Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001186

Physical Location & Seq

Genomic Coordinates Reverse (-)

21226307 .. 21227842

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAATGGTCTCTCACATCTTGAACCAGATTACTGTGAGTTTGTTGAAGTTGATCCAACTGGGAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCTAAGACAGTTTACAGAGCATTTGATGAATATGAAGGGATAGAAGTTGCTTGGAACCAGGTCAAGCTTTATGATTTCCTGCAGAACCCTGAAGATCTTGAGAGGCTCTACTGTGAAATCCACCTCCTCAAGACATTGAAGCACAGAAACATCATGAAATTTTACACTTCCTGGGTTGATACTGCCAACAGAAACATCAATTTTGTCACTGAAATGTTCACCTCTGGGACCCTTAAGCAGTATAGGTTAAAGCACAAGAGAGTGAACATTAGAGTAGTGAAGAATTGGTGTAGGCAGATCTTGAGAGGGCTTCTGTATCTCCATAGCCATGACCCTCCTGTGATCCATAGAGATCTCAAGTGTGACAACATCTTTATCAATGGAAACCAAGGGGAAGTGAAGATTGGTGACCTTGGTTTAGCTGCAATCTTAAGGAAATCGCACGCCGCTCACTGCGTTGTAGGGACACCAGAGTTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAGCTAGTTGACATTTACTCATTTGGGATGTGCGTTCTGGAAATGGTCACTTTCGAATATCCGTATAGCGAATGCACTCATCCTGCTCAGATCTACAAGAAAGTTGTTTCTGGTAAAAAACCAGATGCTTTGTACAAAGTTAAAGATCCAGAAGTACGAGAATTTGTTGAGAAGTGCTTGGCAACTGCGTCGTTGAGGCTCTCTGCGAGGGAGCTTTTAAATGACCGTTTTCTCCAAATTGATGAATGTGAATATGATTTGATCGATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

295

Amino Acids

34.29

Weight (kDa)

6.02

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04910 AT3G04910 AT3G04910 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080 AT5G28080
fragaria_vesca	FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_4g15470 FvH4_6g03470 FvH4_6g03470
malus_domestica	MD04G1220500.v1.1 MD12G1236900.v1.1 MD13G1192500.v1.1 MD16G1193000.v1.1
prunus_persica	Prupe.1G013100_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1 Prupe.6G339500_v2.0.a1
pyrus_communis	pycom04g19520 pycom12g21800 pycom13g16490 pycom16g16300
rosa_chinensis	RchiOBHm_Chr3g0451971 RchiOBHm_Chr4g0416321
rosa_laevigata	RLG00000007995 RLG00000025633
rosa_multiflora	Rmu_sc0001145.1_g000025 Rmu_sc0006436.1_g000001
rosa_roxburghii	Rroxscaffold_164G00436150 Rroxscaffold_5G00360170 Rroxscaffold_6G00429140
rosa_rugosa	Rorug02G0637900 Rorug04G0140700 Rorug04G0140700
rosa_samantha	Rh3AG039500 Rh3BG040900 Rh3CG039400 Rh3DG040100 Rh4AG202900 Rh4BG200300 Rh4CG214500 Rh4DG200200
rosa_wichuraiana	Rw3G002970 Rw4G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	551
AciI	CCGC	1 cut(s)	549
AclWI	GGATC	3 cut(s)	47, 439, 752
AcsI	RAATTY	2 cut(s)	260, 773
AcuI	CTGAAG	2 cut(s)	213, 609
AfaI	GTAC	2 cut(s)	746, 768
AflII	CTTAAG	2 cut(s)	335, 532
AgsI	TTSAA	3 cut(s)	23, 47, 241
AjnI	CCWGG	2 cut(s)	159, 272
AjuI	GAANNNNNNNTTGG	2 cut(s)	489, 521
AluBI	AGCT	5 cut(s)	101, 169, 524, 616, 826
AluI	AGCT	5 cut(s)	101, 169, 524, 616, 826
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	3 cut(s)	47, 439, 752
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	2 cut(s)	260, 773
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	313, 521
AsuII	TTCGAA	1 cut(s)	666
AvaII	GGWCC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	511
BcgI	CGANNNNNNTGC	2 cut(s)	783, 817
BciT130I	CCWGG	2 cut(s)	161, 274
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	617, 883
BfmI	CTRYAG	1 cut(s)	182
BfrI	CTTAAG	2 cut(s)	335, 532
BglII	AGATCT	4 cut(s)	196, 399, 454, 702
BisI	GCNGC	2 cut(s)	525, 549
BlsI	GCNGC	2 cut(s)	526, 550
Bme1390I	CCNGG	2 cut(s)	161, 274
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	4 cut(s)	158, 331, 332, 585
BmrFI	CCNGG	2 cut(s)	161, 274
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	727
BmuI	ACTGGG	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	666
BpuEI	CTTGAG	4 cut(s)	215, 221, 424, 443
Bsa29I	ATCGAT	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	4 cut(s)	88, 273, 490, 514
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	2 cut(s)	161, 274
BseCI	ATCGAT	1 cut(s)	876
BseDI	CCNNGG	4 cut(s)	88, 273, 490, 514
BseGI	GGATG	2 cut(s)	645, 691
BseMII	CTCAG	1 cut(s)	713
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	511
BshVI	ATCGAT	1 cut(s)	876
BslFI	GGGAC	2 cut(s)	343, 580
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	343, 580
BsmI	GAATGC	1 cut(s)	689
Bso31I	GGTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	666
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	9 cut(s)	52, 196, 399, 444, 454, 702, 757, 873, 877
BspACI	CCGC	1 cut(s)	549
BspCNI	CTCAG	1 cut(s)	712
BspDI	ATCGAT	1 cut(s)	876
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	4 cut(s)	158, 331, 332, 585
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	3 cut(s)	47, 439, 752
BspT104I	TTCGAA	1 cut(s)	666
BspTI	CTTAAG	2 cut(s)	335, 532
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	551
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	4 cut(s)	88, 273, 490, 514
BssMI	GATC	9 cut(s)	52, 196, 399, 444, 454, 702, 757, 873, 877
BssT1I	CCWWGG	3 cut(s)	88, 490, 514
Bst2UI	CCWGG	2 cut(s)	161, 274
Bst4CI	ACNGT	4 cut(s)	35, 112, 215, 839
Bst6I	CTCTTC	1 cut(s)	594
BstAFI	CTTAAG	2 cut(s)	335, 532
BstAUI	TGTACA	1 cut(s)	744
BstBI	TTCGAA	1 cut(s)	666
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	2 cut(s)	105, 699
BstEII	GGTNACC	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	645, 691
BstKTI	GATC	9 cut(s)	55, 199, 402, 447, 457, 705, 760, 876, 880
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	9 cut(s)	52, 196, 399, 444, 454, 702, 757, 873, 877
BstNI	CCWGG	2 cut(s)	161, 274
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	159, 272
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	5 cut(s)	196, 399, 454, 702, 757
BstYI	RGATCY	5 cut(s)	196, 399, 454, 702, 757
Bsu15I	ATCGAT	1 cut(s)	876
BsuTUI	ATCGAT	1 cut(s)	876
BtsCI	GGATG	2 cut(s)	645, 691
BtsI	GCAGTG	1 cut(s)	553
BtsIMutI	CAGTG	2 cut(s)	309, 553
Cac8I	GCNNGC	1 cut(s)	546
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	330
ClaI	ATCGAT	1 cut(s)	876
CseI	GACGC	1 cut(s)	789
CsiI	ACCWGGT	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	745, 767
CviAII	CATG	3 cut(s)	256, 431, 580
CviQI	GTAC	2 cut(s)	745, 767
DdeI	CTNAG	2 cut(s)	105, 699
DpnI	GATC	9 cut(s)	54, 198, 401, 446, 456, 704, 759, 875, 879
DpnII	GATC	9 cut(s)	52, 196, 399, 444, 454, 702, 757, 873, 877
DraI	TTTAAA	1 cut(s)	831
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Eco130I	CCWWGG	3 cut(s)	88, 490, 514
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	213, 609
Eco91I	GGTNACC	1 cut(s)	509
EcoO109I	RGGNCCY	1 cut(s)	330
EcoO65I	GGTNACC	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	159, 272
EcoT14I	CCWWGG	3 cut(s)	88, 490, 514
ErhI	CCWWGG	3 cut(s)	88, 490, 514
FaeI	CATG	3 cut(s)	259, 434, 583
FaqI	GGGAC	2 cut(s)	343, 580
FatI	CATG	3 cut(s)	255, 430, 579
Fnu4HI	GCNGC	2 cut(s)	525, 549
FokI	GGATG	2 cut(s)	652, 678
Fsp4HI	GCNGC	2 cut(s)	525, 549
FspBI	CTAG	2 cut(s)	617, 883
GluI	GCNGC	2 cut(s)	525, 549
HgaI	GACGC	1 cut(s)	789
Hin1II	CATG	3 cut(s)	259, 434, 583
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HindIII	AAGCTT	1 cut(s)	167
HphI	GGTGA	2 cut(s)	313, 521
Hpy166II	GTNNAC	4 cut(s)	115, 321, 367, 622
Hpy188I	TCNGA	1 cut(s)	702
Hpy188III	TCNNGA	8 cut(s)	20, 200, 232, 256, 403, 587, 650, 761
Hpy8I	GTNNAC	4 cut(s)	115, 321, 367, 622
Hpy99I	CGWCG	1 cut(s)	805
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	4 cut(s)	35, 112, 215, 839
HpyCH4V	TGCA	3 cut(s)	184, 527, 687
HpyF3I	CTNAG	2 cut(s)	105, 699
Hsp92II	CATG	3 cut(s)	259, 434, 583
KflI	GGGWCCC	1 cut(s)	330
Kzo9I	GATC	9 cut(s)	52, 196, 399, 444, 454, 702, 757, 873, 877
LmnI	GCTCC	3 cut(s)	98, 589, 823
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	727
MabI	ACCWGGT	1 cut(s)	159
MaeI	CTAG	2 cut(s)	617, 883
MaeIII	GTNAC	4 cut(s)	307, 464, 509, 658
MalI	GATC	9 cut(s)	54, 198, 401, 446, 456, 704, 759, 875, 879
MbiI	CCGCTC	1 cut(s)	551
MboI	GATC	9 cut(s)	52, 196, 399, 444, 454, 702, 757, 873, 877
MboII	GAAGA	4 cut(s)	206, 394, 514, 611
MflI	RGATCY	5 cut(s)	196, 399, 454, 702, 757
MluCI	AATT	5 cut(s)	260, 301, 385, 773, 849
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	9 cut(s)	198, 236, 239, 334, 401, 447, 595, 801, 813
MseI	TTAA	5 cut(s)	336, 350, 533, 753, 830
MslI	CAYNNNNRTG	2 cut(s)	314, 429
MspCI	CTTAAG	2 cut(s)	335, 532
MspR9I	CCNGG	2 cut(s)	161, 274
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	2 cut(s)	161, 274
NdeII	GATC	9 cut(s)	52, 196, 399, 444, 454, 702, 757, 873, 877
NlaIII	CATG	3 cut(s)	259, 434, 583
NlaIV	GGNNCC	4 cut(s)	158, 331, 332, 585
NmuCI	GTSAC	4 cut(s)	307, 464, 509, 658
NspV	TTCGAA	1 cut(s)	666
PagI	TCATGA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	526, 550
PpuMI	RGGWCCY	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	159, 272
PspEI	GGTNACC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	159, 272
PspN4I	GGNNCC	4 cut(s)	158, 331, 332, 585
PspPI	GGNCC	1 cut(s)	330
PspPPI	RGGWCCY	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	5 cut(s)	196, 399, 454, 702, 757
RsaI	GTAC	2 cut(s)	746, 768
RsaNI	GTAC	2 cut(s)	745, 767
RseI	CAYNNNNRTG	2 cut(s)	314, 429
SaqAI	TTAA	5 cut(s)	336, 350, 533, 753, 830
SatI	GCNGC	2 cut(s)	525, 549
Sau3AI	GATC	9 cut(s)	52, 196, 399, 444, 454, 702, 757, 873, 877
Sau96I	GGNCC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	161, 274
SexAI	ACCWGGT	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	727
SfcI	CTRYAG	1 cut(s)	182
SfuI	TTCGAA	1 cut(s)	666
SinI	GGWCC	1 cut(s)	330
SmiMI	CAYNNNNRTG	2 cut(s)	314, 429
SmlI	CTYRAG	6 cut(s)	200, 230, 335, 403, 458, 532
SmoI	CTYRAG	6 cut(s)	200, 230, 335, 403, 458, 532
Sse9I	AATT	5 cut(s)	260, 301, 385, 773, 849
SsiI	CCGC	1 cut(s)	549
SspMI	CTAG	2 cut(s)	617, 883
StyD4I	CCNGG	2 cut(s)	159, 272
StyI	CCWWGG	3 cut(s)	88, 490, 514
TaaI	ACNGT	4 cut(s)	35, 112, 215, 839
TaqI	TCGA	2 cut(s)	666, 876
TasI	AATT	5 cut(s)	260, 301, 385, 773, 849
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	551
Tru1I	TTAA	5 cut(s)	336, 350, 533, 753, 830
Tru9I	TTAA	5 cut(s)	336, 350, 533, 753, 830
TscAI	CASTG	2 cut(s)	316, 560
TseFI	GTSAC	4 cut(s)	307, 464, 509, 658
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	4 cut(s)	307, 464, 509, 658
TspDTI	ATGAA	8 cut(s)	17, 96, 144, 150, 272, 568, 612, 870
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	2 cut(s)	316, 560
Vha464I	CTTAAG	2 cut(s)	335, 532
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	2 cut(s)	260, 773
XspI	CTAG	2 cut(s)	617, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.