FvH4_6g03470

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
1908539 .. 1912388
3850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03470.t1

Sequence Viewer

Length: 2199 bp
ATGAATGGTCTATCACATCTTGAACCGGAATACTCTGAGTTTGTTGAAGTAGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTAGGCAAAGGAGCTTCAAAGACAGTTTACAGAGCATTTGATGAGTATGATGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTATATGATTTTCTTCAAAGTCCTGAAGATCTTGAGAGGCTGTACTGTGAAATTCACCTCCTCAAGACACTGAAGCACAAGAACATTATGAAGTTCTACACTTCTTGGGTTGACACTTCAAAAAGAAACATCAATTTTGTAACTGAAATGTTCACTTCTGGGACTCTTAAACAGTACAGACTAAAGCACAAGAGAGTAAACATCAGAGCTGTCAAGCATTGGTGTAGGCAGATCTTGGGAGGGCTTTTGTATCTGCATAGCCATGACCCTCCTGTGATTCATAGAGATCTCAAATGTGACAACATCTTTATTAATGGAAATCAAGGGGAAGTGAAGATTGGTGATCTTGGTTTAGCAGCGATCTTAAGGAAATCACAACATGCTGCTCACTGTGTTGGGACACCAGAGTTCATGGCACCAGAAGTATATGAAGAGGAATATAATGAGCTAGTTGACATATATTCGTTTGGGATGTGCGTTTTGGAAATGGTGACTTTTGAATATCCTTATAGTGAATGCACTCATCCTGCTCAGATCTACAAGAAAGTTGTTTCAGGGAAAAAACCAGATGCTTTGTACAAAGTTAAAGATCCAGAAGTAAGAAGGTTTGTTGAGAAATGTTTGGCAACTGCATCTATGAGGCACTCTGCGATTGAGCTTTTGAATGATGATTTTCTCCGAGTAGATGAATGTGATTATGATTTGAGACCAGTGAATTATGGTAGGCAGCTTGATGACATAGGTCCTCTTGTAAGGCAGCCTGTTTACGAGGTTCATCAAAACAACAGTTCGTTTAGTAACGGATACTCGAATGGCTATGGTTTTGATTCCCAAAACGAATGGGGGTATCATCCTTTTGAGGTGGAATCAAGTGGAATAGAACTCTTTGAGCACCATGATGATGAGGAACATGGTGAAAATGTGGACATAAGTATTAGAGGGAAGCAAAAAGAAGATGGTAGCGTCATCCTGAGACTTAGAATTGCAGATAAAGAAGGACATATACGGAAGATTTATTTCCCATTTGACATTGAGATGGATACAGCACTGAGTGTTGCAACTGAAATGGTGGCAGAGCTGGATATCACTGATCATGATGTAACAGAAATTGCAGATATGATTGATGGGGAAATTGCAGATTTGGTACCAGGTTGGCAGTCCGGGCCAGGAATTGAGGAAACACCGCGTTTTTCCAATCAAAACATTTGTCAAAATTGTGTATCCAACCACACCTCTAGTGGTTCCTTCATGGAGTTTCTCTCTAACAACCCCGGGGCTACTCAAGGTTGTACACATGGATGTGCTTCAATGCATGGTCGTTTTGAGGAGATTACATATCAAGAAGATGAGTCGAAGCATCATGTAACAGAGGATATACCAAATGAATCAAGCCAATCAGACTGCCTACATTACCAAGAAATCTGGGGACAACATGAGAGTCGTGAGCTTAGTTCAGTGGGCTCTGGACAAAGCCATTCAGACGAAGAATATGAAAAAATGAATCAGTTAGTCACAGTCATGCAGGATCTTAAATTGGACAACACCATTGCTTCTGATGCAAGAAATTCTCTGCGGAACATATCCGGTTCACATCCCTTTTCCACAGTGCCCTCGATCTATTGTGACCTCTCAGATAATTCTGAGCATGAAATTCAAAAGGAATTGAGGTGGCTCAAGGCAAAGCACCAGATTGAGTTGAGGGAACTTAGAGATCAGCAGTTAGGACTTGTCTCAAAATCTTCAAATAAAGAACACGAAAGAGACAATGGGAGCTTATCATGTCTGGTATCAAACACCATGAAAGGGAACAACTATGATAGAAGTTCAAGCTTTACTTGCCTTCCTAGTCCTAATAAGAGCTGCCCCAGTTCGGAAACCCAAAGGGTCCGAAAATGTGAGGCGATTTTGGAGTGTCCTGATGCTGAAGAGGAGGATATGGGTACTGCCAACAGCTTCTACACCAAATCACAATTGCTTCCGCACTCTCTTTGCAGGACAGTTTCTCTCCCCGTTGATGCTGTTGATTCATAA

Protein Analysis

733

Amino Acids

83.38

Weight (kDa)

5.08

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 27 - 281 8.3e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 27 - 268 1.8e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1312
AccB1I GGYRCC 2 cut(s) 583, 1312
AccII CGCG 1 cut(s) 1354
AciI CCGC 3 cut(s) 1352, 1741, 2147
AclWI GGATC 3 cut(s) 47, 752, 1701
AcsI RAATTY 3 cut(s) 219, 1732, 1818
AcuI CTGAAG 3 cut(s) 213, 260, 2112
AdeI CACNNNGTG 1 cut(s) 1220
AfaI GTAC 6 cut(s) 212, 344, 746, 1314, 1459, 2110
AfiI CCNNNNNNNGG 2 cut(s) 1971, 2038
AflII CTTAAG 1 cut(s) 532
AjnI CCWGG 3 cut(s) 159, 1315, 1333
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
Alw21I GWGCWC 1 cut(s) 1062
Alw26I GTCTC 4 cut(s) 868, 1135, 1903, 1923
AlwI GGATC 3 cut(s) 47, 752, 1701
Ama87I CYCGRG 1 cut(s) 1439
AoxI GGCC 1 cut(s) 1331
ApeKI GCWGC 5 cut(s) 524, 551, 895, 925, 2028
ApoI RAATTY 3 cut(s) 219, 1732, 1818
ArsI GACNNNNNNTTYG 2 cut(s) 1360, 1392
AseI ATTAAT 1 cut(s) 480
Asp718I GGTACC 1 cut(s) 1312
AspA2I CCTAGG 1 cut(s) 88
AspS9I GGNCC 3 cut(s) 911, 1331, 2053
AsuC2I CCSGG 3 cut(s) 1330, 1440, 1441
AsuHPI GGTGA 4 cut(s) 215, 521, 670, 1094
AvaI CYCGRG 1 cut(s) 1439
AvaII GGWCC 2 cut(s) 911, 2053
AvrII CCTAGG 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 1779
BanI GGYRCC 2 cut(s) 583, 1312
BanII GRGCYC 1 cut(s) 1631
BarI GAAGNNNNNNTAC 2 cut(s) 1155, 1187
Bbv12I GWGCWC 1 cut(s) 1062
BbvI GCAGC 5 cut(s) 536, 538, 907, 937, 2015
BccI CCATC 4 cut(s) 131, 1118, 1198, 1286
BciT130I CCWGG 3 cut(s) 161, 1317, 1335
BciVI GTATCC 3 cut(s) 965, 1201, 1399
BclI TGATCA 1 cut(s) 1258
BcnI CCSGG 3 cut(s) 1330, 1440, 1441
BcoDI GTCTC 4 cut(s) 868, 1135, 1903, 1923
BfaI CTAG 4 cut(s) 89, 617, 1404, 2013
BfrI CTTAAG 1 cut(s) 532
BfuI GTATCC 3 cut(s) 965, 1201, 1399
BglII AGATCT 4 cut(s) 196, 399, 454, 702
BisI GCNGC 5 cut(s) 525, 552, 896, 926, 2029
BlnI CCTAGG 1 cut(s) 88
BlsI GCNGC 5 cut(s) 526, 553, 897, 927, 2030
Bme1390I CCNGG 6 cut(s) 161, 1317, 1330, 1335, 1440, 1441
Bme18I GGWCC 2 cut(s) 911, 2053
BmeT110I CYCGRG 1 cut(s) 1439
BmgT120I GGNCC 3 cut(s) 911, 1331, 2053
BmiI GGNNCC 5 cut(s) 158, 585, 1314, 1411, 2054
BmrFI CCNGG 6 cut(s) 161, 1317, 1330, 1335, 1440, 1441
BmrI ACTGGG 1 cut(s) 2028
BmsI GCATC 6 cut(s) 727, 809, 1534, 1714, 2077, 2173
BmuI ACTGGG 1 cut(s) 2028
BoxI GACNNNNGTC 1 cut(s) 909
BplI GAGNNNNNCTC 2 cut(s) 1412, 1444
BpuEI CTTGAG 4 cut(s) 215, 221, 1434, 1826
BpuMI CCSGG 3 cut(s) 1330, 1440, 1441
BsaI GGTCTC 1 cut(s) 868
BsaJI CCNNGG 4 cut(s) 88, 1438, 1439, 1440
BsaWI WCCGGW 2 cut(s) 25, 1751
Bsc4I CCNNNNNNNGG 2 cut(s) 1971, 2038
Bse1I ACTGG 3 cut(s) 64, 878, 2034
Bse3DI GCAATG 1 cut(s) 1713
BseBI CCWGG 3 cut(s) 161, 1317, 1335
BseDI CCNNGG 4 cut(s) 88, 1438, 1439, 1440
BseGI GGATG 6 cut(s) 645, 691, 1018, 1134, 1472, 1759
BseLI CCNNNNNNNGG 2 cut(s) 1971, 2038
BseMI GCAATG 1 cut(s) 1713
BseMII CTCAG 6 cut(s) 27, 713, 1130, 1208, 1800, 1812
BseNI ACTGG 3 cut(s) 64, 878, 2034
BseRI GAGGAG 3 cut(s) 218, 1508, 2111
BseSI GKGCMC 1 cut(s) 1779
BseXI GCAGC 5 cut(s) 536, 538, 907, 937, 2015
Bsh1236I CGCG 1 cut(s) 1354
BshFI GGCC 1 cut(s) 1333
BshNI GGYRCC 2 cut(s) 583, 1312
BsiHKAI GWGCWC 1 cut(s) 1062
BsiHKCI CYCGRG 1 cut(s) 1439
BsiSI CCGG 4 cut(s) 26, 1329, 1440, 1752
BslFI GGGAC 3 cut(s) 343, 580, 1608
BslI CCNNNNNNNGG 2 cut(s) 1971, 2038
BsmAI GTCTC 4 cut(s) 868, 1135, 1903, 1923
BsmFI GGGAC 3 cut(s) 343, 580, 1608
BsmI GAATGC 1 cut(s) 689
BsnI GGCC 1 cut(s) 1333
Bso31I GGTCTC 1 cut(s) 868
BsoBI CYCGRG 1 cut(s) 1439
Bsp1286I GDGCHC 3 cut(s) 1062, 1631, 1779
Bsp1407I TGTACA 2 cut(s) 744, 1457
BspACI CCGC 3 cut(s) 1352, 1741, 2147
BspANI GGCC 1 cut(s) 1333
BspCNI CTCAG 6 cut(s) 28, 712, 1131, 1209, 1801, 1811
BspFNI CGCG 1 cut(s) 1354
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 5 cut(s) 158, 585, 1314, 1411, 2054
BspPI GGATC 3 cut(s) 47, 752, 1701
BspT107I GGYRCC 2 cut(s) 583, 1312
BspTI CTTAAG 1 cut(s) 532
BspTNI GGTCTC 1 cut(s) 868
BsrDI GCAATG 1 cut(s) 1713
BsrGI TGTACA 2 cut(s) 744, 1457
BsrI ACTGG 3 cut(s) 64, 878, 2034
BssECI CCNNGG 4 cut(s) 88, 1438, 1439, 1440
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 3 cut(s) 161, 1317, 1335
Bst4CI ACNGT 8 cut(s) 112, 215, 342, 560, 956, 1684, 1774, 2167
Bst6I CTCTTC 2 cut(s) 594, 2088
BstAFI CTTAAG 1 cut(s) 532
BstAUI TGTACA 2 cut(s) 744, 1457
BstDEI CTNAG 9 cut(s) 36, 699, 1139, 1145, 1217, 1616, 1798, 1809, 1874
BstF5I GGATG 6 cut(s) 645, 691, 1018, 1134, 1472, 1759
BstFNI CGCG 1 cut(s) 1354
BstMAI GTCTC 4 cut(s) 868, 1135, 1903, 1923
BstMWI GCNNNNNNNGC 4 cut(s) 69, 1330, 1724, 2004
BstNI CCWGG 3 cut(s) 161, 1317, 1335
BstNSI RCATGY 1 cut(s) 551
BstPAI GACNNNNGTC 1 cut(s) 909
BstSCI CCNGG 6 cut(s) 159, 1315, 1328, 1333, 1438, 1439
BstSLI GKGCMC 1 cut(s) 1779
BstUI CGCG 1 cut(s) 1354
BstV1I GCAGC 5 cut(s) 536, 538, 907, 937, 2015
BstX2I RGATCY 7 cut(s) 52, 196, 399, 454, 702, 757, 1693
BstYI RGATCY 7 cut(s) 52, 196, 399, 454, 702, 757, 1693
BsuI GTATCC 3 cut(s) 965, 1201, 1399
BsuRI GGCC 1 cut(s) 1333
BtsCI GGATG 6 cut(s) 645, 691, 1018, 1134, 1472, 1759
BtsIMutI CAGTG 7 cut(s) 236, 556, 885, 1214, 1254, 1629, 1779
CciI TCATGA 1 cut(s) 1261
Cfr13I GGNCC 3 cut(s) 911, 1331, 2053
Cfr9I CCCGGG 1 cut(s) 1439
CseI GACGC 1 cut(s) 1120
CsiI ACCWGGT 2 cut(s) 159, 1315
Csp6I GTAC 6 cut(s) 211, 343, 745, 1313, 1458, 2109
CviQI GTAC 6 cut(s) 211, 343, 745, 1313, 1458, 2109
DdeI CTNAG 9 cut(s) 36, 699, 1139, 1145, 1217, 1616, 1798, 1809, 1874
DraIII CACNNNGTG 1 cut(s) 1220
Eam1104I CTCTTC 2 cut(s) 594, 2088
EarI CTCTTC 2 cut(s) 594, 2088
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 1631
Eco31I GGTCTC 1 cut(s) 868
Eco32I GATATC 1 cut(s) 1252
Eco47I GGWCC 2 cut(s) 911, 2053
Eco57I CTGAAG 3 cut(s) 213, 260, 2112
Eco88I CYCGRG 1 cut(s) 1439
EcoO109I RGGNCCY 1 cut(s) 911
EcoRII CCWGG 3 cut(s) 159, 1315, 1333
EcoRV GATATC 1 cut(s) 1252
EcoT14I CCWWGG 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 1482
EcoT38I GRGCYC 1 cut(s) 1631
ErhI CCWWGG 1 cut(s) 88
FalI AAGNNNNNCTT 2 cut(s) 1987, 2019
FaqI GGGAC 3 cut(s) 343, 580, 1608
FbaI TGATCA 1 cut(s) 1258
Fnu4HI GCNGC 5 cut(s) 525, 552, 896, 926, 2029
FokI GGATG 6 cut(s) 652, 678, 1005, 1121, 1479, 1746
FriOI GRGCYC 1 cut(s) 1631
Fsp4HI GCNGC 5 cut(s) 525, 552, 896, 926, 2029
FspBI CTAG 4 cut(s) 89, 617, 1404, 2013
GluI GCNGC 5 cut(s) 525, 552, 896, 926, 2029
HaeIII GGCC 1 cut(s) 1333
HapII CCGG 4 cut(s) 26, 1329, 1440, 1752
HgaI GACGC 1 cut(s) 1120
HincII GTYRAC 2 cut(s) 280, 622
HindII GTYRAC 2 cut(s) 280, 622
HindIII AAGCTT 1 cut(s) 1996
HinfI GANTC 9 cut(s) 331, 445, 995, 1034, 1517, 1553, 1606, 1669, 2192
HpaII CCGG 4 cut(s) 26, 1329, 1440, 1752
HphI GGTGA 4 cut(s) 215, 521, 670, 1094
Hpy166II GTNNAC 9 cut(s) 115, 280, 321, 367, 622, 934, 1093, 1460, 1757
Hpy8I GTNNAC 9 cut(s) 115, 280, 321, 367, 622, 934, 1093, 1460, 1757
HpyAV CCTTC 4 cut(s) 765, 1157, 1423, 2018
HpyCH4III ACNGT 8 cut(s) 112, 215, 342, 560, 956, 1684, 1774, 2167
HpyF10VI GCNNNNNNNGC 4 cut(s) 69, 1330, 1724, 2004
HpyF3I CTNAG 9 cut(s) 36, 699, 1139, 1145, 1217, 1616, 1798, 1809, 1874
KpnI GGTACC 1 cut(s) 1316
Ksp22I TGATCA 1 cut(s) 1258
LmnI GCTCC 2 cut(s) 98, 1938
Lsp1109I GCAGC 5 cut(s) 536, 538, 907, 937, 2015
LweI GCATC 6 cut(s) 727, 809, 1534, 1714, 2077, 2173
MabI ACCWGGT 2 cut(s) 159, 1315
MaeI CTAG 4 cut(s) 89, 617, 1404, 2013
MaeIII GTNAC 8 cut(s) 307, 464, 658, 965, 1267, 1531, 1678, 1790
MfeI CAATTG 1 cut(s) 2138
MflI RGATCY 7 cut(s) 52, 196, 399, 454, 702, 757, 1693
MhlI GDGCHC 3 cut(s) 1062, 1631, 1779
MlyI GAGTC 3 cut(s) 325, 1526, 1615
MmeI TCCRAC 2 cut(s) 80, 1416
Mph1103I ATGCAT 1 cut(s) 1482
MseI TTAA 5 cut(s) 336, 480, 533, 753, 1698
MslI CAYNNNNRTG 7 cut(s) 429, 1065, 1068, 1202, 1465, 1467, 1685
MspCI CTTAAG 1 cut(s) 532
MspI CCGG 4 cut(s) 26, 1329, 1440, 1752
MspR9I CCNGG 6 cut(s) 161, 1317, 1330, 1335, 1440, 1441
MunI CAATTG 1 cut(s) 2138
Mva1269I GAATGC 1 cut(s) 689
MvaI CCWGG 3 cut(s) 161, 1317, 1335
MvnI CGCG 1 cut(s) 1354
MwoI GCNNNNNNNGC 4 cut(s) 69, 1330, 1724, 2004
NciI CCSGG 3 cut(s) 1330, 1440, 1441
NlaIV GGNNCC 5 cut(s) 158, 585, 1314, 1411, 2054
NmuCI GTSAC 4 cut(s) 464, 658, 1678, 1790
NsiI ATGCAT 1 cut(s) 1482
NspI RCATGY 1 cut(s) 551
PagI TCATGA 1 cut(s) 1261
PctI GAATGC 1 cut(s) 689
PfeI GAWTC 6 cut(s) 445, 995, 1034, 1553, 1669, 2192
PkrI GCNGC 5 cut(s) 526, 553, 897, 927, 2030
PleI GAGTC 3 cut(s) 325, 1525, 1614
PpsI GAGTC 3 cut(s) 325, 1525, 1614
PpuMI RGGWCCY 1 cut(s) 911
PshAI GACNNNNGTC 1 cut(s) 909
PshBI ATTAAT 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 911
Psp6I CCWGG 3 cut(s) 159, 1315, 1333
PspGI CCWGG 3 cut(s) 159, 1315, 1333
PspN4I GGNNCC 5 cut(s) 158, 585, 1314, 1411, 2054
PspPI GGNCC 3 cut(s) 911, 1331, 2053
PspPPI RGGWCCY 1 cut(s) 911
PsuI RGATCY 7 cut(s) 52, 196, 399, 454, 702, 757, 1693
RsaI GTAC 6 cut(s) 212, 344, 746, 1314, 1459, 2110
RsaNI GTAC 6 cut(s) 211, 343, 745, 1313, 1458, 2109
RseI CAYNNNNRTG 7 cut(s) 429, 1065, 1068, 1202, 1465, 1467, 1685
SaqAI TTAA 5 cut(s) 336, 480, 533, 753, 1698
SatI GCNGC 5 cut(s) 525, 552, 896, 926, 2029
Sau96I GGNCC 3 cut(s) 911, 1331, 2053
SchI GAGTC 3 cut(s) 325, 1526, 1615
ScrFI CCNGG 6 cut(s) 161, 1317, 1330, 1335, 1440, 1441
SduI GDGCHC 3 cut(s) 1062, 1631, 1779
SexAI ACCWGGT 2 cut(s) 159, 1315
SfaNI GCATC 6 cut(s) 727, 809, 1534, 1714, 2077, 2173
SinI GGWCC 2 cut(s) 911, 2053
SmaI CCCGGG 1 cut(s) 1441
SmiMI CAYNNNNRTG 7 cut(s) 429, 1065, 1068, 1202, 1465, 1467, 1685
SmlI CTYRAG 5 cut(s) 200, 230, 532, 1449, 1841
SmoI CTYRAG 5 cut(s) 200, 230, 532, 1449, 1841
SsiI CCGC 3 cut(s) 1352, 1741, 2147
SspMI CTAG 4 cut(s) 89, 617, 1404, 2013
StyD4I CCNGG 6 cut(s) 159, 1315, 1328, 1333, 1438, 1439
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 8 cut(s) 112, 215, 342, 560, 956, 1684, 1774, 2167
TaqI TCGA 3 cut(s) 977, 1520, 1781
TatI WGTACW 4 cut(s) 210, 342, 744, 1457
TfiI GAWTC 6 cut(s) 445, 995, 1034, 1553, 1669, 2192
Tru1I TTAA 5 cut(s) 336, 480, 533, 753, 1698
Tru9I TTAA 5 cut(s) 336, 480, 533, 753, 1698
TscAI CASTG 7 cut(s) 243, 563, 885, 1221, 1261, 1629, 1779
TseFI GTSAC 4 cut(s) 464, 658, 1678, 1790
TseI GCWGC 5 cut(s) 524, 551, 895, 925, 2028
Tsp45I GTSAC 4 cut(s) 464, 658, 1678, 1790
TspGWI ACGGA 2 cut(s) 984, 1189
TspMI CCCGGG 1 cut(s) 1439
TspRI CASTG 7 cut(s) 243, 563, 885, 1221, 1261, 1629, 1779
Vha464I CTTAAG 1 cut(s) 532
VpaK11BI GGWCC 2 cut(s) 911, 2053
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 3 cut(s) 219, 1732, 1818
XceI RCATGY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 1403
XmaI CCCGGG 1 cut(s) 1439
XmaJI CCTAGG 1 cut(s) 88
XspI CTAG 4 cut(s) 89, 617, 1404, 2013
Zsp2I ATGCAT 1 cut(s) 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.