Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003189

Physical Location & Seq

Genomic Coordinates Forward (+)

60041039 .. 60057822

Gene Structure 16784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG340900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

ATGGAGGAGAACAAACAGCCACTGCTGTCGCCAAGAGACGAGGTGGTGGGAGTTCCACAGCATCATCAACCGATGCATGACAACCTAGATTCCTTCCCTGCACCCGCAAACCCTTCTTTCATTTCCAGCACTACCTTCAATCCCGACTCCGACGACATCCCACCCATCAATGGCGTCCGCGACTTCTTCCGAGAGTTCAACCGAGAATCGAAGAAGCTCTGGTTTCTCGCCGGCCCCGCCATCTTCACTTCACTATGCCAGTACTCTCTCGGCGCCGTCACTCAAGTCTTCGCCGGCCAGGTCAGCACCCTCGACCTCGCCGCCGTCTCCATCGAGAACTCGGTCATCGCTGGATTCTGCTTCGGCGCTTTGCTCGGCATGGGGAGTGCGCTTGAAACGCTGTGCGGCCAAGCGTTCGGAGCCGGACAGTTGGACATGTTAGGAATCTACATGCAGAGGTCGTGGCTGATCCTCAACGCCACCAGCGTAGTGTTGTGCTTTCTGTACATTTTTGCTCAGCAGATTCTGTACGGAATAGGACAGACGGCGGCGATATCCAAGGCGGCGGGGGTTTTCTCCATATACATGATACCTCAGCTGTTCGCGTACGCCATGGTTTTTCCGTTAATCAAGTTTCTGCAGTCGCAGAGCAAGATGATGGTGATGGCGGTGATCGCGGCGGTGACGCTGATATTGCACACGGTGTTCAGCTGGCTACTGATGTTGAAGCTCGGGTGGGGCCTGGTGGGCGCGGCGGTGGTGCTGAACGCGTCGTGGTGGATCATAGTGGTTTCTCAGATGGTGTACATTTTTTCCGGGGCTTGTGGTCGGGCTTGGACTGGTTTCTCATGGAAGGCCTTCCATGATCTGTGGGCGTTTGTTAAGTTGTCTCTTGCGTCGGCGGTCATGCTCTGTTTGGAAGTTTGGTATTATATGGCGTTGATTCTCTTTGCTGGATATCTAAAGAATGCAGAAGTTTCTGTGGATGGCCTATCCATATGCATGAACATATTGGGATGGACAGTCATGATGTCTTGTGGCATGAATGCAGCGATAAGTGTGAGGGTATCGAATGAACTAGGAGCAGGACATCCAAGAACAGCAAAGTTCTCGCTAGTAGTGGCTGTAATAACTTCATTTTTCGTTGGTGTTCTCCTCTCACTCGTCCTCATACTCAGCAGAAACGAATATCCAGCCTTGTTTTCAAGTGATTCAGATGTTCAAGCGCTCGTGGTGCAGCTCACTCCCTTGCTGGCAACCTGCATTGTCATCAATAACATTCAACCTGTACTCTCTGGTGTTGCAATTGGAGCAGGATGGCAAGCTTTTGTGGCTTATGTCAACATAGGCTGTTACTATATAGTTGGGGTACCATTGGGTTTACTCTTTGGGTACAAATTTGACTGGGGTGTTACGGGGATTTGGACTGGAATGCTGTTAGGGACGGTTCTTCAGACTTGTGTCCTTTTCTATTTGGTTTATAAGACCAACTGGAACAAAGAGGCTTCTATAGCTGAAGACAGGATACGGAAATGGAGAGGCCAATCAAACAATCCCAAAGACTCGGAGAATAATGGCGCAACGATATTGAAAGTTTCAAGTAAAAAGATTGAACAACGCAATGCAACTACGGCAGCACAAATGCAATTTTTATTTTTCAATTATAGGGCCATCTTCTGCAATGATTGGAATGCAAAGAGCTGGAGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

570

Amino Acids

62.72

Weight (kDa)

8.17

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	79 - 239	2.8e-31	MatE
MatE	PF01554	300 - 461	8.5e-31	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26590 AT3G26590 AT5G38030
fragaria_vesca	FvH4_4g25500 FvH4_4g25500 FvH4_4g25510
malus_domestica	MD13G1102100.v1.1 MD16G1102700.v1.1
prunus_persica	Prupe.1G243700_v2.0.a1
pyrus_communis	pycom13g08920 pycom13g08930 pycom16g08710 pycom16g08730
rosa_chinensis	RchiOBHm_Chr4g0432851 RchiOBHm_Chr4g0432861
rosa_laevigata	RLG00000006804 RLG00000006805 RLG00000030674
rosa_multiflora	Rmu_co8449711.1_g000001 Rmu_sc0005234.1_g000013
rosa_roxburghii	Rroxscaffold_5G00374290 Rroxscaffold_5G00374300
rosa_rugosa	Rorug04G0263200 Rorug04G0263300 Rorug04G0263400 Rorug04G0263500 Rorug04G0263600
rosa_samantha	Rh4AG317500 Rh4AG317700 Rh4BG325800 Rh4CG340800 Rh4CG340900 Rh4CG341000 Rh4DG320900 Rh4DG321000
rosa_wichuraiana	Rw4G027610 Rw4G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1482
Acc36I	ACCTGC	1 cut(s)	1268
Acc65I	GGTACC	1 cut(s)	1369
AccB1I	GGYRCC	2 cut(s)	272, 1369
AccII	CGCG	5 cut(s)	180, 605, 677, 752, 770
AclWI	GGATC	2 cut(s)	463, 788
AcoI	YGGCCR	2 cut(s)	295, 406
AcsI	RAATTY	1 cut(s)	1397
AcuI	CTGAAG	2 cut(s)	1436, 1536
AcyI	GRCGYC	2 cut(s)	174, 273
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	8 cut(s)	263, 506, 530, 608, 806, 1290, 1371, 1394
AfeI	AGCGCT	1 cut(s)	1227
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflIII	ACRYGT	2 cut(s)	435, 768
AjnI	CCWGG	2 cut(s)	297, 741
AluBI	AGCT	8 cut(s)	217, 598, 711, 730, 1240, 1325, 1514, 1701
AluI	AGCT	8 cut(s)	217, 598, 711, 730, 1240, 1325, 1514, 1701
Alw26I	GTCTC	3 cut(s)	30, 331, 894
AlwI	GGATC	2 cut(s)	463, 788
AlwNI	CAGNNNCTG	2 cut(s)	22, 526
Ama87I	CYCGRG	1 cut(s)	731
Aor51HI	AGCGCT	1 cut(s)	1227
AoxI	GGCC	8 cut(s)	232, 295, 406, 739, 855, 988, 1540, 1668
ApeKI	GCWGC	3 cut(s)	1049, 1237, 1634
ApoI	RAATTY	1 cut(s)	1397
Asp700I	GAANNNNTTC	1 cut(s)	857
Asp718I	GGTACC	1 cut(s)	1369
AspLEI	GCGC	6 cut(s)	275, 368, 391, 752, 1228, 1580
AspS9I	GGNCC	4 cut(s)	233, 739, 1668, 1707
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	3 cut(s)	673, 682, 694
AvaI	CYCGRG	1 cut(s)	731
AvaII	GGWCC	1 cut(s)	1707
BanI	GGYRCC	2 cut(s)	272, 1369
BarI	GAAGNNNNNNTAC	2 cut(s)	1509, 1541
BauI	CACGAG	1 cut(s)	1229
BbsI	GAAGAC	2 cut(s)	280, 1524
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	3 cut(s)	1061, 1249, 1646
BceAI	ACGGC	4 cut(s)	260, 308, 561, 1647
BcgI	CGANNNNNNTGC	2 cut(s)	1092, 1126
BciT130I	CCWGG	2 cut(s)	299, 743
BciVI	GTATCC	1 cut(s)	1518
BcnI	CCSGG	1 cut(s)	817
BcoDI	GTCTC	3 cut(s)	30, 331, 894
BfaI	CTAG	3 cut(s)	86, 1079, 1115
BfmI	CTRYAG	2 cut(s)	638, 1509
BfoI	RGCGCY	3 cut(s)	276, 369, 1229
BfuAI	ACCTGC	1 cut(s)	1268
BfuI	GTATCC	1 cut(s)	1518
BglI	GCCNNNNNGGC	1 cut(s)	747
BisI	GCNGC	9 cut(s)	321, 406, 549, 564, 678, 753, 1050, 1238, 1635
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	9 cut(s)	322, 407, 550, 565, 679, 754, 1051, 1239, 1636
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	3 cut(s)	299, 743, 817
Bme18I	GGWCC	1 cut(s)	1707
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	4 cut(s)	233, 739, 1668, 1707
BmiI	GGNNCC	5 cut(s)	235, 274, 421, 740, 1371
BmrFI	CCNGG	3 cut(s)	299, 743, 817
BmrI	ACTGGG	1 cut(s)	1414
BmsI	GCATC	2 cut(s)	63, 70
BmuI	ACTGGG	1 cut(s)	1414
BoxI	GACNNNNGTC	1 cut(s)	1460
BpiI	GAAGAC	2 cut(s)	280, 1524
Bpu10I	CCTNAGC	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	817
BsaHI	GRCGYC	2 cut(s)	174, 273
BsaJI	CCNNGG	3 cut(s)	558, 612, 816
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	2 cut(s)	230, 293
Bse1I	ACTGG	5 cut(s)	259, 844, 1409, 1432, 1496
Bse3DI	GCAATG	2 cut(s)	1627, 1687
BseBI	CCWGG	2 cut(s)	299, 743
BseDI	CCNNGG	3 cut(s)	558, 612, 816
BseGI	GGATG	5 cut(s)	156, 991, 1022, 1090, 1322
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	2 cut(s)	1627, 1687
BseMII	CTCAG	4 cut(s)	530, 608, 809, 1189
BseNI	ACTGG	5 cut(s)	259, 844, 1409, 1432, 1496
BseRI	GAGGAG	2 cut(s)	20, 1145
BseXI	GCAGC	3 cut(s)	1061, 1249, 1646
BsgI	GTGCAG	2 cut(s)	84, 1256
Bsh1236I	CGCG	5 cut(s)	180, 605, 677, 752, 770
BshFI	GGCC	8 cut(s)	234, 297, 408, 741, 857, 990, 1542, 1670
BshNI	GGYRCC	2 cut(s)	272, 1369
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	4 cut(s)	231, 294, 423, 816
BsiWI	CGTACG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	1456
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	3 cut(s)	30, 331, 894
BsmBI	CGTCTC	2 cut(s)	30, 331
BsmFI	GGGAC	1 cut(s)	1456
BsmI	GAATGC	4 cut(s)	973, 1051, 1437, 1696
BsnI	GGCC	8 cut(s)	234, 297, 408, 741, 857, 990, 1542, 1670
BsoBI	CYCGRG	1 cut(s)	731
Bsp1407I	TGTACA	2 cut(s)	504, 804
Bsp143I	GATC	4 cut(s)	468, 672, 780, 865
Bsp1720I	GCTNAGC	1 cut(s)	516
Bsp19I	CCATGG	1 cut(s)	612
BspANI	GGCC	8 cut(s)	234, 297, 408, 741, 857, 990, 1542, 1670
BspCNI	CTCAG	4 cut(s)	529, 607, 808, 1188
BspFNI	CGCG	5 cut(s)	180, 605, 677, 752, 770
BspHI	TCATGA	1 cut(s)	1026
BspLI	GGNNCC	5 cut(s)	235, 274, 421, 740, 1371
BspMAI	CTGCAG	1 cut(s)	642
BspMI	ACCTGC	1 cut(s)	1268
BspPI	GGATC	2 cut(s)	463, 788
BspT107I	GGYRCC	2 cut(s)	272, 1369
BsrDI	GCAATG	2 cut(s)	1627, 1687
BsrFI	RCCGGY	2 cut(s)	230, 293
BsrGI	TGTACA	2 cut(s)	504, 804
BsrI	ACTGG	5 cut(s)	259, 844, 1409, 1432, 1496
BssAI	RCCGGY	2 cut(s)	230, 293
BssECI	CCNNGG	3 cut(s)	558, 612, 816
BssMI	GATC	4 cut(s)	468, 672, 780, 865
BssNI	GRCGYC	2 cut(s)	174, 273
BssSI	CACGAG	1 cut(s)	1229
BssT1I	CCWWGG	2 cut(s)	558, 612
Bst2BI	CACGAG	1 cut(s)	1229
Bst2UI	CCWGG	2 cut(s)	299, 743
Bst4CI	ACNGT	4 cut(s)	429, 703, 1024, 1447
BstACI	GRCGYC	2 cut(s)	174, 273
BstAUI	TGTACA	2 cut(s)	504, 804
BstC8I	GCNNGC	5 cut(s)	232, 295, 713, 1254, 1323
BstDEI	CTNAG	4 cut(s)	516, 594, 795, 1175
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	5 cut(s)	156, 991, 1022, 1090, 1322
BstFNI	CGCG	5 cut(s)	180, 605, 677, 752, 770
BstH2I	RGCGCY	3 cut(s)	276, 369, 1229
BstHHI	GCGC	6 cut(s)	275, 368, 391, 752, 1228, 1580
BstKTI	GATC	4 cut(s)	471, 675, 783, 868
BstMAI	GTCTC	3 cut(s)	30, 331, 894
BstMBI	GATC	4 cut(s)	468, 672, 780, 865
BstNI	CCWGG	2 cut(s)	299, 743
BstNSI	RCATGY	2 cut(s)	439, 454
BstPAI	GACNNNNGTC	1 cut(s)	1460
BstSCI	CCNGG	3 cut(s)	297, 741, 815
BstSFI	CTRYAG	2 cut(s)	638, 1509
BstUI	CGCG	5 cut(s)	180, 605, 677, 752, 770
BstV1I	GCAGC	3 cut(s)	1061, 1249, 1646
BstV2I	GAAGAC	2 cut(s)	280, 1524
BsuI	GTATCC	1 cut(s)	1518
BsuRI	GGCC	8 cut(s)	234, 297, 408, 741, 857, 990, 1542, 1670
BtgI	CCRYGG	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	331
BtsCI	GGATG	5 cut(s)	156, 991, 1022, 1090, 1322
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	1268
Cac8I	GCNNGC	5 cut(s)	232, 295, 713, 1254, 1323
CaiI	CAGNNNCTG	2 cut(s)	22, 526
CciI	TCATGA	1 cut(s)	1026
CfoI	GCGC	6 cut(s)	275, 368, 391, 752, 1228, 1580
Cfr10I	RCCGGY	2 cut(s)	230, 293
Cfr13I	GGNCC	4 cut(s)	233, 739, 1668, 1707
CseI	GACGC	4 cut(s)	163, 694, 759, 885
Csp6I	GTAC	8 cut(s)	262, 505, 529, 607, 805, 1289, 1370, 1393
CviQI	GTAC	8 cut(s)	262, 505, 529, 607, 805, 1289, 1370, 1393
DdeI	CTNAG	4 cut(s)	516, 594, 795, 1175
DinI	GGCGCC	1 cut(s)	274
DpnI	GATC	4 cut(s)	470, 674, 782, 867
DpnII	GATC	4 cut(s)	468, 672, 780, 865
DraIII	CACNNNGTG	1 cut(s)	703
EaeI	YGGCCR	2 cut(s)	295, 406
Eco130I	CCWWGG	2 cut(s)	558, 612
Eco147I	AGGCCT	1 cut(s)	857
Eco32I	GATATC	2 cut(s)	555, 959
Eco47I	GGWCC	1 cut(s)	1707
Eco47III	AGCGCT	1 cut(s)	1227
Eco57I	CTGAAG	2 cut(s)	1436, 1536
Eco88I	CYCGRG	1 cut(s)	731
EcoO109I	RGGNCCY	2 cut(s)	739, 1707
EcoRII	CCWGG	2 cut(s)	297, 741
EcoRV	GATATC	2 cut(s)	555, 959
EcoT14I	CCWWGG	2 cut(s)	558, 612
EcoT22I	ATGCAT	2 cut(s)	78, 1004
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
ErhI	CCWWGG	2 cut(s)	558, 612
Esp3I	CGTCTC	2 cut(s)	30, 331
FaqI	GGGAC	1 cut(s)	1456
FauI	CCCGC	3 cut(s)	112, 244, 559
FauNDI	CATATG	1 cut(s)	998
Fnu4HI	GCNGC	9 cut(s)	321, 406, 549, 564, 678, 753, 1050, 1238, 1635
FokI	GGATG	5 cut(s)	143, 998, 1029, 1077, 1329
Fsp4HI	GCNGC	9 cut(s)	321, 406, 549, 564, 678, 753, 1050, 1238, 1635
FspBI	CTAG	3 cut(s)	86, 1079, 1115
GlaI	GCGC	6 cut(s)	274, 367, 390, 751, 1227, 1579
GluI	GCNGC	9 cut(s)	321, 406, 549, 564, 678, 753, 1050, 1238, 1635
HaeII	RGCGCY	3 cut(s)	276, 369, 1229
HaeIII	GGCC	8 cut(s)	234, 297, 408, 741, 857, 990, 1542, 1670
HapII	CCGG	4 cut(s)	231, 294, 423, 816
HgaI	GACGC	4 cut(s)	163, 694, 759, 885
HhaI	GCGC	6 cut(s)	275, 368, 391, 752, 1228, 1580
Hin1I	GRCGYC	2 cut(s)	174, 273
Hin6I	GCGC	6 cut(s)	273, 366, 389, 750, 1226, 1578
HinP1I	GCGC	6 cut(s)	273, 366, 389, 750, 1226, 1578
HincII	GTYRAC	1 cut(s)	1342
HindII	GTYRAC	1 cut(s)	1342
HindIII	AAGCTT	1 cut(s)	1323
HinfI	GANTC	9 cut(s)	89, 146, 206, 354, 444, 523, 943, 1211, 1562
HpaII	CCGG	4 cut(s)	231, 294, 423, 816
HphI	GGTGA	3 cut(s)	673, 682, 694
Hpy166II	GTNNAC	3 cut(s)	805, 1342, 1382
Hpy188I	TCNGA	7 cut(s)	151, 191, 419, 798, 1216, 1455, 1567
Hpy188III	TCNNGA	3 cut(s)	143, 334, 1027
Hpy8I	GTNNAC	3 cut(s)	805, 1342, 1382
Hpy99I	CGWCG	3 cut(s)	155, 775, 901
HpyAV	CCTTC	5 cut(s)	103, 123, 145, 847, 868
HpyCH4III	ACNGT	4 cut(s)	429, 703, 1024, 1447
HpyF3I	CTNAG	4 cut(s)	516, 594, 795, 1175
Hsp92I	GRCGYC	2 cut(s)	174, 273
HspAI	GCGC	6 cut(s)	273, 366, 389, 750, 1226, 1578
KasI	GGCGCC	1 cut(s)	272
KpnI	GGTACC	1 cut(s)	1373
KroI	GCCGGC	2 cut(s)	230, 293
KroNI	GCCGGC	2 cut(s)	232, 295
Kzo9I	GATC	4 cut(s)	468, 672, 780, 865
LmnI	GCTCC	3 cut(s)	419, 1082, 1310
Lsp1109I	GCAGC	3 cut(s)	1061, 1249, 1646
LweI	GCATC	2 cut(s)	63, 70
MaeI	CTAG	3 cut(s)	86, 1079, 1115
MaeIII	GTNAC	4 cut(s)	277, 682, 1352, 1411
MalI	GATC	4 cut(s)	470, 674, 782, 867
MboI	GATC	4 cut(s)	468, 672, 780, 865
MboII	GAAGA	7 cut(s)	178, 223, 235, 280, 1442, 1529, 1666
MfeI	CAATTG	1 cut(s)	1305
MluCI	AATT	4 cut(s)	1305, 1397, 1646, 1660
MluI	ACGCGT	1 cut(s)	768
Mly113I	GGCGCC	1 cut(s)	273
MlyI	GAGTC	2 cut(s)	140, 1556
MmeI	TCCRAC	2 cut(s)	174, 411
Mph1103I	ATGCAT	2 cut(s)	78, 1004
MroNI	GCCGGC	2 cut(s)	230, 293
MroXI	GAANNNNTTC	1 cut(s)	857
MseI	TTAA	2 cut(s)	626, 882
MslI	CAYNNNNRTG	2 cut(s)	584, 1001
MspA1I	CMGCKG	2 cut(s)	598, 711
MspI	CCGG	4 cut(s)	231, 294, 423, 816
MspR9I	CCNGG	3 cut(s)	299, 743, 817
MunI	CAATTG	1 cut(s)	1305
Mva1269I	GAATGC	4 cut(s)	973, 1051, 1437, 1696
MvaI	CCWGG	2 cut(s)	299, 743
MvnI	CGCG	5 cut(s)	180, 605, 677, 752, 770
NaeI	GCCGGC	2 cut(s)	232, 295
NarI	GGCGCC	1 cut(s)	273
NciI	CCSGG	1 cut(s)	817
NcoI	CCATGG	1 cut(s)	612
NdeI	CATATG	1 cut(s)	998
NdeII	GATC	4 cut(s)	468, 672, 780, 865
NgoMIV	GCCGGC	2 cut(s)	230, 293
NlaIV	GGNNCC	5 cut(s)	235, 274, 421, 740, 1371
NmeAIII	GCCGAG	2 cut(s)	249, 354
NmuCI	GTSAC	2 cut(s)	277, 682
NsiI	ATGCAT	2 cut(s)	78, 1004
NspI	RCATGY	2 cut(s)	439, 454
PagI	TCATGA	1 cut(s)	1026
PceI	AGGCCT	1 cut(s)	857
PciI	ACATGT	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PctI	GAATGC	4 cut(s)	973, 1051, 1437, 1696
PdiI	GCCGGC	2 cut(s)	232, 295
PdmI	GAANNNNTTC	1 cut(s)	857
PfeI	GAWTC	7 cut(s)	89, 206, 354, 444, 523, 943, 1211
Pfl23II	CGTACG	1 cut(s)	606
PkrI	GCNGC	9 cut(s)	322, 407, 550, 565, 679, 754, 1051, 1239, 1636
PleI	GAGTC	2 cut(s)	140, 1556
PluTI	GGCGCC	1 cut(s)	276
PpsI	GAGTC	2 cut(s)	140, 1556
PpuMI	RGGWCCY	1 cut(s)	1707
PscI	ACATGT	1 cut(s)	435
PshAI	GACNNNNGTC	1 cut(s)	1460
PsiI	TTATAA	1 cut(s)	1482
Psp5II	RGGWCCY	1 cut(s)	1707
Psp6I	CCWGG	2 cut(s)	297, 741
PspGI	CCWGG	2 cut(s)	297, 741
PspLI	CGTACG	1 cut(s)	606
PspN4I	GGNNCC	5 cut(s)	235, 274, 421, 740, 1371
PspPI	GGNCC	4 cut(s)	233, 739, 1668, 1707
PspPPI	RGGWCCY	1 cut(s)	1707
PstI	CTGCAG	1 cut(s)	642
PstNI	CAGNNNCTG	2 cut(s)	22, 526
PvuII	CAGCTG	2 cut(s)	598, 711
RsaI	GTAC	8 cut(s)	263, 506, 530, 608, 806, 1290, 1371, 1394
RsaNI	GTAC	8 cut(s)	262, 505, 529, 607, 805, 1289, 1370, 1393
RseI	CAYNNNNRTG	2 cut(s)	584, 1001
SaqAI	TTAA	2 cut(s)	626, 882
SatI	GCNGC	9 cut(s)	321, 406, 549, 564, 678, 753, 1050, 1238, 1635
Sau3AI	GATC	4 cut(s)	468, 672, 780, 865
Sau96I	GGNCC	4 cut(s)	233, 739, 1668, 1707
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	2 cut(s)	140, 1556
ScrFI	CCNGG	3 cut(s)	299, 743, 817
SfaNI	GCATC	2 cut(s)	63, 70
SfcI	CTRYAG	2 cut(s)	638, 1509
SfoI	GGCGCC	1 cut(s)	274
SinI	GGWCC	1 cut(s)	1707
SmiMI	CAYNNNNRTG	2 cut(s)	584, 1001
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	4 cut(s)	1305, 1397, 1646, 1660
SseBI	AGGCCT	1 cut(s)	857
SspDI	GGCGCC	1 cut(s)	272
SspMI	CTAG	3 cut(s)	86, 1079, 1115
StuI	AGGCCT	1 cut(s)	857
StyD4I	CCNGG	3 cut(s)	297, 741, 815
StyI	CCWWGG	2 cut(s)	558, 612
TaaI	ACNGT	4 cut(s)	429, 703, 1024, 1447
TaqI	TCGA	4 cut(s)	209, 312, 333, 1070
TaqII	GACCGA	1 cut(s)	331
TasI	AATT	4 cut(s)	1305, 1397, 1646, 1660
TatI	WGTACW	4 cut(s)	261, 504, 804, 1288
TauI	GCSGC	6 cut(s)	323, 408, 551, 566, 680, 755
TfiI	GAWTC	7 cut(s)	89, 206, 354, 444, 523, 943, 1211
Tru1I	TTAA	2 cut(s)	626, 882
Tru9I	TTAA	2 cut(s)	626, 882
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	277, 682
TseI	GCWGC	3 cut(s)	1049, 1237, 1634
Tsp45I	GTSAC	2 cut(s)	277, 682
TspDTI	ATGAA	5 cut(s)	109, 1019, 1058, 1089, 1125
TspGWI	ACGGA	3 cut(s)	546, 612, 1543
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	1707
XapI	RAATTY	1 cut(s)	1397
XceI	RCATGY	2 cut(s)	439, 454
XmnI	GAANNNNTTC	1 cut(s)	857
XspI	CTAG	3 cut(s)	86, 1079, 1115
ZrmI	AGTACT	1 cut(s)	263
Zsp2I	ATGCAT	2 cut(s)	78, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.