RchiOBHm_Chr3g0451971

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
2820071 .. 2823717
3647 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41918

Sequence Viewer

Length: 2202 bp
ATGAATGGTCTCTCACATCTTGAACCGGATTACTCTGAGTTTGTTGAAGTAGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTAGGCAAAGGAGCTTCAAAGACAGTATACAGAGCATTTGATGAGTATGATGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTTTATGATTTTCTTCAAAGTCCTGAAGATCTTGAGAGGCTGTACTGTGAAATTCACCTCCTCAAGACACTCAAGCACAAGAACATTATGAAGTTCTACACTTCTTGGGTTGATACTTCAAAAAGAAACATCAATTTTGTCACTGAAATGTTCACTTCTGGGACTCTTAAACAGTACAGGCTAAAGCACAAGAGTGTTAACATCAGAGCTGTGAAGCATTGGTGTAGGCAGATCTTGGGAGGGCTTTTGTATCTGCATAGCCGTGACCCTCCTGTGATTCATAGAGATCTCAAATGTGACAACATCTTTGTTAATGGAAATCAAGGGGAAGTGAAGATTGGTGATCTTGGTTTAGCAGCGATCTTAAGGAAATCACAACATGCTGCCCACTGTGTTGGGACACCAGAGTTCATGGCACCAGAAGTGTATGAAGAGGCATATAATGAGTTAGTTGACATATATTCGTTTGGGATGTGCGTTTTGGAAATGGTGACTTTTGAATATCCTTATAGTGAATGCACTCATCCTGCTCAGATCTACAAGAAAGTTGTATCAGGGAAAAAACCAGATGCTTTGTACAAAGTGAAAGATCCGGAAGTAAGGAAGTTTGTTGAGAAATGCTTGGCAACTGCATCTGTGAGGCACTCCGCAATTGAGCTTTTGAACGATGATTTTCTCCGAATAGATGAAGGTGAATATGATTTGAGACCAGTGAATTACGGCAGGCAGCTTGATGACATTGATCCTCTTGTAAGGCAGCCTCTTTACGAGGTTCATCAAAGCAACAGTTCGTTTAGTAATGAATACTCGAATGGTTATGGTTTCGATTCCCAAAACGAATGGGGGTATCATCCTTTTGAGGTTGAATCAAGTGGAATAGAACTCTTTGAGCATCATGATGATGATGAACATGGTGAAGATGTGGACATAAGTATTAGAGGGAAGAGAAAAGAAGAAGATGGTAGCATCATTCTGAGACTTAGAATTGCAGATAAAGAAGGACATATTAGGAAGATTTATTTCCCATTTGACATTGAGACAGACACAGCACTAAGTGTTGCAACTGAAATGGTGGCAGAGTTGGATATCACTGATCATGATGTAACCGAAATAGCAGATATGATTGATGGGGAAATTGCTTCCTTGGTACCTGATTGGCAGTCGGGGCCAGGAATAGTGGAATCACCGCGTTTTTCCAATCAAAAATTTTGTCACAATTGTGTATCCAACCACACCTCTAGTGGTTCCTTCATGGAGTTTCTGTCTAATAACCCAGGAGCTACTCAAGATTGTACGCATGGATGTGCTTCAATGCATGGTCGTTTTGAGGAGATTACATATCAAGAAGACGAGTCAAAGCATCGTGTGACGGAGGATATACCAAATGAATCAAGCCAATCAGACTGCCTACATTACCAAGAAATCTGGGGACAGCATGAGAGTCGTGAGCTTAGTTCAGTGGGCTCTGGACAGAGCCATTCAGATGAAGAATATGAAAAAATGAATCAGTTAGTCACAGTCATGCAGGATCTTAAATTGGACAACACCATTGCTTCCGATGCAAGAAATTCTCTCCGGGATTTATCCAGTTCACATCCCTTTTCCACTGTCCCTTCGATATACTGTGATCTCTCAGACAATTCTGAGCATGAAATTCAGAAGGAATTGAGGTGGCTCAAAGCAAAGCACCAGATTGAGTTGAGGGAGCTTAGAGAGCAGCAGTTAGGACTTGTCTCAAAATCTTCAAACAAAGAACACGGGAGAGACAATGGGAGCTTATCATGTCTGGTATCAAACACCATGAAAGGGAACAACTATGACAGAAATTCAACTTTTAATTGCCTTCCTAGTCCTAATAAGAGCTGCCCCAGTTTGGAAACCCAAAGGGTCCGAAAATGTGAGGCGATATTGGAGTGTCCAGATGCAGAAGAGGATGATGTGGGTACTGCCAACAGTTTCTACACCCAATCACAGCTGCTTCCACACTCTCTTTGCAGGACAGTTTCTCTCCCCGTTGATGCTGTTGATTCGTAA

Protein Analysis

733

Amino Acids

83.54

Weight (kDa)

5.03

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 27 - 281 1.8e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 27 - 267 1.6e-32 Protein tyrosine and serine/threonine kinase
OSR1_C PF12202 380 - 435 3.6e-06 Oxidative-stress-responsive kinase 1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1315
AccB1I GGYRCC 2 cut(s) 583, 1315
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 1357
AccIII TCCGGA 1 cut(s) 760
AciI CCGC 2 cut(s) 816, 1355
AclWI GGATC 4 cut(s) 47, 752, 905, 1704
AcsI RAATTY 5 cut(s) 219, 1373, 1735, 1821, 1993
AcuI CTGAAG 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 1223
AfaI GTAC 6 cut(s) 212, 344, 746, 1317, 1462, 2113
AfiI CCNNNNNNNGG 2 cut(s) 1974, 2041
AflII CTTAAG 1 cut(s) 532
AjnI CCWGG 3 cut(s) 159, 1336, 1441
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AleI CACNNNNGTG 2 cut(s) 360, 1386
Alw26I GTCTC 6 cut(s) 14, 868, 1138, 1199, 1906, 1926
AlwI GGATC 4 cut(s) 47, 752, 905, 1704
Aor13HI TCCGGA 1 cut(s) 760
AoxI GGCC 1 cut(s) 1334
ApeKI GCWGC 7 cut(s) 524, 551, 895, 925, 1885, 2031, 2143
ApoI RAATTY 5 cut(s) 219, 1373, 1735, 1821, 1993
ArsI GACNNNNNNTTYG 4 cut(s) 458, 490, 1363, 1395
Asp718I GGTACC 1 cut(s) 1315
AspA2I CCTAGG 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 1334, 2056
AsuC2I CCSGG 1 cut(s) 1745
AsuHPI GGTGA 6 cut(s) 215, 521, 670, 872, 1094, 1344
AvaII GGWCC 1 cut(s) 2056
AvrII CCTAGG 1 cut(s) 88
BanI GGYRCC 2 cut(s) 583, 1315
BanII GRGCYC 1 cut(s) 1634
BbsI GAAGAC 1 cut(s) 1521
BbvI GCAGC 7 cut(s) 536, 538, 907, 937, 1897, 2018, 2130
BccI CCATC 3 cut(s) 131, 1121, 1289
BceAI ACGGC 2 cut(s) 414, 904
BcgI CGANNNNNNTGC 2 cut(s) 1592, 1626
BciT130I CCWGG 3 cut(s) 161, 1338, 1443
BciVI GTATCC 1 cut(s) 1402
BclI TGATCA 1 cut(s) 1261
BcnI CCSGG 1 cut(s) 1745
BcoDI GTCTC 6 cut(s) 14, 868, 1138, 1199, 1906, 1926
BfaI CTAG 3 cut(s) 89, 1407, 2016
BfrI CTTAAG 1 cut(s) 532
BfuI GTATCC 1 cut(s) 1402
BglII AGATCT 4 cut(s) 196, 399, 454, 702
BisI GCNGC 7 cut(s) 525, 552, 896, 926, 1886, 2032, 2144
BlnI CCTAGG 1 cut(s) 88
BlsI GCNGC 7 cut(s) 526, 553, 897, 927, 1887, 2033, 2145
Bme1390I CCNGG 4 cut(s) 161, 1338, 1443, 1745
Bme18I GGWCC 1 cut(s) 2056
BmgT120I GGNCC 2 cut(s) 1334, 2056
BmiI GGNNCC 6 cut(s) 158, 585, 1317, 1335, 1414, 2057
BmrFI CCNGG 4 cut(s) 161, 1338, 1443, 1745
BmrI ACTGGG 1 cut(s) 2031
BmsI GCATC 8 cut(s) 727, 809, 1069, 1143, 1537, 1717, 2080, 2176
BmuI ACTGGG 1 cut(s) 2031
BpiI GAAGAC 1 cut(s) 1521
BpuEI CTTGAG 4 cut(s) 215, 221, 224, 1437
BpuMI CCSGG 1 cut(s) 1745
BsaI GGTCTC 2 cut(s) 14, 868
BsaJI CCNNGG 3 cut(s) 88, 1311, 1441
BsaWI WCCGGW 2 cut(s) 25, 760
BsaXI ACNNNNNCTCC 2 cut(s) 1415, 1445
Bsc4I CCNNNNNNNGG 2 cut(s) 1974, 2041
Bse1I ACTGG 4 cut(s) 64, 878, 1755, 2037
Bse3DI GCAATG 1 cut(s) 1716
BseAI TCCGGA 1 cut(s) 760
BseBI CCWGG 3 cut(s) 161, 1338, 1443
BseDI CCNNGG 3 cut(s) 88, 1311, 1441
BseGI GGATG 6 cut(s) 645, 691, 1018, 1475, 1762, 2107
BseLI CCNNNNNNNGG 2 cut(s) 1974, 2041
BseMI GCAATG 1 cut(s) 1716
BseMII CTCAG 5 cut(s) 27, 713, 1133, 1803, 1815
BseNI ACTGG 4 cut(s) 64, 878, 1755, 2037
BseRI GAGGAG 2 cut(s) 218, 1511
BseXI GCAGC 7 cut(s) 536, 538, 907, 937, 1897, 2018, 2130
Bsh1236I CGCG 1 cut(s) 1357
BshFI GGCC 1 cut(s) 1336
BshNI GGYRCC 2 cut(s) 583, 1315
BsiSI CCGG 3 cut(s) 26, 761, 1744
BslFI GGGAC 4 cut(s) 343, 580, 1611, 1763
BslI CCNNNNNNNGG 2 cut(s) 1974, 2041
BsmAI GTCTC 6 cut(s) 14, 868, 1138, 1199, 1906, 1926
BsmFI GGGAC 4 cut(s) 343, 580, 1611, 1763
BsmI GAATGC 1 cut(s) 689
BsnI GGCC 1 cut(s) 1336
Bso31I GGTCTC 2 cut(s) 14, 868
Bsp1286I GDGCHC 1 cut(s) 1634
Bsp13I TCCGGA 1 cut(s) 760
Bsp1407I TGTACA 1 cut(s) 744
BspACI CCGC 2 cut(s) 816, 1355
BspANI GGCC 1 cut(s) 1336
BspCNI CTCAG 5 cut(s) 28, 712, 1134, 1804, 1814
BspEI TCCGGA 1 cut(s) 760
BspFNI CGCG 1 cut(s) 1357
BspHI TCATGA 2 cut(s) 1063, 1264
BspLI GGNNCC 6 cut(s) 158, 585, 1317, 1335, 1414, 2057
BspPI GGATC 4 cut(s) 47, 752, 905, 1704
BspT107I GGYRCC 2 cut(s) 583, 1315
BspTI CTTAAG 1 cut(s) 532
BspTNI GGTCTC 2 cut(s) 14, 868
BsrDI GCAATG 1 cut(s) 1716
BsrGI TGTACA 1 cut(s) 744
BsrI ACTGG 4 cut(s) 64, 878, 1755, 2037
BssECI CCNNGG 3 cut(s) 88, 1311, 1441
BssNAI GTATAC 1 cut(s) 115
BssT1I CCWWGG 2 cut(s) 88, 1311
Bst1107I GTATAC 1 cut(s) 115
Bst2UI CCWGG 3 cut(s) 161, 1338, 1443
Bst6I CTCTTC 3 cut(s) 594, 1106, 2091
BstAFI CTTAAG 1 cut(s) 532
BstAUI TGTACA 1 cut(s) 744
BstC8I GCNNGC 1 cut(s) 893
BstDEI CTNAG 9 cut(s) 36, 699, 1142, 1148, 1220, 1619, 1801, 1812, 1877
BstF5I GGATG 6 cut(s) 645, 691, 1018, 1475, 1762, 2107
BstFNI CGCG 1 cut(s) 1357
BstMAI GTCTC 6 cut(s) 14, 868, 1138, 1199, 1906, 1926
BstMWI GCNNNNNNNGC 4 cut(s) 69, 1333, 1727, 1882
BstNI CCWGG 3 cut(s) 161, 1338, 1443
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 4 cut(s) 159, 1336, 1441, 1743
BstUI CGCG 1 cut(s) 1357
BstV1I GCAGC 7 cut(s) 536, 538, 907, 937, 1897, 2018, 2130
BstV2I GAAGAC 1 cut(s) 1521
BstX2I RGATCY 7 cut(s) 52, 196, 399, 454, 702, 757, 1696
BstXI CCANNNNNNTGG 1 cut(s) 563
BstYI RGATCY 7 cut(s) 52, 196, 399, 454, 702, 757, 1696
BstZ17I GTATAC 1 cut(s) 115
BsuI GTATCC 1 cut(s) 1402
BsuRI GGCC 1 cut(s) 1336
BtsCI GGATG 6 cut(s) 645, 691, 1018, 1475, 1762, 2107
BtsIMutI CAGTG 6 cut(s) 309, 556, 885, 1257, 1632, 1773
Cac8I GCNNGC 1 cut(s) 893
CciI TCATGA 2 cut(s) 1063, 1264
Cfr13I GGNCC 2 cut(s) 1334, 2056
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 6 cut(s) 211, 343, 745, 1316, 1461, 2112
CviQI GTAC 6 cut(s) 211, 343, 745, 1316, 1461, 2112
DdeI CTNAG 9 cut(s) 36, 699, 1142, 1148, 1220, 1619, 1801, 1812, 1877
DraIII CACNNNGTG 1 cut(s) 1223
Eam1104I CTCTTC 3 cut(s) 594, 1106, 2091
EarI CTCTTC 3 cut(s) 594, 1106, 2091
Eco130I CCWWGG 2 cut(s) 88, 1311
Eco24I GRGCYC 1 cut(s) 1634
Eco31I GGTCTC 2 cut(s) 14, 868
Eco32I GATATC 1 cut(s) 1255
Eco47I GGWCC 1 cut(s) 2056
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 3 cut(s) 159, 1336, 1441
EcoRV GATATC 1 cut(s) 1255
EcoT14I CCWWGG 2 cut(s) 88, 1311
EcoT22I ATGCAT 1 cut(s) 1485
EcoT38I GRGCYC 1 cut(s) 1634
ErhI CCWWGG 2 cut(s) 88, 1311
FaqI GGGAC 4 cut(s) 343, 580, 1611, 1763
FbaI TGATCA 1 cut(s) 1261
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 7 cut(s) 525, 552, 896, 926, 1886, 2032, 2144
FokI GGATG 6 cut(s) 652, 678, 1005, 1482, 1749, 2114
FriOI GRGCYC 1 cut(s) 1634
Fsp4HI GCNGC 7 cut(s) 525, 552, 896, 926, 1886, 2032, 2144
FspBI CTAG 3 cut(s) 89, 1407, 2016
GluI GCNGC 7 cut(s) 525, 552, 896, 926, 1886, 2032, 2144
HaeIII GGCC 1 cut(s) 1336
HapII CCGG 3 cut(s) 26, 761, 1744
HincII GTYRAC 2 cut(s) 367, 622
HindII GTYRAC 2 cut(s) 367, 622
HindIII AAGCTT 1 cut(s) 167
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 3 cut(s) 26, 761, 1744
HphI GGTGA 6 cut(s) 215, 521, 670, 872, 1094, 1344
Hpy166II GTNNAC 6 cut(s) 115, 321, 367, 622, 1093, 1760
Hpy8I GTNNAC 6 cut(s) 115, 321, 367, 622, 1093, 1760
HpyAV CCTTC 6 cut(s) 851, 1160, 1426, 1791, 1822, 2021
HpyF10VI GCNNNNNNNGC 4 cut(s) 69, 1333, 1727, 1882
HpyF3I CTNAG 9 cut(s) 36, 699, 1142, 1148, 1220, 1619, 1801, 1812, 1877
Kpn2I TCCGGA 1 cut(s) 760
KpnI GGTACC 1 cut(s) 1319
Ksp22I TGATCA 1 cut(s) 1261
KspAI GTTAAC 1 cut(s) 367
LmnI GCTCC 4 cut(s) 98, 1445, 1873, 1941
Lsp1109I GCAGC 7 cut(s) 536, 538, 907, 937, 1897, 2018, 2130
LweI GCATC 8 cut(s) 727, 809, 1069, 1143, 1537, 1717, 2080, 2176
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 3 cut(s) 89, 1407, 2016
MaeIII GTNAC 8 cut(s) 307, 431, 464, 658, 1270, 1379, 1534, 1681
MfeI CAATTG 2 cut(s) 819, 1384
MflI RGATCY 7 cut(s) 52, 196, 399, 454, 702, 757, 1696
MhlI GDGCHC 1 cut(s) 1634
MlyI GAGTC 3 cut(s) 325, 1529, 1618
MmeI TCCRAC 3 cut(s) 80, 1230, 1419
Mph1103I ATGCAT 1 cut(s) 1485
MroI TCCGGA 1 cut(s) 760
MseI TTAA 6 cut(s) 336, 366, 480, 533, 1701, 2004
MslI CAYNNNNRTG 9 cut(s) 314, 360, 429, 1065, 1068, 1386, 1470, 1650, 1688
MspA1I CMGCKG 1 cut(s) 2143
MspCI CTTAAG 1 cut(s) 532
MspI CCGG 3 cut(s) 26, 761, 1744
MspR9I CCNGG 4 cut(s) 161, 1338, 1443, 1745
MunI CAATTG 2 cut(s) 819, 1384
Mva1269I GAATGC 1 cut(s) 689
MvaI CCWGG 3 cut(s) 161, 1338, 1443
MvnI CGCG 1 cut(s) 1357
MwoI GCNNNNNNNGC 4 cut(s) 69, 1333, 1727, 1882
NciI CCSGG 1 cut(s) 1745
NlaIV GGNNCC 6 cut(s) 158, 585, 1317, 1335, 1414, 2057
NmuCI GTSAC 7 cut(s) 307, 431, 464, 658, 1379, 1534, 1681
NsiI ATGCAT 1 cut(s) 1485
NspI RCATGY 1 cut(s) 551
OliI CACNNNNGTG 2 cut(s) 360, 1386
PagI TCATGA 2 cut(s) 1063, 1264
PctI GAATGC 1 cut(s) 689
PfeI GAWTC 7 cut(s) 445, 995, 1034, 1349, 1556, 1672, 2195
PfoI TCCNGGA 1 cut(s) 1743
PkrI GCNGC 7 cut(s) 526, 553, 897, 927, 1887, 2033, 2145
PleI GAGTC 3 cut(s) 325, 1528, 1617
PpsI GAGTC 3 cut(s) 325, 1528, 1617
Psp6I CCWGG 3 cut(s) 159, 1336, 1441
PspGI CCWGG 3 cut(s) 159, 1336, 1441
PspN4I GGNNCC 6 cut(s) 158, 585, 1317, 1335, 1414, 2057
PspPI GGNCC 2 cut(s) 1334, 2056
PsuI RGATCY 7 cut(s) 52, 196, 399, 454, 702, 757, 1696
PvuII CAGCTG 1 cut(s) 2143
RsaI GTAC 6 cut(s) 212, 344, 746, 1317, 1462, 2113
RsaNI GTAC 6 cut(s) 211, 343, 745, 1316, 1461, 2112
RseI CAYNNNNRTG 9 cut(s) 314, 360, 429, 1065, 1068, 1386, 1470, 1650, 1688
SaqAI TTAA 6 cut(s) 336, 366, 480, 533, 1701, 2004
SatI GCNGC 7 cut(s) 525, 552, 896, 926, 1886, 2032, 2144
Sau96I GGNCC 2 cut(s) 1334, 2056
SchI GAGTC 3 cut(s) 325, 1529, 1618
ScrFI CCNGG 4 cut(s) 161, 1338, 1443, 1745
SduI GDGCHC 1 cut(s) 1634
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 8 cut(s) 727, 809, 1069, 1143, 1537, 1717, 2080, 2176
SinI GGWCC 1 cut(s) 2056
SmiMI CAYNNNNRTG 9 cut(s) 314, 360, 429, 1065, 1068, 1386, 1470, 1650, 1688
SmlI CTYRAG 5 cut(s) 200, 230, 239, 532, 1452
SmoI CTYRAG 5 cut(s) 200, 230, 239, 532, 1452
SsiI CCGC 2 cut(s) 816, 1355
SspMI CTAG 3 cut(s) 89, 1407, 2016
StyD4I CCNGG 4 cut(s) 159, 1336, 1441, 1743
StyI CCWWGG 2 cut(s) 88, 1311
TaqI TCGA 3 cut(s) 977, 993, 1784
TatI WGTACW 3 cut(s) 210, 342, 744
TfiI GAWTC 7 cut(s) 445, 995, 1034, 1349, 1556, 1672, 2195
Tru1I TTAA 6 cut(s) 336, 366, 480, 533, 1701, 2004
Tru9I TTAA 6 cut(s) 336, 366, 480, 533, 1701, 2004
TscAI CASTG 6 cut(s) 316, 563, 885, 1264, 1632, 1780
TseFI GTSAC 7 cut(s) 307, 431, 464, 658, 1379, 1534, 1681
TseI GCWGC 7 cut(s) 524, 551, 895, 925, 1885, 2031, 2143
Tsp45I GTSAC 7 cut(s) 307, 431, 464, 658, 1379, 1534, 1681
TspGWI ACGGA 1 cut(s) 1553
TspRI CASTG 6 cut(s) 316, 563, 885, 1264, 1632, 1780
Vha464I CTTAAG 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 2056
XapI RAATTY 5 cut(s) 219, 1373, 1735, 1821, 1993
XceI RCATGY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 1406
XmaJI CCTAGG 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 3 cut(s) 89, 1407, 2016
Zsp2I ATGCAT 1 cut(s) 1485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.