Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003189

Physical Location & Seq

Genomic Coordinates Reverse (-)

43507284 .. 43510022

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0263500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATTCCGGCTAATGTTAAGTTCGACTTGAGAGTTCCGGTTGAAGACAGAGTGGAGTCGCAGCTCGCAAGTGGTGCAGCAACCACAACACGACATCCGGATAATAGTCGAGCGAGTGTAAAGAAGAAACTGTACGTTCACCCTGATTCAAAACTGTCCCGAGGAGTCGGTAATAAGATACCTGTAATCGAAAACTTGGGAGCTACAGAGGACCAATTTGACACCATTGATTTGTTTGACAATGAAATTGTTAAGCTGGAAAACTTGCCCTATCTTAATCGTTTGCGTACTTTGATTATTAATAACAATAGAATTACCCGTATCAATCCCAACATTGGAGAGTTCTTGCCGAAGTTACATATATACTTTAGTACTTACCAACAACAGGCTAGTCAACTTGGTAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

136

Amino Acids

15.46

Weight (kDa)

8.96

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_9	PF14580	57 - 125	5.3e-31	Leucine-rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26590 AT3G26590 AT5G38030
fragaria_vesca	FvH4_4g25500 FvH4_4g25500 FvH4_4g25510
malus_domestica	MD13G1102100.v1.1 MD16G1102700.v1.1
prunus_persica	Prupe.1G243700_v2.0.a1
pyrus_communis	pycom13g08920 pycom13g08930 pycom16g08710 pycom16g08730
rosa_chinensis	RchiOBHm_Chr4g0432851 RchiOBHm_Chr4g0432861
rosa_laevigata	RLG00000006804 RLG00000006805 RLG00000030674
rosa_multiflora	Rmu_co8449711.1_g000001 Rmu_sc0005234.1_g000013
rosa_roxburghii	Rroxscaffold_5G00374290 Rroxscaffold_5G00374300
rosa_rugosa	Rorug04G0263200 Rorug04G0263300 Rorug04G0263400 Rorug04G0263500 Rorug04G0263600
rosa_samantha	Rh4AG317500 Rh4AG317700 Rh4BG325800 Rh4CG340800 Rh4CG340900 Rh4CG341000 Rh4DG320900 Rh4DG321000
rosa_wichuraiana	Rw4G027610 Rw4G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	97
AfaI	GTAC	3 cut(s)	134, 289, 373
AfiI	CCNNNNNNNGG	2 cut(s)	335, 385
AgsI	TTSAA	2 cut(s)	44, 150
AluBI	AGCT	3 cut(s)	64, 203, 256
AluI	AGCT	3 cut(s)	64, 203, 256
Ama87I	CYCGRG	1 cut(s)	159
Aor13HI	TCCGGA	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	61, 77
AseI	ATTAAT	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	211
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	73, 89
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	62, 78
BlsI	GCNGC	2 cut(s)	63, 79
BmcAI	AGTACT	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	2 cut(s)	37, 97
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 385
BseAI	TCCGGA	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	335, 385
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	73, 89
BsgI	GTGCAG	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	8, 38, 98
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	335, 385
BsmFI	GGGAC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	159
Bsp13I	TCCGGA	1 cut(s)	97
BspEI	TCCGGA	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	132, 156
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	73, 89
BstV2I	GAAGAC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	133, 288, 372
CviJI	RGCY	5 cut(s)	11, 64, 203, 256, 389
CviKI_1	RGCY	5 cut(s)	11, 64, 203, 256, 389
CviQI	GTAC	3 cut(s)	133, 288, 372
Eco47I	GGWCC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	159
FaiI	YATR	3 cut(s)	360, 362, 364
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	62, 78
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	62, 78
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	2 cut(s)	62, 78
HapII	CCGG	3 cut(s)	8, 38, 98
HincII	GTYRAC	1 cut(s)	395
HindII	GTYRAC	1 cut(s)	395
HinfI	GANTC	4 cut(s)	4, 56, 146, 165
HpaII	CCGG	3 cut(s)	8, 38, 98
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	139, 395
Hpy188III	TCNNGA	2 cut(s)	98, 159
Hpy8I	GTNNAC	2 cut(s)	139, 395
HpyCH4III	ACNGT	2 cut(s)	132, 156
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	7 cut(s)	21, 51, 111, 156, 195, 242, 371
Lsp1109I	GCAGC	2 cut(s)	73, 89
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	354
MboII	GAAGA	2 cut(s)	56, 136
MluCI	AATT	3 cut(s)	215, 246, 312
MlyI	GAGTC	2 cut(s)	65, 174
MnlI	CCTC	2 cut(s)	155, 202
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	5 cut(s)	18, 252, 276, 300, 409
MspI	CCGG	3 cut(s)	8, 38, 98
MwoI	GCNNNNNNNGC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	4, 146
PkrI	GCNGC	2 cut(s)	63, 79
PleI	GAGTC	2 cut(s)	64, 173
PpsI	GAGTC	2 cut(s)	64, 173
PshBI	ATTAAT	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	3 cut(s)	134, 289, 373
RsaNI	GTAC	3 cut(s)	133, 288, 372
SaqAI	TTAA	5 cut(s)	18, 252, 276, 300, 409
SatI	GCNGC	2 cut(s)	62, 78
Sau96I	GGNCC	1 cut(s)	211
ScaI	AGTACT	1 cut(s)	373
SchI	GAGTC	2 cut(s)	65, 174
SetI	ASST	5 cut(s)	66, 138, 184, 205, 258
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	3 cut(s)	215, 246, 312
SspMI	CTAG	1 cut(s)	390
TaaI	ACNGT	2 cut(s)	132, 156
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	24, 109, 189
TasI	AATT	3 cut(s)	215, 246, 312
TatI	WGTACW	1 cut(s)	371
TfiI	GAWTC	2 cut(s)	4, 146
Tru1I	TTAA	5 cut(s)	18, 252, 276, 300, 409
Tru9I	TTAA	5 cut(s)	18, 252, 276, 300, 409
TseI	GCWGC	2 cut(s)	61, 77
TspDTI	ATGAA	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	211
VspI	ATTAAT	1 cut(s)	300
XspI	CTAG	1 cut(s)	390
ZrmI	AGTACT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.