Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003189

Physical Location & Seq

Genomic Coordinates Reverse (-)

5817583 .. 5818122

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGGAGTGCGCTTGAGACGTTGTGCGGGCAAGCGTTCGGAGCAGGGCAGCTGGACATGTTAGGAATCTACATGCAGAGGTCGTGGGTGATCCTCAACGCCACCGCCGTACTGCTCTCCTTTCTTTACATTTTTGCAGAGCAACTACTCAAAATGATAGGGCAGACCGACGACATATCGAAGGCGGCGGGACAGTTCGCGATATGGATGATACCACAACTGTTCGCCTACGCCATGAACTTCCCGCTAGCCAAGTTCTTGCAGTCGCAGAGCAAGATCATGGTCATGGCAGCGATATCCGCAGGGGCTTTGGTCTTGCACACGTTGTTCAGCTGGCTATTGATGTTCAAACTCGGGTGGGGACTGGTGGGCGCCGCCGTCGTGCTCAACGCGTCCTGGTGGTTCATAGTTTTGGCTCAGTTGATTTATATATTTTCTGGGACATGTGGTCGAGCTTGGGTTGGGTTCTCGTTGAAGGCCTTTCATAATCTTTGGGATTTTGTTAAGTTGTCTATGGCTTCTGGAATCATGCTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

180

Amino Acids

19.84

Weight (kDa)

9.0

Isoelectric Point (pI)

26.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 113	1.4e-24	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26590 AT3G26590 AT5G38030
fragaria_vesca	FvH4_4g25500 FvH4_4g25500 FvH4_4g25510
malus_domestica	MD13G1102100.v1.1 MD16G1102700.v1.1
prunus_persica	Prupe.1G243700_v2.0.a1
pyrus_communis	pycom13g08920 pycom13g08930 pycom16g08710 pycom16g08730
rosa_chinensis	RchiOBHm_Chr4g0432851 RchiOBHm_Chr4g0432861
rosa_laevigata	RLG00000006804 RLG00000006805 RLG00000030674
rosa_multiflora	Rmu_co8449711.1_g000001 Rmu_sc0005234.1_g000013
rosa_roxburghii	Rroxscaffold_5G00374290 Rroxscaffold_5G00374300
rosa_rugosa	Rorug04G0263200 Rorug04G0263300 Rorug04G0263400 Rorug04G0263500 Rorug04G0263600
rosa_samantha	Rh4AG317500 Rh4AG317700 Rh4BG325800 Rh4CG340800 Rh4CG340900 Rh4CG341000 Rh4DG320900 Rh4DG321000
rosa_wichuraiana	Rw4G027610 Rw4G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccII	CGCG	2 cut(s)	200, 392
AciI	CCGC	7 cut(s)	27, 105, 185, 188, 245, 300, 375
AclWI	GGATC	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	111
AflIII	ACRYGT	4 cut(s)	57, 321, 390, 443
AgsI	TTSAA	2 cut(s)	349, 475
AhdI	GACNNNNNGTC	1 cut(s)	447
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	3 cut(s)	52, 333, 455
AluI	AGCT	3 cut(s)	52, 333, 455
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	2 cut(s)	49, 290
AspLEI	GCGC	2 cut(s)	13, 374
AsuHPI	GGTGA	1 cut(s)	100
AsuNHI	GCTAGC	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	61, 302
BceAI	ACGGC	2 cut(s)	92, 362
BciT130I	CCWGG	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	375
BisI	GCNGC	4 cut(s)	50, 186, 291, 375
BlsI	GCNGC	4 cut(s)	51, 187, 292, 376
Bme1390I	CCNGG	1 cut(s)	397
BmeRI	GACNNNNNGTC	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	61, 302
Bsh1236I	CGCG	2 cut(s)	200, 392
BshFI	GGCC	1 cut(s)	479
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	353
BslFI	GGGAC	3 cut(s)	204, 375, 454
BsmAI	GTCTC	1 cut(s)	11
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	3 cut(s)	204, 375, 454
BsnI	GGCC	1 cut(s)	479
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	90, 276
Bsp68I	TCGCGA	1 cut(s)	200
BspACI	CCGC	7 cut(s)	27, 105, 185, 188, 245, 300, 375
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	2 cut(s)	200, 392
BspLI	GGNNCC	1 cut(s)	373
BspOI	GCTAGC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	369
BssMI	GATC	2 cut(s)	90, 276
BssNI	GRCGYC	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	2 cut(s)	195, 222
BstACI	GRCGYC	1 cut(s)	372
BstC8I	GCNNGC	4 cut(s)	29, 33, 249, 335
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	2 cut(s)	200, 392
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	13, 374
BstKTI	GATC	2 cut(s)	93, 279
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	2 cut(s)	90, 276
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 299
BstNI	CCWGG	1 cut(s)	397
BstNSI	RCATGY	3 cut(s)	61, 76, 447
BstSCI	CCNGG	1 cut(s)	395
BstUI	CGCG	2 cut(s)	200, 392
BstV1I	GCAGC	2 cut(s)	61, 302
BsuRI	GGCC	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	213
BtuMI	TCGCGA	1 cut(s)	200
Cac8I	GCNNGC	4 cut(s)	29, 33, 249, 335
CfoI	GCGC	2 cut(s)	13, 374
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	7 cut(s)	58, 73, 235, 280, 286, 444, 529
CviJI	RGCY	9 cut(s)	52, 251, 308, 333, 337, 416, 455, 479, 518
CviKI_1	RGCY	9 cut(s)	52, 251, 308, 333, 337, 416, 455, 479, 518
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	417
DinI	GGCGCC	1 cut(s)	373
DpnI	GATC	2 cut(s)	92, 278
DpnII	GATC	2 cut(s)	90, 276
DriI	GACNNNNNGTC	1 cut(s)	447
Eam1105I	GACNNNNNGTC	1 cut(s)	447
Eco147I	AGGCCT	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	395
EcoRV	GATATC	1 cut(s)	297
EgeI	GGCGCC	1 cut(s)	373
EheI	GGCGCC	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	7 cut(s)	61, 76, 238, 283, 289, 447, 532
FaqI	GGGAC	3 cut(s)	204, 375, 454
FatI	CATG	7 cut(s)	57, 72, 234, 279, 285, 443, 528
FauI	CCCGC	3 cut(s)	20, 181, 252
Fnu4HI	GCNGC	4 cut(s)	50, 186, 291, 375
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	4 cut(s)	50, 186, 291, 375
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	2 cut(s)	12, 373
GluI	GCNGC	4 cut(s)	50, 186, 291, 375
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	479
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	2 cut(s)	13, 374
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	7 cut(s)	61, 76, 238, 283, 289, 447, 532
Hin6I	GCGC	2 cut(s)	11, 372
HinP1I	GCGC	2 cut(s)	11, 372
HinfI	GANTC	2 cut(s)	66, 525
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	2 cut(s)	199, 522
Hpy99I	CGWCG	2 cut(s)	173, 383
HpyAV	CCTTC	2 cut(s)	175, 469
HpyCH4III	ACNGT	2 cut(s)	195, 222
HpyCH4IV	ACGT	2 cut(s)	20, 323
HpyCH4V	TGCA	4 cut(s)	76, 137, 262, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 299
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	2 cut(s)	20, 323
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	7 cut(s)	61, 76, 238, 283, 289, 447, 532
HspAI	GCGC	2 cut(s)	11, 372
KasI	GGCGCC	1 cut(s)	371
Kzo9I	GATC	2 cut(s)	90, 276
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	2 cut(s)	61, 302
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	20, 323
MalI	GATC	2 cut(s)	92, 278
MboI	GATC	2 cut(s)	90, 276
MhlI	GDGCHC	1 cut(s)	387
MluI	ACGCGT	1 cut(s)	390
Mly113I	GGCGCC	1 cut(s)	372
MnlI	CCTC	2 cut(s)	72, 104
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	52, 333
MspR9I	CCNGG	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	397
MvnI	CGCG	2 cut(s)	200, 392
MwoI	GCNNNNNNNGC	2 cut(s)	41, 299
NarI	GGCGCC	1 cut(s)	372
NdeII	GATC	2 cut(s)	90, 276
NheI	GCTAGC	1 cut(s)	247
NlaIII	CATG	7 cut(s)	61, 76, 238, 283, 289, 447, 532
NlaIV	GGNNCC	1 cut(s)	373
NruI	TCGCGA	1 cut(s)	200
NspI	RCATGY	3 cut(s)	61, 76, 447
PceI	AGGCCT	1 cut(s)	479
PciI	ACATGT	2 cut(s)	57, 443
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	66, 525
PkrI	GCNGC	4 cut(s)	51, 187, 292, 376
PluTI	GGCGCC	1 cut(s)	375
PscI	ACATGT	2 cut(s)	57, 443
Psp6I	CCWGG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	373
PvuII	CAGCTG	2 cut(s)	52, 333
RruI	TCGCGA	1 cut(s)	200
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	4 cut(s)	50, 186, 291, 375
Sau3AI	GATC	2 cut(s)	90, 276
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	6 cut(s)	23, 54, 83, 326, 335, 457
SfoI	GGCGCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	7 cut(s)	27, 105, 185, 188, 245, 300, 375
SspDI	GGCGCC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	395
TaaI	ACNGT	2 cut(s)	195, 222
TaiI	ACGT	2 cut(s)	23, 326
TaqI	TCGA	2 cut(s)	179, 451
TaqII	GACCGA	1 cut(s)	182
TauI	GCSGC	2 cut(s)	188, 377
TfiI	GAWTC	2 cut(s)	66, 525
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TseI	GCWGC	2 cut(s)	49, 290
TspDTI	ATGAA	3 cut(s)	251, 394, 473
XceI	RCATGY	3 cut(s)	61, 76, 447
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.