Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003189

Physical Location & Seq

Genomic Coordinates Forward (+)

43502893 .. 43503975

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0263400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTCCCTCCAAAAGGACAATGTTGTTTGTGTGCCTCTTGGTTGCTGCAGTGGCAGTAGTTGTTCCGATAGCTCAAGGGCAGACCACTGGAGGCCCCGTCGGGCCTCTTCGTGGTGTCATCCGCATCCAAGGCACAGTCTTTTGCAGTGTCAATGGCAGTGCCACTGTTGGTACCAACGGCACCATTCTTACCCCAGCATTTGCAAATGCCACCGTCCAACTACGTTGCGGAGCAGGAAATGGTACTGTGTTTGGATCTGCGCAAACCAACTCCAACGGAATGTTTTCAATCTTGTTAGACGGTTCCTACTTTATACCAGCTCAAATATTGTCCGGATGCCGTGCTGTGGTTACAACACCACTTGTCAGTTGCAACGCCACCCTCGCTTCAGCCGGAACTCTCACATTCACCTTGACTTCACTCGGAAACACCACTGTTGGCCCCTTGCCCATCTTCATTATCGGTATATCCGGGATGTTCAATTCAACCAATATAACAATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

169

Amino Acids

17.01

Weight (kDa)

9.4

Isoelectric Point (pI)

18.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26590 AT3G26590 AT5G38030
fragaria_vesca	FvH4_4g25500 FvH4_4g25500 FvH4_4g25510
malus_domestica	MD13G1102100.v1.1 MD16G1102700.v1.1
prunus_persica	Prupe.1G243700_v2.0.a1
pyrus_communis	pycom13g08920 pycom13g08930 pycom16g08710 pycom16g08730
rosa_chinensis	RchiOBHm_Chr4g0432851 RchiOBHm_Chr4g0432861
rosa_laevigata	RLG00000006804 RLG00000006805 RLG00000030674
rosa_multiflora	Rmu_co8449711.1_g000001 Rmu_sc0005234.1_g000013
rosa_roxburghii	Rroxscaffold_5G00374290 Rroxscaffold_5G00374300
rosa_rugosa	Rorug04G0263200 Rorug04G0263300 Rorug04G0263400 Rorug04G0263500 Rorug04G0263600
rosa_samantha	Rh4AG317500 Rh4AG317700 Rh4BG325800 Rh4CG340800 Rh4CG340900 Rh4CG341000 Rh4DG320900 Rh4DG321000
rosa_wichuraiana	Rw4G027610 Rw4G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	2 cut(s)	173, 182
AccIII	TCCGGA	1 cut(s)	335
AciI	CCGC	2 cut(s)	124, 231
AclWI	GGATC	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	175, 247
AfiI	CCNNNNNNNGG	3 cut(s)	15, 113, 349
AgsI	TTSAA	3 cut(s)	291, 484, 489
AluBI	AGCT	2 cut(s)	74, 323
AluI	AGCT	2 cut(s)	74, 323
AlwI	GGATC	1 cut(s)	265
Aor13HI	TCCGGA	1 cut(s)	335
AoxI	GGCC	3 cut(s)	94, 104, 442
ApeKI	GCWGC	1 cut(s)	47
AseI	ATTAAT	1 cut(s)	504
Asp700I	GAANNNNTTC	1 cut(s)	286
Asp718I	GGTACC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	95, 104, 443
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	1 cut(s)	403
BanI	GGYRCC	2 cut(s)	173, 182
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	2 cut(s)	196, 327
BcnI	CCSGG	1 cut(s)	475
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	475
BmgT120I	GGNCC	3 cut(s)	95, 104, 443
BmiI	GGNNCC	6 cut(s)	6, 97, 175, 184, 307, 445
BmrFI	CCNGG	1 cut(s)	475
BmsI	GCATC	2 cut(s)	135, 329
BpmI	CTGGAG	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	475
BsaJI	CCNNGG	1 cut(s)	130
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 113, 349
Bse1I	ACTGG	1 cut(s)	94
BseAI	TCCGGA	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	4 cut(s)	120, 126, 344, 483
BseLI	CCNNNNNNNGG	3 cut(s)	15, 113, 349
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	196
BshFI	GGCC	3 cut(s)	96, 106, 444
BshNI	GGYRCC	2 cut(s)	173, 182
BsiSI	CCGG	3 cut(s)	336, 396, 474
BslI	CCNNNNNNNGG	3 cut(s)	15, 113, 349
BsnI	GGCC	3 cut(s)	96, 106, 444
Bsp13I	TCCGGA	1 cut(s)	335
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	2 cut(s)	124, 231
BspANI	GGCC	3 cut(s)	96, 106, 444
BspEI	TCCGGA	1 cut(s)	335
BspLI	GGNNCC	6 cut(s)	6, 97, 175, 184, 307, 445
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	1 cut(s)	265
BspT107I	GGYRCC	2 cut(s)	173, 182
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	6 cut(s)	139, 169, 217, 250, 305, 439
Bst6I	CTCTTC	1 cut(s)	114
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	4 cut(s)	120, 126, 344, 483
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 132, 386
BstSCI	CCNGG	1 cut(s)	473
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	96, 106, 444
BtsCI	GGATG	4 cut(s)	120, 126, 344, 483
BtsI	GCAGTG	3 cut(s)	57, 154, 166
BtsIMutI	CAGTG	6 cut(s)	57, 87, 154, 165, 166, 435
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	95, 104, 443
Csp6I	GTAC	2 cut(s)	174, 246
CviJI	RGCY	7 cut(s)	5, 74, 96, 106, 323, 395, 444
CviKI_1	RGCY	7 cut(s)	5, 74, 96, 106, 323, 395, 444
CviQI	GTAC	2 cut(s)	174, 246
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	375
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaiI	YATR	3 cut(s)	317, 470, 497
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	4 cut(s)	107, 113, 351, 490
Fsp4HI	GCNGC	1 cut(s)	48
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	96, 106, 444
HapII	CCGG	3 cut(s)	336, 396, 474
HhaI	GCGC	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HpaII	CCGG	3 cut(s)	336, 396, 474
HphI	GGTGA	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	69, 428
Hpy188III	TCNNGA	1 cut(s)	336
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	6 cut(s)	139, 169, 217, 250, 305, 439
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	4 cut(s)	50, 147, 206, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 132, 386
HpySE526I	ACGT	1 cut(s)	226
HspAI	GCGC	1 cut(s)	263
Kpn2I	TCCGGA	1 cut(s)	335
KpnI	GGTACC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	257
LmnI	GCTCC	2 cut(s)	10, 233
LpnPI	CCDG	7 cut(s)	75, 210, 222, 333, 349, 409, 487
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	135, 329
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	2 cut(s)	101, 448
MflI	RGATCY	1 cut(s)	257
MluCI	AATT	3 cut(s)	484, 501, 505
MmeI	TCCRAC	2 cut(s)	244, 300
MnlI	CCTC	5 cut(s)	19, 47, 86, 117, 395
MroI	TCCGGA	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	286
MseI	TTAA	2 cut(s)	504, 508
MspI	CCGG	3 cut(s)	336, 396, 474
MspR9I	CCNGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	3 cut(s)	53, 132, 386
NciI	CCSGG	1 cut(s)	475
NdeII	GATC	1 cut(s)	257
NlaIV	GGNNCC	6 cut(s)	6, 97, 175, 184, 307, 445
NsbI	TGCGCA	1 cut(s)	264
PacI	TTAATTAA	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	286
PfoI	TCCNGGA	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	196
PspN4I	GGNNCC	6 cut(s)	6, 97, 175, 184, 307, 445
PspPI	GGNCC	3 cut(s)	95, 104, 443
PstI	CTGCAG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	2 cut(s)	175, 247
RsaNI	GTAC	2 cut(s)	174, 246
SaqAI	TTAA	2 cut(s)	504, 508
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	257
Sau96I	GGNCC	3 cut(s)	95, 104, 443
ScrFI	CCNGG	1 cut(s)	475
SetI	ASST	4 cut(s)	76, 229, 325, 416
SfaNI	GCATC	2 cut(s)	135, 329
SfcI	CTRYAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	484, 501, 505
SsiI	CCGC	2 cut(s)	124, 231
SspI	AATATT	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	6 cut(s)	139, 169, 217, 250, 305, 439
TaiI	ACGT	1 cut(s)	229
TasI	AATT	3 cut(s)	484, 501, 505
Tru1I	TTAA	2 cut(s)	504, 508
Tru9I	TTAA	2 cut(s)	504, 508
TscAI	CASTG	6 cut(s)	57, 94, 154, 166, 172, 442
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	448
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	6 cut(s)	57, 94, 154, 166, 172, 442
VspI	ATTAAT	1 cut(s)	504
XagI	CCTNNNNNAGG	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.