Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003189

Physical Location & Seq

Genomic Coordinates Forward (+)

43498593 .. 43501353

Gene Structure 2761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0263300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCTACAAGTAGGGGTGCATTTTAGGGCATATGGAAGTGGAAAAGAAGATGCTCCCCTATGTGATGTTGCTGGGTTTGAGAATTGCAGGATGAAGTTGTTGCGACATGTATCATTTGTAGATTGCCCGGGCCACGATATTCTCATGGCTACTATGCTGAATGGGGCTGCAATTATGGACGGGGCATTGCTTCTGATTGCTGCAAATGAAAGCTGTCCCCAGCCACAAACGTCTGAGCATCTTGCTGCTGTGGAAATTATGCGTCTTCAGCATATCATTATCCTTCAAAATAAGGTTGATCTTATTCAGGAGAATGTGGCCATCAACCAACATGAAGCAATCCGGAAGTTTATTGAGGGTACTGTAGCTGATGGTGCACCAGTTGTGCCAATTTCTGCTCAGTTGAAATATAATATTGATGTGGTGTGTGAGTACATCGTGAAGAAGATCCCAATTCCAGAAAGAAACTTTATCTCTCCTCCAAATATGATTGTTATTCGTTCTTTCGATGTTAACAAACCTGGATTTGAGGTTGATGAGATACGAGGCGGTGTAGCTGGTGGAAGTATTCTCAGGAGAGCACTGTTCTTGCTTGATATGCTTGTCTACTTTGTTGGTGGAGTTATGGGTAGTGGGAATGGTGTTTTGAAAGTGAATCAGTTTATTGAGGTTCGTCCTGGTATTGTTGTGAAAGATGAGAGTGGAAACATCAAGTGTACACCTATATATTCGAGAATAGTCTCGCTGTATGCTGAGCAGAACGAGTTGCAATTCGCAGTTCCAGGTGGTCTCATAGGGGTCGGAACAACTATGGATCCCACCTTGACACGTGCAGATAGATTAGTGGGGCAAGTTCTTGGTGAAGTAAACTTTTTCCTGTTGAGAAGGCTTCTGGGGGTCCGGACAAAGGGTTCTGAAAAGCAGGGGAAGGTCTCCAAGCTTGCCAAGGCTGAGATACTCATGTTAAATATTGGTTCTATGTCGACTGGTGCTAGGGTAATAGCCGTGAGAAATGATTTAGCGAAGCTTCAGTTGACTTCTCCTGTGTGCACAAGCAAAGGAGAGAAAATTGCGCTCAGTAGACGAGTTGAGAAGCACTGGCGTCTGATCGGTTGGGGCCAGATCCAAGCTGGAACCACACTTGAAGTCCCACCCTGCCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

388

Amino Acids

42.28

Weight (kDa)

8.72

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	35 - 151	9.4e-20	Elongation factor Tu GTP binding domain
eIF2_C	PF09173	288 - 375	1e-31	Initiation factor eIF2 gamma, C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26590 AT3G26590 AT5G38030
fragaria_vesca	FvH4_4g25500 FvH4_4g25500 FvH4_4g25510
malus_domestica	MD13G1102100.v1.1 MD16G1102700.v1.1
prunus_persica	Prupe.1G243700_v2.0.a1
pyrus_communis	pycom13g08920 pycom13g08930 pycom16g08710 pycom16g08730
rosa_chinensis	RchiOBHm_Chr4g0432851 RchiOBHm_Chr4g0432861
rosa_laevigata	RLG00000006804 RLG00000006805 RLG00000030674
rosa_multiflora	Rmu_co8449711.1_g000001 Rmu_sc0005234.1_g000013
rosa_roxburghii	Rroxscaffold_5G00374290 Rroxscaffold_5G00374300
rosa_rugosa	Rorug04G0263200 Rorug04G0263300 Rorug04G0263400 Rorug04G0263500 Rorug04G0263600
rosa_samantha	Rh4AG317500 Rh4AG317700 Rh4BG325800 Rh4CG340800 Rh4CG340900 Rh4CG341000 Rh4DG320900 Rh4DG321000
rosa_wichuraiana	Rw4G027610 Rw4G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	606, 983, 1081
AccIII	TCCGGA	2 cut(s)	342, 900
AciI	CCGC	1 cut(s)	549
AclWI	GGATC	4 cut(s)	442, 809, 822, 1117
AcoI	YGGCCR	1 cut(s)	318
AcuI	CTGAAG	2 cut(s)	251, 1013
AcvI	CACGTG	1 cut(s)	830
AcyI	GRCGYC	1 cut(s)	1102
AfaI	GTAC	3 cut(s)	361, 434, 718
AfiI	CCNNNNNNNGG	1 cut(s)	907
AflIII	ACRYGT	2 cut(s)	106, 827
AgsI	TTSAA	4 cut(s)	287, 406, 649, 1145
AjnI	CCWGG	3 cut(s)	520, 676, 781
AloI	GAACNNNNNNTCC	2 cut(s)	895, 927
AluBI	AGCT	6 cut(s)	213, 368, 557, 940, 1027, 1130
AluI	AGCT	6 cut(s)	213, 368, 557, 940, 1027, 1130
Alw21I	GWGCWC	3 cut(s)	379, 583, 1052
Alw26I	GTCTC	3 cut(s)	745, 794, 937
Alw44I	GTGCAC	2 cut(s)	375, 1048
AlwI	GGATC	4 cut(s)	442, 809, 822, 1117
Ama87I	CYCGRG	1 cut(s)	127
Aor13HI	TCCGGA	2 cut(s)	342, 900
AoxI	GGCC	3 cut(s)	130, 318, 1117
ApaLI	GTGCAC	2 cut(s)	375, 1048
ApeKI	GCWGC	3 cut(s)	167, 200, 245
AspLEI	GCGC	1 cut(s)	1075
AspS9I	GGNCC	3 cut(s)	130, 898, 1117
AsuC2I	CCSGG	2 cut(s)	128, 129
AsuHPI	GGTGA	1 cut(s)	872
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	898
BaeGI	GKGCMC	2 cut(s)	379, 1052
BaeI	ACNNNNGTAYC	2 cut(s)	947, 980
BalI	TGGCCA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	814
BbrPI	CACGTG	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	3 cut(s)	379, 583, 1052
BbvI	GCAGC	3 cut(s)	154, 187, 232
BccI	CCATC	2 cut(s)	329, 365
BceAI	ACGGC	1 cut(s)	989
BciT130I	CCWGG	3 cut(s)	522, 678, 783
BcnI	CCSGG	2 cut(s)	128, 129
BcoDI	GTCTC	3 cut(s)	745, 794, 937
BfaI	CTAG	1 cut(s)	993
BfmI	CTRYAG	1 cut(s)	363
BisI	GCNGC	3 cut(s)	168, 201, 246
BlpI	GCTNAGC	1 cut(s)	753
BlsI	GCNGC	3 cut(s)	169, 202, 247
Bme1390I	CCNGG	5 cut(s)	128, 129, 522, 678, 783
Bme18I	GGWCC	1 cut(s)	898
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	130, 898, 1117
BmiI	GGNNCC	4 cut(s)	816, 899, 1118, 1135
BmrFI	CCNGG	5 cut(s)	128, 129, 522, 678, 783
BmsI	GCATC	2 cut(s)	40, 247
BpiI	GAAGAC	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	753
BpuMI	CCSGG	2 cut(s)	128, 129
BsaAI	YACGTR	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	1102
BsaI	GGTCTC	2 cut(s)	794, 937
BsaJI	CCNNGG	2 cut(s)	127, 945
BsaWI	WCCGGW	2 cut(s)	342, 900
Bsc4I	CCNNNNNNNGG	1 cut(s)	907
Bse1I	ACTGG	3 cut(s)	380, 991, 1103
Bse3DI	GCAATG	1 cut(s)	185
BseAI	TCCGGA	2 cut(s)	342, 900
BseBI	CCWGG	3 cut(s)	522, 678, 783
BseDI	CCNNGG	2 cut(s)	127, 945
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	907
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	6 cut(s)	225, 413, 586, 744, 942, 1090
BseNI	ACTGG	3 cut(s)	380, 991, 1103
BseRI	GAGGAG	1 cut(s)	468
BseSI	GKGCMC	2 cut(s)	379, 1052
BseXI	GCAGC	3 cut(s)	154, 187, 232
BseYI	CCCAGC	2 cut(s)	71, 219
BsgI	GTGCAG	1 cut(s)	852
BshFI	GGCC	3 cut(s)	132, 320, 1119
BsiHKAI	GWGCWC	3 cut(s)	379, 583, 1052
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	3 cut(s)	128, 343, 901
BslFI	GGGAC	2 cut(s)	201, 1133
BslI	CCNNNNNNNGG	1 cut(s)	907
BsmAI	GTCTC	3 cut(s)	745, 794, 937
BsmFI	GGGAC	2 cut(s)	201, 1133
BsnI	GGCC	3 cut(s)	132, 320, 1119
Bso31I	GGTCTC	2 cut(s)	794, 937
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	3 cut(s)	379, 583, 1052
Bsp13I	TCCGGA	2 cut(s)	342, 900
Bsp1407I	TGTACA	1 cut(s)	716
Bsp143I	GATC	5 cut(s)	298, 447, 814, 1107, 1122
Bsp1720I	GCTNAGC	1 cut(s)	753
BspACI	CCGC	1 cut(s)	549
BspANI	GGCC	3 cut(s)	132, 320, 1119
BspCNI	CTCAG	6 cut(s)	226, 412, 585, 745, 943, 1089
BspEI	TCCGGA	2 cut(s)	342, 900
BspLI	GGNNCC	4 cut(s)	816, 899, 1118, 1135
BspPI	GGATC	4 cut(s)	442, 809, 822, 1117
BspTNI	GGTCTC	2 cut(s)	794, 937
BsrDI	GCAATG	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	716
BsrI	ACTGG	3 cut(s)	380, 991, 1103
BssECI	CCNNGG	2 cut(s)	127, 945
BssMI	GATC	5 cut(s)	298, 447, 814, 1107, 1122
BssNI	GRCGYC	1 cut(s)	1102
BssT1I	CCWWGG	1 cut(s)	945
Bst2UI	CCWGG	3 cut(s)	522, 678, 783
Bst4CI	ACNGT	2 cut(s)	364, 585
BstACI	GRCGYC	1 cut(s)	1102
BstAUI	TGTACA	1 cut(s)	716
BstBAI	YACGTR	1 cut(s)	830
BstC8I	GCNNGC	1 cut(s)	942
BstDEI	CTNAG	6 cut(s)	234, 399, 572, 753, 951, 1076
BstF5I	GGATG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	1075
BstKTI	GATC	5 cut(s)	301, 450, 817, 1110, 1125
BstMAI	GTCTC	3 cut(s)	745, 794, 937
BstMBI	GATC	5 cut(s)	298, 447, 814, 1107, 1122
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 374, 598
BstNI	CCWGG	3 cut(s)	522, 678, 783
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	5 cut(s)	126, 127, 520, 676, 781
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	2 cut(s)	379, 1052
BstV1I	GCAGC	3 cut(s)	154, 187, 232
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	3 cut(s)	447, 814, 1122
BstYI	RGATCY	3 cut(s)	447, 814, 1122
BsuRI	GGCC	3 cut(s)	132, 320, 1119
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	581, 1096
Cac8I	GCNNGC	1 cut(s)	942
CfoI	GCGC	1 cut(s)	1075
Cfr13I	GGNCC	3 cut(s)	130, 898, 1117
Cfr9I	CCCGGG	1 cut(s)	127
CseI	GACGC	2 cut(s)	251, 1091
Csp6I	GTAC	3 cut(s)	360, 433, 717
CviAII	CATG	4 cut(s)	107, 145, 332, 961
CviQI	GTAC	3 cut(s)	360, 433, 717
DdeI	CTNAG	6 cut(s)	234, 399, 572, 753, 951, 1076
DpnI	GATC	5 cut(s)	300, 449, 816, 1109, 1124
DpnII	GATC	5 cut(s)	298, 447, 814, 1107, 1122
EaeI	YGGCCR	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	945
Eco31I	GGTCTC	2 cut(s)	794, 937
Eco47I	GGWCC	1 cut(s)	898
Eco57I	CTGAAG	2 cut(s)	251, 1013
Eco72I	CACGTG	1 cut(s)	830
Eco88I	CYCGRG	1 cut(s)	127
EcoRII	CCWGG	3 cut(s)	520, 676, 781
EcoT14I	CCWWGG	1 cut(s)	945
ErhI	CCWWGG	1 cut(s)	945
FaeI	CATG	4 cut(s)	110, 148, 335, 964
FaqI	GGGAC	2 cut(s)	201, 1133
FatI	CATG	4 cut(s)	106, 144, 331, 960
FauNDI	CATATG	1 cut(s)	31
FblI	GTMKAC	3 cut(s)	606, 983, 1081
Fnu4HI	GCNGC	3 cut(s)	168, 201, 246
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	168, 201, 246
FspBI	CTAG	1 cut(s)	993
GlaI	GCGC	1 cut(s)	1074
GluI	GCNGC	3 cut(s)	168, 201, 246
GsaI	CCCAGC	2 cut(s)	75, 223
HaeIII	GGCC	3 cut(s)	132, 320, 1119
HapII	CCGG	3 cut(s)	128, 343, 901
HgaI	GACGC	2 cut(s)	251, 1091
HhaI	GCGC	1 cut(s)	1075
Hin1I	GRCGYC	1 cut(s)	1102
Hin1II	CATG	4 cut(s)	110, 148, 335, 964
Hin6I	GCGC	1 cut(s)	1073
HinP1I	GCGC	1 cut(s)	1073
HincII	GTYRAC	3 cut(s)	514, 984, 1035
HindII	GTYRAC	3 cut(s)	514, 984, 1035
HindIII	AAGCTT	2 cut(s)	938, 1025
HinfI	GANTC	1 cut(s)	655
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	3 cut(s)	128, 343, 901
HphI	GGTGA	1 cut(s)	872
Hpy188I	TCNGA	5 cut(s)	195, 235, 803, 916, 1107
Hpy188III	TCNNGA	7 cut(s)	308, 343, 439, 458, 574, 732, 901
HpyAV	CCTTC	3 cut(s)	293, 879, 922
HpyCH4III	ACNGT	2 cut(s)	364, 585
HpyCH4IV	ACGT	2 cut(s)	230, 829
HpyCH4V	TGCA	8 cut(s)	19, 87, 170, 203, 377, 769, 833, 1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 374, 598
HpyF3I	CTNAG	6 cut(s)	234, 399, 572, 753, 951, 1076
HpySE526I	ACGT	2 cut(s)	230, 829
Hsp92I	GRCGYC	1 cut(s)	1102
Hsp92II	CATG	4 cut(s)	110, 148, 335, 964
HspAI	GCGC	1 cut(s)	1073
Kpn2I	TCCGGA	2 cut(s)	342, 900
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	5 cut(s)	298, 447, 814, 1107, 1122
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	3 cut(s)	154, 187, 232
LweI	GCATC	2 cut(s)	40, 247
MaeI	CTAG	1 cut(s)	993
MaeII	ACGT	2 cut(s)	230, 829
MalI	GATC	5 cut(s)	300, 449, 816, 1109, 1124
MboI	GATC	5 cut(s)	298, 447, 814, 1107, 1122
MboII	GAAGA	4 cut(s)	59, 257, 454, 457
MflI	RGATCY	3 cut(s)	447, 814, 1122
MhlI	GDGCHC	3 cut(s)	379, 583, 1052
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	7 cut(s)	82, 171, 255, 390, 453, 770, 1068
MluNI	TGGCCA	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	781
MnlI	CCTC	5 cut(s)	349, 489, 523, 539, 661
Mox20I	TGGCCA	1 cut(s)	320
MroI	TCCGGA	2 cut(s)	342, 900
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	2 cut(s)	513, 965
Msp20I	TGGCCA	1 cut(s)	320
MspI	CCGG	3 cut(s)	128, 343, 901
MspR9I	CCNGG	5 cut(s)	128, 129, 522, 678, 783
MvaI	CCWGG	3 cut(s)	522, 678, 783
MwoI	GCNNNNNNNGC	3 cut(s)	268, 374, 598
NciI	CCSGG	2 cut(s)	128, 129
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	5 cut(s)	298, 447, 814, 1107, 1122
NlaIII	CATG	4 cut(s)	110, 148, 335, 964
NlaIV	GGNNCC	4 cut(s)	816, 899, 1118, 1135
NspI	RCATGY	1 cut(s)	110
PciI	ACATGT	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	655
PkrI	GCNGC	3 cut(s)	169, 202, 247
PmaCI	CACGTG	1 cut(s)	830
PmlI	CACGTG	1 cut(s)	830
Ppu21I	YACGTR	1 cut(s)	830
PscI	ACATGT	1 cut(s)	106
Psp6I	CCWGG	3 cut(s)	520, 676, 781
PspCI	CACGTG	1 cut(s)	830
PspFI	CCCAGC	2 cut(s)	71, 219
PspGI	CCWGG	3 cut(s)	520, 676, 781
PspN4I	GGNNCC	4 cut(s)	816, 899, 1118, 1135
PspPI	GGNCC	3 cut(s)	130, 898, 1117
PsuI	RGATCY	3 cut(s)	447, 814, 1122
RsaI	GTAC	3 cut(s)	361, 434, 718
RsaNI	GTAC	3 cut(s)	360, 433, 717
SalI	GTCGAC	1 cut(s)	982
SaqAI	TTAA	2 cut(s)	513, 965
SatI	GCNGC	3 cut(s)	168, 201, 246
Sau3AI	GATC	5 cut(s)	298, 447, 814, 1107, 1122
Sau96I	GGNCC	3 cut(s)	130, 898, 1117
ScrFI	CCNGG	5 cut(s)	128, 129, 522, 678, 783
SduI	GDGCHC	3 cut(s)	379, 583, 1052
SfaNI	GCATC	2 cut(s)	40, 247
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	898
SmaI	CCCGGG	1 cut(s)	129
SrfI	GCCCGGGC	1 cut(s)	129
Sse9I	AATT	7 cut(s)	82, 171, 255, 390, 453, 770, 1068
SsiI	CCGC	1 cut(s)	549
SspI	AATATT	2 cut(s)	415, 970
SspMI	CTAG	1 cut(s)	993
StyD4I	CCNGG	5 cut(s)	126, 127, 520, 676, 781
StyI	CCWWGG	1 cut(s)	945
TaaI	ACNGT	2 cut(s)	364, 585
TaiI	ACGT	2 cut(s)	233, 832
TaqI	TCGA	3 cut(s)	507, 731, 983
TasI	AATT	7 cut(s)	82, 171, 255, 390, 453, 770, 1068
TatI	WGTACW	2 cut(s)	432, 716
TfiI	GAWTC	1 cut(s)	655
Tru1I	TTAA	2 cut(s)	513, 965
Tru9I	TTAA	2 cut(s)	513, 965
TscAI	CASTG	2 cut(s)	588, 1103
TseI	GCWGC	3 cut(s)	167, 200, 245
TspDTI	ATGAA	3 cut(s)	107, 222, 348
TspMI	CCCGGG	1 cut(s)	127
TspRI	CASTG	2 cut(s)	588, 1103
VneI	GTGCAC	2 cut(s)	375, 1048
VpaK11BI	GGWCC	1 cut(s)	898
XceI	RCATGY	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1127
XmaI	CCCGGG	1 cut(s)	127
XmiI	GTMKAC	3 cut(s)	606, 983, 1081
XspI	CTAG	1 cut(s)	993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.