RchiOBHm_Chr4g0432851

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
56890214 .. 56894169
3956 bp
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UTR
Exon/CDS
Intron
PRQ40142

Sequence Viewer

Length: 1581 bp
ATGGCGGACAATAGGCAGCCACTTCTGTCCTCGAGAGACGAGGTGGTGCCACCTCCTCAACATCAGGTGCATGACCACCTAGAGTCCCTCCCACCCGCAAACCCTTCTTTCATTTCTAGCAGCACCTTCAATCCCGACTCCGATGACATCCCTCCCATCAATGGCGTCCGCGACTTCTTCCGAGAGTTCAAGCGGGAATCCAAGAAGCTCTGGTTTCTTGCCGGCCCCGCCATCTTCACTTCCCTATGCCAGTACTCTCTCGGCGCAGTCACCCAAATCTTCGCCGGCCACGTCGGCACTCTAGACCTGGCCGCCGTCTCCATCGAAAACTCCGTCATCGCTGGATTCTCCTTCGGCCTTTTGCTTGGAATGGGGAGTGCGCTCGAGACGCTATGCGGGCAAGCGTTCGGGGCCGGACAGTTGGACATGTTAGGAATCTACATGCAGCGTTCGTGGGTGATCCTCAACATAACCGGCGTAGCGTTGTGCTTTCTCTACATATTTGCTCAGCAGATTCTGTACGGAATAGGGCAGACGGCGGAGATATCAAAGGCGGCGGGGGTGTTCGCTCTCTATATGATTCCACAGCTGTTCGCGTACGCGTTTAACTTTCCGATAACCAAGTTTCTGCAGTCACAGAGCAAGATCATGGTGATGGCGGTGATCGCGGCGGTGGTGCTGATCATACACACAGTGTTCAGCTGGCTGCTGATGTTGAAGCTCGGGTGGGGGCTGGTTGGCGCGGCGGTGGTGCTCAACGTGTCCTGGTGGCTCGTAGTGCTGTCGCAGCTGGGTTATATTGTGGCCGGGACTTGTGGTCGGGCGTGGACGGGCTTCTCTTTGAAGGCCTTCCATAATCTTTGGGAGTTTGTTAAGTTGTCTCTTGCTTCAGCACTCATGCTCTGTTTGGAAGTGTGGTATTTTATGGCCTTGATTCTCTTTGCTGGGTACCTACCCGATGCAGAAGTTTCTGTGGATGGCCTATCCATATGCATGAACATCTTGGGATGGACAGTCATGGTGTCTCTAGGCATGAATGCTGCAATAAGTGTAAGAGTGTCGAATGAACTAGGAGGAGGACACCCAAGAACAGCAAAGTTCTCACTAGTAGTGGCTGTGATATCATCCTTTTTCGTCGGTGTTTTCATTTCCCTCATCCTCATCATCTTCAGAAACCAATATCCCGCCTTGTTTTCAAGCGATTCGGAAGTGCAGGCTCTCGTGAAGCAGCTTACGCCTTTGCTGGCAACCTGCATTGTCATCAACAACATTCAGCCTGTATTATCTGGTGTTGCAATTGGAGCAGGATGGCAAGCTATTGTGGCCTATGTGAACATAGCATGTTACTATGTAGTTGGGGTACCTTTGGGTTTACTCTTTGGTTACTACTTTGACTGGGGTGTTGAGGGTATCTGGAGTGGAATGCTGATAGGGACATGCATCCAAACTATTGTCCTTTTCATCATGGTTTATAGGACCAACTGGAACAAAGAGGCTTCTATAGCAGAAGACAGGATAAAGAAATGGGGAGGCCAATCAGACAATGCCATTGACAAGGAGAGCAACATTGCAACAACATAG

Protein Analysis

526

Amino Acids

57.42

Weight (kDa)

5.82

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 76 - 236 1.4e-34 MatE
MatE PF01554 297 - 458 8.8e-34 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1259
Acc65I GGTACC 2 cut(s) 948, 1360
AccB1I GGYRCC 3 cut(s) 46, 948, 1360
AccII CGCG 5 cut(s) 171, 596, 602, 668, 743
AclWI GGATC 1 cut(s) 454
AcoI YGGCCR 3 cut(s) 286, 309, 804
AcuI CTGAAG 2 cut(s) 873, 1153
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 694
AfaI GTAC 5 cut(s) 254, 521, 599, 950, 1362
AfiI CCNNNNNNNGG 1 cut(s) 161
AflIII ACRYGT 3 cut(s) 426, 600, 759
AgsI TTSAA 5 cut(s) 130, 190, 718, 844, 1197
AhdI GACNNNNNGTC 1 cut(s) 816
AhlI ACTAGT 1 cut(s) 1105
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 2 cut(s) 306, 764
AluBI AGCT 7 cut(s) 208, 589, 702, 721, 790, 1231, 1316
AluI AGCT 7 cut(s) 208, 589, 702, 721, 790, 1231, 1316
Alw21I GWGCWC 1 cut(s) 756
Alw26I GTCTC 5 cut(s) 30, 322, 380, 885, 1029
AlwI GGATC 1 cut(s) 454
AlwNI CAGNNNCTG 1 cut(s) 517
Ama87I CYCGRG 3 cut(s) 31, 383, 722
ApeKI GCWGC 7 cut(s) 16, 120, 445, 706, 787, 1040, 1228
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
Asp700I GAANNNNTTC 1 cut(s) 848
Asp718I GGTACC 2 cut(s) 948, 1360
AspLEI GCGC 3 cut(s) 266, 382, 743
AspS9I GGNCC 3 cut(s) 224, 411, 1476
AsuC2I CCSGG 1 cut(s) 808
AsuHPI GGTGA 4 cut(s) 262, 469, 664, 673
AvaI CYCGRG 3 cut(s) 31, 383, 722
AvaII GGWCC 1 cut(s) 1476
BanI GGYRCC 3 cut(s) 46, 948, 1360
BauI CACGAG 1 cut(s) 1220
BbsI GAAGAC 1 cut(s) 1515
Bbv12I GWGCWC 1 cut(s) 756
BbvI GCAGC 7 cut(s) 28, 132, 457, 693, 799, 1027, 1240
BccI CCATC 7 cut(s) 164, 239, 329, 649, 971, 1002, 1302
BceAI ACGGC 2 cut(s) 299, 552
BciT130I CCWGG 2 cut(s) 308, 766
BclI TGATCA 1 cut(s) 681
BcnI CCSGG 1 cut(s) 808
BcoDI GTCTC 5 cut(s) 30, 322, 380, 885, 1029
BcuI ACTAGT 1 cut(s) 1105
BfaI CTAG 6 cut(s) 80, 117, 302, 1028, 1070, 1106
BfmI CTRYAG 2 cut(s) 629, 1500
BfuAI ACCTGC 1 cut(s) 1259
BglI GCCNNNNNGGC 1 cut(s) 294
BlpI GCTNAGC 1 cut(s) 507
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 3 cut(s) 308, 766, 808
Bme18I GGWCC 1 cut(s) 1476
BmeRI GACNNNNNGTC 1 cut(s) 816
BmeT110I CYCGRG 3 cut(s) 31, 383, 722
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 3 cut(s) 224, 411, 1476
BmiI GGNNCC 5 cut(s) 48, 226, 412, 950, 1362
BmrFI CCNGG 3 cut(s) 308, 766, 808
BmrI ACTGGG 1 cut(s) 1405
BmsI GCATC 2 cut(s) 949, 1449
BmuI ACTGGG 1 cut(s) 1405
BpiI GAAGAC 1 cut(s) 1515
BpmI CTGGAG 1 cut(s) 1435
Bpu1102I GCTNAGC 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 808
BsaHI GRCGYC 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 3 cut(s) 221, 284, 473
Bse1I ACTGG 3 cut(s) 250, 1400, 1487
Bse3DI GCAATG 1 cut(s) 1566
BseBI CCWGG 2 cut(s) 308, 766
BseGI GGATG 7 cut(s) 147, 982, 1013, 1124, 1155, 1313, 1440
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 1566
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 3 cut(s) 250, 1400, 1487
BseRI GAGGAG 2 cut(s) 45, 1089
BseXI GCAGC 7 cut(s) 28, 132, 457, 693, 799, 1027, 1240
BseYI CCCAGC 2 cut(s) 790, 944
BsgI GTGCAG 1 cut(s) 1232
Bsh1236I CGCG 5 cut(s) 171, 596, 602, 668, 743
BshNI GGYRCC 3 cut(s) 46, 948, 1360
BsiHKAI GWGCWC 1 cut(s) 756
BsiHKCI CYCGRG 3 cut(s) 31, 383, 722
BsiSI CCGG 5 cut(s) 222, 285, 414, 474, 807
BsiWI CGTACG 1 cut(s) 597
BslFI GGGAC 3 cut(s) 70, 823, 1447
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 5 cut(s) 30, 322, 380, 885, 1029
BsmBI CGTCTC 3 cut(s) 30, 322, 380
BsmFI GGGAC 3 cut(s) 70, 823, 1447
BsmI GAATGC 2 cut(s) 1042, 1428
BsoBI CYCGRG 3 cut(s) 31, 383, 722
Bsp1286I GDGCHC 1 cut(s) 756
Bsp143I GATC 4 cut(s) 459, 645, 663, 681
Bsp1720I GCTNAGC 1 cut(s) 507
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 5 cut(s) 171, 596, 602, 668, 743
BspLI GGNNCC 5 cut(s) 48, 226, 412, 950, 1362
BspMAI CTGCAG 1 cut(s) 633
BspMI ACCTGC 1 cut(s) 1259
BspPI GGATC 1 cut(s) 454
BspT107I GGYRCC 3 cut(s) 46, 948, 1360
BsrDI GCAATG 1 cut(s) 1566
BsrFI RCCGGY 3 cut(s) 221, 284, 473
BsrI ACTGG 3 cut(s) 250, 1400, 1487
BssAI RCCGGY 3 cut(s) 221, 284, 473
BssMI GATC 4 cut(s) 459, 645, 663, 681
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 1220
Bst2BI CACGAG 1 cut(s) 1220
Bst2UI CCWGG 2 cut(s) 308, 766
Bst4CI ACNGT 3 cut(s) 420, 694, 1015
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 8 cut(s) 223, 286, 398, 402, 704, 1215, 1245, 1314
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 7 cut(s) 147, 982, 1013, 1124, 1155, 1313, 1440
BstFNI CGCG 5 cut(s) 171, 596, 602, 668, 743
BstHHI GCGC 3 cut(s) 266, 382, 743
BstKTI GATC 4 cut(s) 462, 648, 666, 684
BstMAI GTCTC 5 cut(s) 30, 322, 380, 885, 1029
BstMBI GATC 4 cut(s) 459, 645, 663, 681
BstNI CCWGG 2 cut(s) 308, 766
BstNSI RCATGY 4 cut(s) 430, 445, 1344, 1440
BstSCI CCNGG 3 cut(s) 306, 764, 806
BstSFI CTRYAG 2 cut(s) 629, 1500
BstUI CGCG 5 cut(s) 171, 596, 602, 668, 743
BstV1I GCAGC 7 cut(s) 28, 132, 457, 693, 799, 1027, 1240
BstV2I GAAGAC 1 cut(s) 1515
BtgZI GCGATG 1 cut(s) 322
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 7 cut(s) 147, 982, 1013, 1124, 1155, 1313, 1440
BtsIMutI CAGTG 1 cut(s) 699
BveI ACCTGC 1 cut(s) 1259
Cac8I GCNNGC 8 cut(s) 223, 286, 398, 402, 704, 1215, 1245, 1314
CaiI CAGNNNCTG 1 cut(s) 517
CfoI GCGC 3 cut(s) 266, 382, 743
Cfr10I RCCGGY 3 cut(s) 221, 284, 473
Cfr13I GGNCC 3 cut(s) 224, 411, 1476
CseI GACGC 2 cut(s) 154, 397
Csp6I GTAC 5 cut(s) 253, 520, 598, 949, 1361
CviQI GTAC 5 cut(s) 253, 520, 598, 949, 1361
DdeI CTNAG 1 cut(s) 507
DpnI GATC 4 cut(s) 461, 647, 665, 683
DpnII GATC 4 cut(s) 459, 645, 663, 681
DraIII CACNNNGTG 1 cut(s) 694
DriI GACNNNNNGTC 1 cut(s) 816
EaeI YGGCCR 3 cut(s) 286, 309, 804
Eam1105I GACNNNNNGTC 1 cut(s) 816
EciI GGCGGA 2 cut(s) 20, 554
Eco147I AGGCCT 1 cut(s) 848
Eco32I GATATC 2 cut(s) 546, 1122
Eco47I GGWCC 1 cut(s) 1476
Eco57I CTGAAG 2 cut(s) 873, 1153
Eco88I CYCGRG 3 cut(s) 31, 383, 722
EcoRII CCWGG 2 cut(s) 306, 764
EcoRV GATATC 2 cut(s) 546, 1122
EcoT22I ATGCAT 2 cut(s) 995, 1442
Esp3I CGTCTC 3 cut(s) 30, 322, 380
FaqI GGGAC 3 cut(s) 70, 823, 1447
FauI CCCGC 6 cut(s) 103, 186, 235, 389, 550, 1192
FauNDI CATATG 1 cut(s) 989
FbaI TGATCA 1 cut(s) 681
FokI GGATG 7 cut(s) 134, 989, 1020, 1111, 1142, 1320, 1427
FspBI CTAG 6 cut(s) 80, 117, 302, 1028, 1070, 1106
GlaI GCGC 3 cut(s) 265, 381, 742
GsaI CCCAGC 2 cut(s) 794, 948
GsuI CTGGAG 1 cut(s) 1435
HapII CCGG 5 cut(s) 222, 285, 414, 474, 807
HgaI GACGC 2 cut(s) 154, 397
HhaI GCGC 3 cut(s) 266, 382, 743
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 3 cut(s) 264, 380, 741
HinP1I GCGC 3 cut(s) 264, 380, 741
HinfI GANTC 9 cut(s) 83, 137, 197, 345, 435, 514, 580, 934, 1202
HpaII CCGG 5 cut(s) 222, 285, 414, 474, 807
HphI GGTGA 4 cut(s) 262, 469, 664, 673
Hpy166II GTNNAC 3 cut(s) 828, 1333, 1373
Hpy188I TCNGA 6 cut(s) 142, 182, 615, 1172, 1207, 1540
Hpy188III TCNNGA 6 cut(s) 33, 134, 302, 385, 1222, 1414
Hpy8I GTNNAC 3 cut(s) 828, 1333, 1373
Hpy99I CGWCG 2 cut(s) 296, 1139
HpyAV CCTTC 5 cut(s) 114, 136, 361, 838, 859
HpyCH4III ACNGT 3 cut(s) 420, 694, 1015
HpyCH4IV ACGT 2 cut(s) 291, 759
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 2 cut(s) 291, 759
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 3 cut(s) 264, 380, 741
KpnI GGTACC 2 cut(s) 952, 1364
KroI GCCGGC 2 cut(s) 221, 284
KroNI GCCGGC 2 cut(s) 223, 286
Ksp22I TGATCA 1 cut(s) 681
Kzo9I GATC 4 cut(s) 459, 645, 663, 681
LmnI GCTCC 1 cut(s) 1301
Lsp1109I GCAGC 7 cut(s) 28, 132, 457, 693, 799, 1027, 1240
LweI GCATC 2 cut(s) 949, 1449
MaeI CTAG 6 cut(s) 80, 117, 302, 1028, 1070, 1106
MaeII ACGT 2 cut(s) 291, 759
MaeIII GTNAC 4 cut(s) 268, 633, 1343, 1382
MalI GATC 4 cut(s) 461, 647, 665, 683
MboI GATC 4 cut(s) 459, 645, 663, 681
MboII GAAGA 5 cut(s) 169, 226, 271, 1159, 1520
MfeI CAATTG 1 cut(s) 1296
MhlI GDGCHC 1 cut(s) 756
MluCI AATT 1 cut(s) 1296
MluI ACGCGT 1 cut(s) 600
MlyI GAGTC 2 cut(s) 92, 131
MmeI TCCRAC 1 cut(s) 402
Mph1103I ATGCAT 2 cut(s) 995, 1442
MroNI GCCGGC 2 cut(s) 221, 284
MroXI GAANNNNTTC 1 cut(s) 848
MseI TTAA 2 cut(s) 606, 873
MslI CAYNNNNRTG 2 cut(s) 653, 992
MspA1I CMGCKG 3 cut(s) 589, 702, 790
MspI CCGG 5 cut(s) 222, 285, 414, 474, 807
MspR9I CCNGG 3 cut(s) 308, 766, 808
MunI CAATTG 1 cut(s) 1296
Mva1269I GAATGC 2 cut(s) 1042, 1428
MvaI CCWGG 2 cut(s) 308, 766
MvnI CGCG 5 cut(s) 171, 596, 602, 668, 743
NaeI GCCGGC 2 cut(s) 223, 286
NciI CCSGG 1 cut(s) 808
NdeI CATATG 1 cut(s) 989
NdeII GATC 4 cut(s) 459, 645, 663, 681
NgoMIV GCCGGC 2 cut(s) 221, 284
NlaIV GGNNCC 5 cut(s) 48, 226, 412, 950, 1362
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 268, 633
NsiI ATGCAT 2 cut(s) 995, 1442
NspI RCATGY 4 cut(s) 430, 445, 1344, 1440
PaeR7I CTCGAG 2 cut(s) 31, 383
PceI AGGCCT 1 cut(s) 848
PciI ACATGT 1 cut(s) 426
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 330
PctI GAATGC 2 cut(s) 1042, 1428
PdiI GCCGGC 2 cut(s) 223, 286
PdmI GAANNNNTTC 1 cut(s) 848
PfeI GAWTC 7 cut(s) 197, 345, 435, 514, 580, 934, 1202
Pfl23II CGTACG 1 cut(s) 597
PleI GAGTC 2 cut(s) 91, 131
PpsI GAGTC 2 cut(s) 91, 131
PscI ACATGT 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 306, 764
PspFI CCCAGC 2 cut(s) 790, 944
PspGI CCWGG 2 cut(s) 306, 764
PspLI CGTACG 1 cut(s) 597
PspN4I GGNNCC 5 cut(s) 48, 226, 412, 950, 1362
PspPI GGNCC 3 cut(s) 224, 411, 1476
PstI CTGCAG 1 cut(s) 633
PstNI CAGNNNCTG 1 cut(s) 517
PvuII CAGCTG 3 cut(s) 589, 702, 790
RsaI GTAC 5 cut(s) 254, 521, 599, 950, 1362
RsaNI GTAC 5 cut(s) 253, 520, 598, 949, 1361
RseI CAYNNNNRTG 2 cut(s) 653, 992
SaqAI TTAA 2 cut(s) 606, 873
Sau3AI GATC 4 cut(s) 459, 645, 663, 681
Sau96I GGNCC 3 cut(s) 224, 411, 1476
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 2 cut(s) 92, 131
ScrFI CCNGG 3 cut(s) 308, 766, 808
SduI GDGCHC 1 cut(s) 756
SfaNI GCATC 2 cut(s) 949, 1449
SfcI CTRYAG 2 cut(s) 629, 1500
Sfr274I CTCGAG 2 cut(s) 31, 383
SinI GGWCC 1 cut(s) 1476
SlaI CTCGAG 2 cut(s) 31, 383
SmiMI CAYNNNNRTG 2 cut(s) 653, 992
SmlI CTYRAG 2 cut(s) 31, 383
SmoI CTYRAG 2 cut(s) 31, 383
SpeI ACTAGT 1 cut(s) 1105
Sse9I AATT 1 cut(s) 1296
SseBI AGGCCT 1 cut(s) 848
SspMI CTAG 6 cut(s) 80, 117, 302, 1028, 1070, 1106
StuI AGGCCT 1 cut(s) 848
StyD4I CCNGG 3 cut(s) 306, 764, 806
TaaI ACNGT 3 cut(s) 420, 694, 1015
TaiI ACGT 2 cut(s) 294, 762
TaqI TCGA 4 cut(s) 32, 324, 384, 1061
TasI AATT 1 cut(s) 1296
TatI WGTACW 1 cut(s) 252
TauI GCSGC 4 cut(s) 314, 557, 671, 746
TfiI GAWTC 7 cut(s) 197, 345, 435, 514, 580, 934, 1202
Tru1I TTAA 2 cut(s) 606, 873
Tru9I TTAA 2 cut(s) 606, 873
TscAI CASTG 1 cut(s) 699
TseFI GTSAC 2 cut(s) 268, 633
TseI GCWGC 7 cut(s) 16, 120, 445, 706, 787, 1040, 1228
Tsp45I GTSAC 2 cut(s) 268, 633
TspDTI ATGAA 6 cut(s) 100, 1010, 1049, 1080, 1135, 1450
TspGWI ACGGA 2 cut(s) 322, 537
TspRI CASTG 1 cut(s) 699
VpaK11BI GGWCC 1 cut(s) 1476
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 4 cut(s) 430, 445, 1344, 1440
XhoI CTCGAG 2 cut(s) 31, 383
XmnI GAANNNNTTC 1 cut(s) 848
XspI CTAG 6 cut(s) 80, 117, 302, 1028, 1070, 1106
ZrmI AGTACT 1 cut(s) 254
Zsp2I ATGCAT 2 cut(s) 995, 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.