2 cut(s) 691, 1577
Cfr13I GGNCC 3 cut(s) 468, 1046, 1463
CseI GACGC 1 cut(s) 924
CsiI ACCWGGT 1 cut(s) 297
Csp6I GTAC 5 cut(s) 833, 880, 902, 1304, 1445
CviAII CATG 8 cut(s) 394, 569, 715, 1042, 1228, 1546, 1610, 1676
CviQI GTAC 5 cut(s) 833, 880, 902, 1304, 1445
DdeI CTNAG 5 cut(s) 174, 243, 1277, 1668, 1771
DraI TTTAAA 1 cut(s) 966
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Eco130I CCWWGG 4 cut(s) 226, 628, 652, 1578
Eco24I GRGCYC 1 cut(s) 329
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 3 cut(s) 468, 1046, 1463
Eco57I CTGAAG 3 cut(s) 351, 744, 1236
Eco91I GGTNACC 1 cut(s) 647
EcoO109I RGGNCCY 2 cut(s) 468, 1046
EcoO65I GGTNACC 1 cut(s) 647
EcoRII CCWGG 3 cut(s) 297, 410, 1465
EcoT14I CCWWGG 4 cut(s) 226, 628, 652, 1578
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 4 cut(s) 226, 628, 652, 1578
FaeI CATG 8 cut(s) 397, 572, 718, 1045, 1231, 1549, 1613, 1679
FaqI GGGAC 4 cut(s) 481, 715, 1255, 1755
FatI CATG 8 cut(s) 393, 568, 714, 1041, 1227, 1545, 1609, 1675
FbaI TGATCA 1 cut(s) 1207
Fnu4HI GCNGC 7 cut(s) 87, 90, 663, 687, 1031, 1061, 1748
FokI GGATG 4 cut(s) 292, 787, 813, 1217
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 7 cut(s) 87, 90, 663, 687, 1031, 1061, 1748
FspBI CTAG 6 cut(s) 752, 1016, 1034, 1472, 1536, 1572
FspI TGCGCA 1 cut(s) 690
GlaI GCGC 2 cut(s) 690, 1576
GluI GCNGC 7 cut(s) 87, 90, 663, 687, 1031, 1061, 1748
HaeII RGCGCY 1 cut(s) 1578
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 924
HhaI GCGC 2 cut(s) 691, 1577
Hin1II CATG 8 cut(s) 397, 572, 718, 1045, 1231, 1549, 1613, 1679
Hin6I GCGC 2 cut(s) 689, 1575
HinP1I GCGC 2 cut(s) 689, 1575
HincII GTYRAC 2 cut(s) 757, 1359
HindII GTYRAC 2 cut(s) 757, 1359
HindIII AAGCTT 1 cut(s) 1501
HinfI GANTC 4 cut(s) 1169, 1179, 1664, 1700
HpaII CCGG 1 cut(s) 164
HphI GGTGA 2 cut(s) 451, 659
Hpy166II GTNNAC 8 cut(s) 253, 459, 505, 757, 1304, 1359, 1607, 1691
Hpy188I TCNGA 5 cut(s) 53, 175, 1216, 1669, 1714
Hpy8I GTNNAC 8 cut(s) 253, 459, 505, 757, 1304, 1359, 1607, 1691
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 4 cut(s) 97, 269, 1629, 1753
HpyCH4III ACNGT 7 cut(s) 250, 353, 974, 1091, 1188, 1259, 1631
HpyCH4V TGCA 8 cut(s) 322, 665, 780, 953, 1373, 1588, 1627, 1691
HpyF10VI GCNNNNNNNGC 1 cut(s) 688
HpyF3I CTNAG 5 cut(s) 174, 243, 1277, 1668, 1771
Hsp92II CATG 8 cut(s) 397, 572, 718, 1045, 1231, 1549, 1613, 1679
HspAI GCGC 2 cut(s) 689, 1575
KflI GGGWCCC 1 cut(s) 468
KpnI GGTACC 1 cut(s) 1448
Ksp22I TGATCA 1 cut(s) 1207
LmnI GCTCC 3 cut(s) 236, 724, 958
Lsp1109I GCAGC 7 cut(s) 98, 101, 649, 673, 1042, 1072, 1759
LweI GCATC 4 cut(s) 862, 1120, 1204, 1681
MabI ACCWGGT 1 cut(s) 297
MaeI CTAG 6 cut(s) 752, 1016, 1034, 1472, 1536, 1572
MaeIII GTNAC 7 cut(s) 445, 602, 647, 793, 1118, 1399, 1508
MboII GAAGA 9 cut(s) 92, 112, 344, 551, 604, 652, 746, 1229, 1265
MflI RGATCY 5 cut(s) 334, 537, 592, 837, 892
MhlI GDGCHC 2 cut(s) 329, 1693
MluCI AATT 8 cut(s) 439, 908, 984, 1123, 1281, 1431, 1513, 1734
MlyI GAGTC 1 cut(s) 1673
MmeI TCCRAC 1 cut(s) 218
MseI TTAA 6 cut(s) 474, 488, 671, 888, 965, 1236
MslI CAYNNNNRTG 5 cut(s) 137, 452, 567, 1486, 1515
MspCI CTTAAG 2 cut(s) 473, 670
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 3 cut(s) 299, 412, 1467
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 3 cut(s) 299, 412, 1467
MwoI GCNNNNNNNGC 1 cut(s) 688
NlaIII CATG 8 cut(s) 397, 572, 718, 1045, 1231, 1549, 1613, 1679
NlaIV GGNNCC 7 cut(s) 296, 469, 470, 720, 1047, 1446, 1543
NmuCI GTSAC 5 cut(s) 445, 602, 647, 793, 1508
NsbI TGCGCA 1 cut(s) 690
NspV TTCGAA 1 cut(s) 801
OliI CACNNNNGTG 1 cut(s) 1486
PagI TCATGA 1 cut(s) 393
PctI GAATGC 1 cut(s) 824
PfeI GAWTC 3 cut(s) 1169, 1179, 1700
PkrI GCNGC 7 cut(s) 88, 91, 664, 688, 1032, 1062, 1749
PleI GAGTC 1 cut(s) 1672
PpsI GAGTC 1 cut(s) 1672
PpuMI RGGWCCY 2 cut(s) 468, 1046
Psp5II RGGWCCY 2 cut(s) 468, 1046
Psp6I CCWGG 3 cut(s) 297, 410, 1465
PspEI GGTNACC 1 cut(s) 647
PspGI CCWGG 3 cut(s) 297, 410, 1465
PspN4I GGNNCC 7 cut(s) 296, 469, 470, 720, 1047, 1446, 1543
PspPI GGNCC 3 cut(s) 468, 1046, 1463
PspPPI RGGWCCY 2 cut(s) 468, 1046
PstI CTGCAG 1 cut(s) 324
PsuI RGATCY 5 cut(s) 334, 537, 592, 837, 892
RsaI GTAC 5 cut(s) 834, 881, 903, 1305, 1446
RsaNI GTAC 5 cut(s) 833, 880, 902, 1304, 1445
RseI CAYNNNNRTG 5 cut(s) 137, 452, 567, 1486, 1515
SaqAI TTAA 6 cut(s) 474, 488, 671, 888, 965, 1236
SatI GCNGC 7 cut(s) 87, 90, 663, 687, 1031, 1061, 1748
Sau96I GGNCC 3 cut(s) 468, 1046, 1463
SchI GAGTC 1 cut(s) 1673
ScrFI CCNGG 3 cut(s) 299, 412, 1467
SduI GDGCHC 2 cut(s) 329, 1693
SexAI ACCWGGT 1 cut(s) 297
SfaNI GCATC 4 cut(s) 862, 1120, 1204, 1681
SfcI CTRYAG 1 cut(s) 320
SfuI TTCGAA 1 cut(s) 801
SinI GGWCC 3 cut(s) 468, 1046, 1463
SmiMI CAYNNNNRTG 5 cut(s) 137, 452, 567, 1486, 1515
SmlI CTYRAG 6 cut(s) 338, 368, 473, 541, 596, 670
SmoI CTYRAG 6 cut(s) 338, 368, 473, 541, 596, 670
SpeI ACTAGT 1 cut(s) 1471
Sse9I AATT 8 cut(s) 439, 908, 984, 1123, 1281, 1431, 1513, 1734
SspMI CTAG 6 cut(s) 752, 1016, 1034, 1472, 1536, 1572
StyD4I CCNGG 3 cut(s) 297, 410, 1465
StyI CCWWGG 4 cut(s) 226, 628, 652, 1578
TaaI ACNGT 7 cut(s) 250, 353, 974, 1091, 1188, 1259, 1631
TaqI TCGA 7 cut(s) 801, 941, 1081, 1112, 1182, 1562, 1764
TaqII GACCGA 1 cut(s) 1403
TasI AATT 8 cut(s) 439, 908, 984, 1123, 1281, 1431, 1513, 1734
TatI WGTACW 2 cut(s) 832, 879
TfiI GAWTC 3 cut(s) 1169, 1179, 1700
Tru1I TTAA 6 cut(s) 474, 488, 671, 888, 965, 1236
Tru9I TTAA 6 cut(s) 474, 488, 671, 888, 965, 1236
TscAI CASTG 3 cut(s) 454, 522, 698
TseFI GTSAC 5 cut(s) 445, 602, 647, 793, 1508
TseI GCWGC 7 cut(s) 86, 89, 662, 686, 1030, 1060, 1747
Tsp45I GTSAC 5 cut(s) 445, 602, 647, 793, 1508
TspGWI ACGGA 2 cut(s) 399, 798
TspRI CASTG 3 cut(s) 454, 522, 698
Vha464I CTTAAG 2 cut(s) 473, 670
VneI GTGCAC 1 cut(s) 1689
VpaK11BI GGWCC 3 cut(s) 468, 1046, 1463
XapI RAATTY 1 cut(s) 1734
XspI CTAG 6 cut(s) 752, 1016, 1034, 1472, 1536, 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.