AT5G38030

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
15171143 .. 15175566
4424 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38030.1

Sequence Viewer

Length: 1497 bp
ATGGAAGAAGACAAAATTCTTACGGAGACCCTTCTATCTGCGGCGGAAGAACCACCTGCTCTTCCTTTCTCATCCGTGGAAGATATTCCTCCGATCACCACCGTTGGTGGCTTCGTCAAGGAGTTCAACGTGGAGGTCAAAAAGCTATGGTACTTGGCAGGGCCAGCCATTTTCATGTCTATAACCCAATATTCTCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAGCACCATCGCTCTCGCAGCGGTCTCCGTTGAAAACTCGGTCATCGCTGGATTCTCATTTGGTGTCATGCTTGGAATGGGAAGCGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCAATGCTTGGCGTTTACTTGCAACGATCATGGGTGATACTAAACGTGACCGCGGTTATTCTCTCGCTTCTTTACATCTTCGCCGCTCCAATCCTCGCGTTCATCGGTCAAACGCCGGCGATCTCTAGCGCCACGGGAATATTTTCCATCTACATGATCCCTCAGATCTTTGCTTACGCTGTTAATTACCCAACGGCTAAGTTCTTGCAATCACAAAGCAAAATCATGGTGATGGCTGCGATATCAGCGGTTGCACTTGTTCTACACGTGCTCCTCACGTGGTTTGTCATTGAGGGGCTCCAGTGGGGCACGGCGGGTCTAGCCGTCGTGCTCAACGCCTCGTGGTGGTTCATTGTCGTGGCGCAGCTTGTGTACATATTTAGTGGTACATGCGGTGAAGCTTGGTCTGGATTCTCATGGGAAGCTTTTCATAATTTGTGGAGTTTCGTCAGATTATCTTTGGCTTCTGCTGTTATGCTCTGTTTGGAGGTATGGTATCTTATGGCAGTCATATTATTTGCTGGATATTTGAAGAATGCTGAGATCTCCGTAGCTGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCAATGATTGCTATTGGGATGAACGCAGCCGTAAGTGTGAGAGTGTCTAATGAATTAGGAGCAAAACATCCAAGAACCGCAAAATTCTCACTACTAGTGGCAGTGATAACATCTACAGTGATCGGACTTGCTATATCAATTGCTCTACTCATCTTTAGAGATAAATATCCATCGTTATTTGTGGGAGACGAAGAAGTTATCATTGTTGTTAAAGATCTTACACCAATACTCGCAGTCTCTATTGTCATCAACAATGTCCAACCTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGCAAGCAGTTGTGGCATACGTTAACATAGTATGTTATTACGTGTTTGGAATCCCATTTGGTCTGTTACTAGGCTACAAGCTTAACTTTGGTGTAATGGGAATCTGGTGCGGAATGTTGACAGGAACCGTGGTTCAGACAATAGTCTTAACATGGATGATCTGTAGAACAAATTGGGACACAGAGGCTGCAATGGCTGAGGGTAGGATAAGAGAGTGGGGAGGAGAAGTATCAGATCAACTCTTAAACTAA

Protein Analysis

498

Amino Acids

53.65

Weight (kDa)

5.11

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 55 - 214 1.3e-31 MatE
MatE PF01554 276 - 437 1e-36 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 64
Acc36I ACCTGC 1 cut(s) 64
AccBSI CCGCTC 1 cut(s) 446
AccII CGCG 3 cut(s) 317, 413, 458
AclWI GGATC 1 cut(s) 511
AcsI RAATTY 2 cut(s) 15, 1034
AcvI CACGTG 2 cut(s) 628, 639
AfaI GTAC 3 cut(s) 152, 734, 748
AfiI CCNNNNNNNGG 1 cut(s) 705
AflIII ACRYGT 2 cut(s) 625, 1287
AgsI TTSAA 3 cut(s) 127, 263, 892
AhlI ACTAGT 1 cut(s) 1045
AloI GAACNNNNNNTCC 2 cut(s) 1362, 1394
AluBI AGCT 7 cut(s) 145, 727, 761, 785, 914, 1241, 1327
AluI AGCT 7 cut(s) 145, 727, 761, 785, 914, 1241, 1327
Alw21I GWGCWC 2 cut(s) 633, 693
Alw26I GTCTC 4 cut(s) 20, 259, 1131, 1192
AlwI GGATC 1 cut(s) 511
AlwNI CAGNNNCTG 1 cut(s) 1433
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 7 cut(s) 203, 248, 596, 724, 914, 977, 1433
ApoI RAATTY 2 cut(s) 15, 1034
Asp700I GAANNNNTTC 3 cut(s) 84, 502, 786
AspLEI GCGC 4 cut(s) 203, 317, 491, 724
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 4 cut(s) 88, 406, 601, 767
BaeGI GKGCMC 1 cut(s) 671
BanII GRGCYC 1 cut(s) 660
BauI CACGAG 1 cut(s) 700
BbrPI CACGTG 2 cut(s) 628, 639
BbsI GAAGAC 2 cut(s) 15, 208
Bbv12I GWGCWC 2 cut(s) 633, 693
BbvCI CCTCAGC 1 cut(s) 1443
BbvI GCAGC 7 cut(s) 190, 260, 583, 736, 901, 989, 1420
BccI CCATC 7 cut(s) 245, 515, 586, 932, 939, 1129, 1239
BceAI ACGGC 4 cut(s) 570, 668, 687, 965
BcoDI GTCTC 4 cut(s) 20, 259, 1131, 1192
BcuI ACTAGT 1 cut(s) 1045
BfaI CTAG 4 cut(s) 486, 680, 1046, 1316
BfmI CTRYAG 2 cut(s) 1065, 1408
BfoI RGCGCY 2 cut(s) 204, 492
BfuAI ACCTGC 1 cut(s) 64
BglII AGATCT 3 cut(s) 525, 903, 1165
BisI GCNGC 9 cut(s) 42, 204, 249, 444, 597, 725, 915, 978, 1434
BlsI GCNGC 9 cut(s) 43, 205, 250, 445, 598, 726, 916, 979, 1435
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 659, 1372
BoxI GACNNNNGTC 1 cut(s) 1388
BpiI GAAGAC 2 cut(s) 15, 208
BpmI CTGGAG 1 cut(s) 644
Bpu10I CCTNAGC 1 cut(s) 1443
BsaAI YACGTR 3 cut(s) 628, 639, 1288
BsaBI GATNNNNATC 1 cut(s) 1116
BsaI GGTCTC 2 cut(s) 20, 259
BsaJI CCNNGG 4 cut(s) 75, 411, 492, 1374
BsaXI ACNNNNNCTCC 6 cut(s) 615, 645, 839, 869, 1458, 1488
Bsc4I CCNNNNNNNGG 1 cut(s) 705
Bse118I RCCGGY 1 cut(s) 475
Bse1I ACTGG 1 cut(s) 661
Bse3DI GCAATG 2 cut(s) 960, 1443
Bse8I GATNNNNATC 1 cut(s) 1116
BseDI CCNNGG 4 cut(s) 75, 411, 492, 1374
BseGI GGATG 6 cut(s) 71, 950, 975, 1018, 1250, 1407
BseJI GATNNNNATC 1 cut(s) 1116
BseLI CCNNNNNNNGG 1 cut(s) 705
BseMI GCAATG 2 cut(s) 960, 1443
BseMII CTCAG 4 cut(s) 224, 536, 891, 1434
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 2 cut(s) 623, 1482
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 7 cut(s) 190, 260, 583, 736, 901, 989, 1420
Bsh1236I CGCG 3 cut(s) 317, 413, 458
BshFI GGCC 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 633, 693
BsiSI CCGG 2 cut(s) 222, 476
BslFI GGGAC 1 cut(s) 1436
BslI CCNNNNNNNGG 1 cut(s) 705
BsmAI GTCTC 4 cut(s) 20, 259, 1131, 1192
BsmBI CGTCTC 1 cut(s) 1131
BsmFI GGGAC 1 cut(s) 1436
BsmI GAATGC 1 cut(s) 901
BsnI GGCC 1 cut(s) 163
Bso31I GGTCTC 2 cut(s) 20, 259
Bsp1286I GDGCHC 4 cut(s) 633, 660, 671, 693
Bsp1407I TGTACA 1 cut(s) 732
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 4 cut(s) 223, 535, 892, 1435
BspFNI CGCG 3 cut(s) 317, 413, 458
BspLI GGNNCC 2 cut(s) 659, 1372
BspMI ACCTGC 1 cut(s) 64
BspPI GGATC 1 cut(s) 511
BspQI GCTCTTC 1 cut(s) 66
BspTNI GGTCTC 2 cut(s) 20, 259
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 2 cut(s) 960, 1443
BsrFI RCCGGY 1 cut(s) 475
BsrGI TGTACA 1 cut(s) 732
BsrI ACTGG 1 cut(s) 661
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 4 cut(s) 75, 411, 492, 1374
BssSI CACGAG 1 cut(s) 700
Bst2BI CACGAG 1 cut(s) 700
Bst4CI ACNGT 3 cut(s) 103, 1069, 1375
Bst6I CTCTTC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 959
BstAUI TGTACA 1 cut(s) 732
BstBAI YACGTR 3 cut(s) 628, 639, 1288
BstC8I GCNNGC 3 cut(s) 165, 477, 1251
BstDEI CTNAG 5 cut(s) 210, 522, 558, 900, 1443
BstDSI CCRYGG 4 cut(s) 75, 411, 492, 1374
BstF5I GGATG 6 cut(s) 71, 950, 975, 1018, 1250, 1407
BstFNI CGCG 3 cut(s) 317, 413, 458
BstH2I RGCGCY 2 cut(s) 204, 492
BstHHI GCGC 4 cut(s) 203, 317, 491, 724
BstMAI GTCTC 4 cut(s) 20, 259, 1131, 1192
BstMWI GCNNNNNNNGC 9 cut(s) 164, 248, 347, 605, 680, 959, 1238, 1259, 1439
BstNSI RCATGY 1 cut(s) 753
BstPAI GACNNNNGTC 1 cut(s) 1388
BstSFI CTRYAG 2 cut(s) 1065, 1408
BstSLI GKGCMC 1 cut(s) 671
BstUI CGCG 3 cut(s) 317, 413, 458
BstV1I GCAGC 7 cut(s) 190, 260, 583, 736, 901, 989, 1420
BstV2I GAAGAC 2 cut(s) 15, 208
BstX2I RGATCY 3 cut(s) 525, 903, 1165
BstYI RGATCY 3 cut(s) 525, 903, 1165
BsuRI GGCC 1 cut(s) 163
BtgI CCRYGG 4 cut(s) 75, 411, 492, 1374
BtgZI GCGATG 2 cut(s) 223, 259
BtsCI GGATG 6 cut(s) 71, 950, 975, 1018, 1250, 1407
BtsI GCAGTG 1 cut(s) 1059
BtsIMutI CAGTG 3 cut(s) 668, 1059, 1074
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 3 cut(s) 165, 477, 1251
CaiI CAGNNNCTG 1 cut(s) 1433
CfoI GCGC 4 cut(s) 203, 317, 491, 724
Cfr10I RCCGGY 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 161
Cfr42I CCGCGG 1 cut(s) 414
Csp6I GTAC 3 cut(s) 151, 733, 747
CviAII CATG 9 cut(s) 175, 298, 390, 514, 586, 750, 777, 931, 1398
CviQI GTAC 3 cut(s) 151, 733, 747
DdeI CTNAG 5 cut(s) 210, 522, 558, 900, 1443
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 660
Eco31I GGTCTC 2 cut(s) 20, 259
Eco32I GATATC 1 cut(s) 603
Eco72I CACGTG 2 cut(s) 628, 639
EcoRV GATATC 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 660
Esp3I CGTCTC 1 cut(s) 1131
FaeI CATG 9 cut(s) 178, 301, 393, 517, 589, 753, 780, 934, 1401
FalI AAGNNNNNCTT 2 cut(s) 1316, 1348
FaqI GGGAC 1 cut(s) 1436
FatI CATG 9 cut(s) 174, 297, 389, 513, 585, 749, 776, 930, 1397
FauI CCCGC 1 cut(s) 667
Fnu4HI GCNGC 9 cut(s) 42, 204, 249, 444, 597, 725, 915, 978, 1434
FokI GGATG 6 cut(s) 58, 957, 982, 1005, 1257, 1414
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 9 cut(s) 42, 204, 249, 444, 597, 725, 915, 978, 1434
FspBI CTAG 4 cut(s) 486, 680, 1046, 1316
GlaI GCGC 4 cut(s) 202, 316, 490, 723
GluI GCNGC 9 cut(s) 42, 204, 249, 444, 597, 725, 915, 978, 1434
GsuI CTGGAG 1 cut(s) 644
HaeII RGCGCY 2 cut(s) 204, 492
HaeIII GGCC 1 cut(s) 163
HapII CCGG 2 cut(s) 222, 476
HhaI GCGC 4 cut(s) 203, 317, 491, 724
Hin1II CATG 9 cut(s) 178, 301, 393, 517, 589, 753, 780, 934, 1401
Hin6I GCGC 4 cut(s) 201, 315, 489, 722
HinP1I GCGC 4 cut(s) 201, 315, 489, 722
HincII GTYRAC 2 cut(s) 1270, 1365
HindII GTYRAC 2 cut(s) 1270, 1365
HindIII AAGCTT 3 cut(s) 759, 783, 1325
HinfI GANTC 4 cut(s) 282, 771, 1296, 1347
HpaI GTTAAC 1 cut(s) 1270
HpaII CCGG 2 cut(s) 222, 476
HphI GGTGA 4 cut(s) 88, 406, 601, 767
Hpy166II GTNNAC 5 cut(s) 335, 376, 733, 1270, 1365
Hpy188I TCNGA 6 cut(s) 93, 525, 812, 1076, 1383, 1480
Hpy188III TCNNGA 1 cut(s) 768
Hpy8I GTNNAC 5 cut(s) 335, 376, 733, 1270, 1365
Hpy99I CGWCG 1 cut(s) 689
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 3 cut(s) 103, 1069, 1375
HpyCH4IV ACGT 6 cut(s) 129, 405, 627, 638, 1266, 1287
HpyCH4V TGCA 6 cut(s) 382, 568, 614, 930, 953, 1436
HpyF10VI GCNNNNNNNGC 9 cut(s) 164, 248, 347, 605, 680, 959, 1238, 1259, 1439
HpyF3I CTNAG 5 cut(s) 210, 522, 558, 900, 1443
HpySE526I ACGT 6 cut(s) 129, 405, 627, 638, 1266, 1287
Hsp92II CATG 9 cut(s) 178, 301, 393, 517, 589, 753, 780, 934, 1401
HspAI GCGC 4 cut(s) 201, 315, 489, 722
KroI GCCGGC 1 cut(s) 475
KroNI GCCGGC 1 cut(s) 477
KspAI GTTAAC 1 cut(s) 1270
KspI CCGCGG 1 cut(s) 414
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 6 cut(s) 347, 451, 636, 663, 1010, 1238
Lsp1109I GCAGC 7 cut(s) 190, 260, 583, 736, 901, 989, 1420
MaeI CTAG 4 cut(s) 486, 680, 1046, 1316
MaeII ACGT 6 cut(s) 129, 405, 627, 638, 1266, 1287
MaeIII GTNAC 2 cut(s) 406, 1311
MbiI CCGCTC 1 cut(s) 446
MboII GAAGA 9 cut(s) 17, 20, 53, 59, 92, 208, 430, 904, 1154
MfeI CAATTG 1 cut(s) 1089
MflI RGATCY 3 cut(s) 525, 903, 1165
MhlI GDGCHC 4 cut(s) 633, 660, 671, 693
MluCI AATT 8 cut(s) 15, 356, 544, 793, 1004, 1034, 1089, 1417
MmeI TCCRAC 1 cut(s) 1234
MreI CGCCGGCG 1 cut(s) 475
MroNI GCCGGC 1 cut(s) 475
MroXI GAANNNNTTC 3 cut(s) 84, 502, 786
MseI TTAA 6 cut(s) 543, 1161, 1269, 1329, 1394, 1490
MslI CAYNNNNRTG 5 cut(s) 173, 512, 590, 716, 929
MspA1I CMGCKG 3 cut(s) 251, 413, 608
MspI CCGG 2 cut(s) 222, 476
MunI CAATTG 1 cut(s) 1089
Mva1269I GAATGC 1 cut(s) 901
MvnI CGCG 3 cut(s) 317, 413, 458
MwoI GCNNNNNNNGC 9 cut(s) 164, 248, 347, 605, 680, 959, 1238, 1259, 1439
NaeI GCCGGC 1 cut(s) 477
NgoMIV GCCGGC 1 cut(s) 475
NlaIII CATG 9 cut(s) 178, 301, 393, 517, 589, 753, 780, 934, 1401
NlaIV GGNNCC 2 cut(s) 659, 1372
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 1 cut(s) 753
PaqCI CACCTGC 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 66
PctI GAATGC 1 cut(s) 901
PdiI GCCGGC 1 cut(s) 477
PdmI GAANNNNTTC 3 cut(s) 84, 502, 786
PfeI GAWTC 4 cut(s) 282, 771, 1296, 1347
PkrI GCNGC 9 cut(s) 43, 205, 250, 445, 598, 726, 916, 979, 1435
PmaCI CACGTG 2 cut(s) 628, 639
PmlI CACGTG 2 cut(s) 628, 639
Ppu21I YACGTR 3 cut(s) 628, 639, 1288
PshAI GACNNNNGTC 1 cut(s) 1388
PspCI CACGTG 2 cut(s) 628, 639
PspN4I GGNNCC 2 cut(s) 659, 1372
PspPI GGNCC 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 1433
PsuI RGATCY 3 cut(s) 525, 903, 1165
RsaI GTAC 3 cut(s) 152, 734, 748
RsaNI GTAC 3 cut(s) 151, 733, 747
RseI CAYNNNNRTG 5 cut(s) 173, 512, 590, 716, 929
SacII CCGCGG 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 6 cut(s) 543, 1161, 1269, 1329, 1394, 1490
SatI GCNGC 9 cut(s) 42, 204, 249, 444, 597, 725, 915, 978, 1434
Sau96I GGNCC 1 cut(s) 161
SduI GDGCHC 4 cut(s) 633, 660, 671, 693
SfcI CTRYAG 2 cut(s) 1065, 1408
Sfr303I CCGCGG 1 cut(s) 414
SgrAI CRCCGGYG 1 cut(s) 475
SgrBI CCGCGG 1 cut(s) 414
SmiMI CAYNNNNRTG 5 cut(s) 173, 512, 590, 716, 929
SpeI ACTAGT 1 cut(s) 1045
Sse9I AATT 8 cut(s) 15, 356, 544, 793, 1004, 1034, 1089, 1417
SspI AATATT 2 cut(s) 191, 501
SspMI CTAG 4 cut(s) 486, 680, 1046, 1316
TaaI ACNGT 3 cut(s) 103, 1069, 1375
TaiI ACGT 6 cut(s) 132, 408, 630, 641, 1269, 1290
TaqII GACCGA 2 cut(s) 259, 455
TasI AATT 8 cut(s) 15, 356, 544, 793, 1004, 1034, 1089, 1417
TatI WGTACW 1 cut(s) 732
TauI GCSGC 2 cut(s) 44, 446
TfiI GAWTC 4 cut(s) 282, 771, 1296, 1347
Tru1I TTAA 6 cut(s) 543, 1161, 1269, 1329, 1394, 1490
Tru9I TTAA 6 cut(s) 543, 1161, 1269, 1329, 1394, 1490
TscAI CASTG 3 cut(s) 668, 1059, 1074
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 7 cut(s) 203, 248, 596, 724, 914, 977, 1433
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 7 cut(s) 163, 451, 700, 779, 947, 986, 1017
TspGWI ACGGA 4 cut(s) 38, 64, 247, 898
TspRI CASTG 3 cut(s) 668, 1059, 1074
XapI RAATTY 2 cut(s) 15, 1034
XceI RCATGY 1 cut(s) 753
XmnI GAANNNNTTC 3 cut(s) 84, 502, 786
XspI CTAG 4 cut(s) 486, 680, 1046, 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.