RLG00000030674

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
65535864 .. 65563407
27544 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030674

Sequence Viewer

Length: 1452 bp
ATGGCGAACAATAGGCAGCCACTTCTGTCCTCGAGAGACGACGTGGTGCCACCTCCTCAACATCAGGTGCATGACCACCCAGAGTCCCTTTCACCCGCAAACTCTTCTTTTATTTCCAGCAGCACATTCAATCCCGACTCCGATGACATCCCTCCCATCAATGGCGTCCGCGACTTCTTCCGTGAGTTCAAGGGGGAATACAAGAAGCTTTGGTTTCTCGCCGGCCCCGCAATCTTCACTTCCATATGCCAGTACTCTTTCGGCTCCGTCACCCAAATCTTCGCCGGCCAGATCGGCCCTCTAGACCTCGCCGCCATCTCCATCGAAAACTCCGTCATCGCCGGATTCTCCTTCGGCATTTTGCTTGGAATGGGGAGTGCGCTCGAGACGCTATGCGGGCAAGCGTTCGGGGCCGGACAGTTGGACATGTTAGGAATCTACATGCAGCGTTCGTGGGTGATCCTCAACTTAACCGTAGCGTTGTGCTTTCTCTACATATTTGCTCAGCAGATTCTGTACGGAATAGGGCAGACGGCGGAGATATCAAAGGCGGCGGGGGTGTTCGCTCTATATATGATTCCAGAGCTGTTCATGTACGCCAAGATCATGGTGATGGCGGTGATCGCGGCGGTGGTGCTGATCATACACATAGTGTTCAGCTGGCTGCTGATGTTGAAGCTCGGGTGGGGGCTGGTTGGCGCGGCGGTGGTGCTCAACGTGTCGTGGTGGCTTGTAGTGCTGTTGCAGCTGGGTTATATTGTGTCCGGAACTTGTGGTCGGGCGTGGACGCGCTTCTCTTGGAAGGCCTTCCATAATCTTTGGGAGTTTGTTAAGTTGTCTCTTGCTTCAGCACTCATGCTCTGCATGAACATCTTGGGATGGACAGTCATGGTGTCTCTAGGCATGAATGCAGCGATAAGTGTAAGAGTGTCGAATGAACTCGGAGGAGGAAACCCAAGAACAGCAAAGTTCTTAGTAGTAGTGGCTGTGATATCATCCTTTTTCGTCGGTGTTTTCATTTCCCTCATCCTCATCATCTTCAGAAACCAATATCCCGCCTTGTTTTCAAGTGATTCGGAAGTGCAGGCTCTCGTGAAGCAGCTTACGCCTTTGATGTCAACCTGCATTGTCATCAACAATGTTCAGCTTGTACTATCTGGTGTTGCAATTGGAGCAGGATGGCAAGCAGCTGTGGCCTATGTGAACATGGCATGTTACTATGTAGTTGGGGTACCTTTGGGTTTACTCTTTGGATACTACTTTGACTGGGGTGTTGAGGGTATCTGGAGTGGAATGCTGATAGGGACATACATTCAAACTATTGTCCTTTTCACCATGGTTTATAGGACCAACTGGAACAAAGAGGCTTCTATAGCAGAAGACAGGATAAAGAAATGGGGAGGCCAATCAGGCAATCCCATTGACAAGGAGAGCAACAGTGCAACAACATAG

Protein Analysis

484

Amino Acids

52.88

Weight (kDa)

6.52

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 76 - 207 1.3e-20 MatE
MatE PF01554 283 - 415 7.8e-25 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1130
Acc65I GGTACC 1 cut(s) 1231
AccB1I GGYRCC 2 cut(s) 46, 1231
AccII CGCG 4 cut(s) 171, 626, 701, 790
AccIII TCCGGA 1 cut(s) 764
AclWI GGATC 1 cut(s) 454
AcoI YGGCCR 1 cut(s) 286
AcuI CTGAAG 2 cut(s) 831, 1024
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 652
AfaI GTAC 5 cut(s) 254, 518, 596, 1152, 1233
AfiI CCNNNNNNNGG 1 cut(s) 161
AflIII ACRYGT 2 cut(s) 426, 717
AgsI TTSAA 5 cut(s) 130, 190, 676, 1068, 1316
AjiI CACGTC 1 cut(s) 43
AluBI AGCT 8 cut(s) 208, 586, 660, 679, 748, 1102, 1147, 1190
AluI AGCT 8 cut(s) 208, 586, 660, 679, 748, 1102, 1147, 1190
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 4 cut(s) 30, 380, 843, 900
AlwI GGATC 1 cut(s) 454
AlwNI CAGNNNCTG 1 cut(s) 514
Ama87I CYCGRG 3 cut(s) 31, 383, 680
Aor13HI TCCGGA 1 cut(s) 764
AoxI GGCC 7 cut(s) 223, 286, 295, 411, 804, 1194, 1402
ApeKI GCWGC 8 cut(s) 16, 120, 445, 664, 745, 911, 1099, 1187
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
Asp700I GAANNNNTTC 1 cut(s) 806
Asp718I GGTACC 1 cut(s) 1231
AspLEI GCGC 3 cut(s) 382, 701, 792
AspS9I GGNCC 4 cut(s) 224, 296, 411, 1347
AsuHPI GGTGA 6 cut(s) 84, 262, 469, 622, 631, 1324
AvaI CYCGRG 3 cut(s) 31, 383, 680
AvaII GGWCC 1 cut(s) 1347
BanI GGYRCC 2 cut(s) 46, 1231
BauI CACGAG 1 cut(s) 1091
BbsI GAAGAC 1 cut(s) 1386
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 8 cut(s) 28, 132, 457, 651, 757, 923, 1111, 1199
BccI CCATC 6 cut(s) 164, 323, 329, 607, 873, 1173
BceAI ACGGC 1 cut(s) 549
BciVI GTATCC 1 cut(s) 1247
BclI TGATCA 1 cut(s) 639
BcoDI GTCTC 4 cut(s) 30, 380, 843, 900
BfaI CTAG 2 cut(s) 302, 899
BfmI CTRYAG 1 cut(s) 1371
BfuAI ACCTGC 1 cut(s) 1130
BfuI GTATCC 1 cut(s) 1247
BglI GCCNNNNNGGC 2 cut(s) 294, 1410
BlpI GCTNAGC 1 cut(s) 504
BmcAI AGTACT 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 1347
BmeT110I CYCGRG 3 cut(s) 31, 383, 680
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 4 cut(s) 224, 296, 411, 1347
BmiI GGNNCC 5 cut(s) 48, 226, 265, 412, 1233
BmrI ACTGGG 1 cut(s) 1276
BmuI ACTGGG 1 cut(s) 1276
BpiI GAAGAC 1 cut(s) 1386
BpmI CTGGAG 1 cut(s) 1306
Bpu1102I GCTNAGC 1 cut(s) 504
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 1335
BsaWI WCCGGW 1 cut(s) 764
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 2 cut(s) 221, 284
Bse1I ACTGG 3 cut(s) 250, 1271, 1358
BseAI TCCGGA 1 cut(s) 764
BseDI CCNNGG 1 cut(s) 1335
BseGI GGATG 5 cut(s) 147, 884, 995, 1026, 1184
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 518
BseNI ACTGG 3 cut(s) 250, 1271, 1358
BseRI GAGGAG 2 cut(s) 45, 960
BseXI GCAGC 8 cut(s) 28, 132, 457, 651, 757, 923, 1111, 1199
BseYI CCCAGC 1 cut(s) 748
BsgI GTGCAG 1 cut(s) 1103
Bsh1236I CGCG 4 cut(s) 171, 626, 701, 790
BshFI GGCC 7 cut(s) 225, 288, 297, 413, 806, 1196, 1404
BshNI GGYRCC 2 cut(s) 46, 1231
BsiHKAI GWGCWC 1 cut(s) 714
BsiHKCI CYCGRG 3 cut(s) 31, 383, 680
BsiSI CCGG 5 cut(s) 222, 285, 342, 414, 765
BslFI GGGAC 2 cut(s) 70, 1318
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 4 cut(s) 30, 380, 843, 900
BsmBI CGTCTC 2 cut(s) 30, 380
BsmFI GGGAC 2 cut(s) 70, 1318
BsmI GAATGC 2 cut(s) 913, 1299
BsnI GGCC 7 cut(s) 225, 288, 297, 413, 806, 1196, 1404
BsoBI CYCGRG 3 cut(s) 31, 383, 680
Bsp1286I GDGCHC 1 cut(s) 714
Bsp13I TCCGGA 1 cut(s) 764
Bsp143I GATC 5 cut(s) 291, 459, 603, 621, 639
Bsp1720I GCTNAGC 1 cut(s) 504
Bsp19I CCATGG 1 cut(s) 1335
BspANI GGCC 7 cut(s) 225, 288, 297, 413, 806, 1196, 1404
BspCNI CTCAG 1 cut(s) 517
BspEI TCCGGA 1 cut(s) 764
BspFNI CGCG 4 cut(s) 171, 626, 701, 790
BspLI GGNNCC 5 cut(s) 48, 226, 265, 412, 1233
BspMI ACCTGC 1 cut(s) 1130
BspPI GGATC 1 cut(s) 454
BspT107I GGYRCC 2 cut(s) 46, 1231
BsrFI RCCGGY 2 cut(s) 221, 284
BsrI ACTGG 3 cut(s) 250, 1271, 1358
BssAI RCCGGY 2 cut(s) 221, 284
BssECI CCNNGG 1 cut(s) 1335
BssMI GATC 5 cut(s) 291, 459, 603, 621, 639
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 1091
BssT1I CCWWGG 1 cut(s) 1335
Bst2BI CACGAG 1 cut(s) 1091
Bst4CI ACNGT 4 cut(s) 420, 475, 886, 1439
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 7 cut(s) 223, 286, 398, 402, 662, 1086, 1185
BstDEI CTNAG 2 cut(s) 504, 973
BstDSI CCRYGG 1 cut(s) 1335
BstF5I GGATG 5 cut(s) 147, 884, 995, 1026, 1184
BstFNI CGCG 4 cut(s) 171, 626, 701, 790
BstHHI GCGC 3 cut(s) 382, 701, 792
BstKTI GATC 5 cut(s) 294, 462, 606, 624, 642
BstMAI GTCTC 4 cut(s) 30, 380, 843, 900
BstMBI GATC 5 cut(s) 291, 459, 603, 621, 639
BstNSI RCATGY 3 cut(s) 430, 445, 1215
BstSFI CTRYAG 1 cut(s) 1371
BstUI CGCG 4 cut(s) 171, 626, 701, 790
BstV1I GCAGC 8 cut(s) 28, 132, 457, 651, 757, 923, 1111, 1199
BstV2I GAAGAC 1 cut(s) 1386
BstXI CCANNNNNNTGG 1 cut(s) 607
BsuI GTATCC 1 cut(s) 1247
BsuRI GGCC 7 cut(s) 225, 288, 297, 413, 806, 1196, 1404
BtgI CCRYGG 1 cut(s) 1335
BtgZI GCGATG 1 cut(s) 322
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 5 cut(s) 147, 884, 995, 1026, 1184
BtsIMutI CAGTG 1 cut(s) 1444
BveI ACCTGC 1 cut(s) 1130
Cac8I GCNNGC 7 cut(s) 223, 286, 398, 402, 662, 1086, 1185
CaiI CAGNNNCTG 1 cut(s) 514
CfoI GCGC 3 cut(s) 382, 701, 792
Cfr10I RCCGGY 2 cut(s) 221, 284
Cfr13I GGNCC 4 cut(s) 224, 296, 411, 1347
CseI GACGC 3 cut(s) 154, 397, 796
Csp6I GTAC 5 cut(s) 253, 517, 595, 1151, 1232
CviQI GTAC 5 cut(s) 253, 517, 595, 1151, 1232
DdeI CTNAG 2 cut(s) 504, 973
DpnI GATC 5 cut(s) 293, 461, 605, 623, 641
DpnII GATC 5 cut(s) 291, 459, 603, 621, 639
DraIII CACNNNGTG 1 cut(s) 652
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 551
Eco130I CCWWGG 1 cut(s) 1335
Eco147I AGGCCT 1 cut(s) 806
Eco32I GATATC 2 cut(s) 543, 993
Eco47I GGWCC 1 cut(s) 1347
Eco57I CTGAAG 2 cut(s) 831, 1024
Eco88I CYCGRG 3 cut(s) 31, 383, 680
EcoRV GATATC 2 cut(s) 543, 993
EcoT14I CCWWGG 1 cut(s) 1335
ErhI CCWWGG 1 cut(s) 1335
Esp3I CGTCTC 2 cut(s) 30, 380
FaqI GGGAC 2 cut(s) 70, 1318
FauI CCCGC 5 cut(s) 103, 235, 389, 547, 1063
FauNDI CATATG 1 cut(s) 245
FbaI TGATCA 1 cut(s) 639
FokI GGATG 5 cut(s) 134, 891, 982, 1013, 1191
FspBI CTAG 2 cut(s) 302, 899
GlaI GCGC 3 cut(s) 381, 700, 791
GsaI CCCAGC 1 cut(s) 752
GsuI CTGGAG 1 cut(s) 1306
HaeIII GGCC 7 cut(s) 225, 288, 297, 413, 806, 1196, 1404
HapII CCGG 5 cut(s) 222, 285, 342, 414, 765
HgaI GACGC 3 cut(s) 154, 397, 796
HhaI GCGC 3 cut(s) 382, 701, 792
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 3 cut(s) 380, 699, 790
HinP1I GCGC 3 cut(s) 380, 699, 790
HincII GTYRAC 1 cut(s) 1119
HindII GTYRAC 1 cut(s) 1119
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 7 cut(s) 83, 137, 345, 435, 511, 577, 1073
HpaII CCGG 5 cut(s) 222, 285, 342, 414, 765
HphI GGTGA 6 cut(s) 84, 262, 469, 622, 631, 1324
Hpy166II GTNNAC 4 cut(s) 786, 1119, 1204, 1244
Hpy188I TCNGA 4 cut(s) 142, 944, 1043, 1078
Hpy188III TCNNGA 8 cut(s) 33, 134, 302, 385, 581, 765, 1093, 1285
Hpy8I GTNNAC 4 cut(s) 786, 1119, 1204, 1244
Hpy99I CGWCG 2 cut(s) 44, 1010
HpyAV CCTTC 3 cut(s) 361, 796, 817
HpyCH4III ACNGT 4 cut(s) 420, 475, 886, 1439
HpyCH4IV ACGT 2 cut(s) 42, 717
HpyCH4V TGCA 9 cut(s) 70, 445, 745, 864, 911, 1084, 1125, 1166, 1442
HpyF3I CTNAG 2 cut(s) 504, 973
HpySE526I ACGT 2 cut(s) 42, 717
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 3 cut(s) 380, 699, 790
Kpn2I TCCGGA 1 cut(s) 764
KpnI GGTACC 1 cut(s) 1235
KroI GCCGGC 2 cut(s) 221, 284
KroNI GCCGGC 2 cut(s) 223, 286
Ksp22I TGATCA 1 cut(s) 639
Kzo9I GATC 5 cut(s) 291, 459, 603, 621, 639
LmnI GCTCC 2 cut(s) 269, 1172
Lsp1109I GCAGC 8 cut(s) 28, 132, 457, 651, 757, 923, 1111, 1199
MaeI CTAG 2 cut(s) 302, 899
MaeII ACGT 2 cut(s) 42, 717
MaeIII GTNAC 2 cut(s) 268, 1214
MalI GATC 5 cut(s) 293, 461, 605, 623, 641
MboI GATC 5 cut(s) 291, 459, 603, 621, 639
MboII GAAGA 6 cut(s) 96, 169, 226, 271, 1030, 1391
MfeI CAATTG 1 cut(s) 1167
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 1 cut(s) 1167
MlyI GAGTC 2 cut(s) 92, 131
MmeI TCCRAC 1 cut(s) 402
MroI TCCGGA 1 cut(s) 764
MroNI GCCGGC 2 cut(s) 221, 284
MroXI GAANNNNTTC 1 cut(s) 806
MseI TTAA 2 cut(s) 470, 831
MslI CAYNNNNRTG 1 cut(s) 611
MspA1I CMGCKG 3 cut(s) 660, 748, 1190
MspI CCGG 5 cut(s) 222, 285, 342, 414, 765
MunI CAATTG 1 cut(s) 1167
Mva1269I GAATGC 2 cut(s) 913, 1299
MvnI CGCG 4 cut(s) 171, 626, 701, 790
NaeI GCCGGC 2 cut(s) 223, 286
NcoI CCATGG 1 cut(s) 1335
NdeI CATATG 1 cut(s) 245
NdeII GATC 5 cut(s) 291, 459, 603, 621, 639
NgoMIV GCCGGC 2 cut(s) 221, 284
NlaIV GGNNCC 5 cut(s) 48, 226, 265, 412, 1233
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 3 cut(s) 430, 445, 1215
PaeR7I CTCGAG 2 cut(s) 31, 383
PceI AGGCCT 1 cut(s) 806
PciI ACATGT 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 2 cut(s) 913, 1299
PdiI GCCGGC 2 cut(s) 223, 286
PdmI GAANNNNTTC 1 cut(s) 806
PfeI GAWTC 5 cut(s) 345, 435, 511, 577, 1073
PleI GAGTC 2 cut(s) 91, 131
PpsI GAGTC 2 cut(s) 91, 131
PscI ACATGT 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 748
PspN4I GGNNCC 5 cut(s) 48, 226, 265, 412, 1233
PspPI GGNCC 4 cut(s) 224, 296, 411, 1347
PstNI CAGNNNCTG 1 cut(s) 514
PvuII CAGCTG 3 cut(s) 660, 748, 1190
RsaI GTAC 5 cut(s) 254, 518, 596, 1152, 1233
RsaNI GTAC 5 cut(s) 253, 517, 595, 1151, 1232
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 2 cut(s) 470, 831
Sau3AI GATC 5 cut(s) 291, 459, 603, 621, 639
Sau96I GGNCC 4 cut(s) 224, 296, 411, 1347
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 2 cut(s) 92, 131
SduI GDGCHC 1 cut(s) 714
SfcI CTRYAG 1 cut(s) 1371
SfiI GGCCNNNNNGGCC 1 cut(s) 294
Sfr274I CTCGAG 2 cut(s) 31, 383
SinI GGWCC 1 cut(s) 1347
SlaI CTCGAG 2 cut(s) 31, 383
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 2 cut(s) 31, 383
SmoI CTYRAG 2 cut(s) 31, 383
Sse9I AATT 1 cut(s) 1167
SseBI AGGCCT 1 cut(s) 806
SspMI CTAG 2 cut(s) 302, 899
StuI AGGCCT 1 cut(s) 806
StyI CCWWGG 1 cut(s) 1335
TaaI ACNGT 4 cut(s) 420, 475, 886, 1439
TaiI ACGT 2 cut(s) 45, 720
TaqI TCGA 4 cut(s) 32, 324, 384, 932
TasI AATT 1 cut(s) 1167
TatI WGTACW 2 cut(s) 252, 1150
TauI GCSGC 4 cut(s) 314, 554, 629, 704
TfiI GAWTC 5 cut(s) 345, 435, 511, 577, 1073
Tru1I TTAA 2 cut(s) 470, 831
Tru9I TTAA 2 cut(s) 470, 831
TscAI CASTG 1 cut(s) 1444
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 8 cut(s) 16, 120, 445, 664, 745, 911, 1099, 1187
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 5 cut(s) 580, 881, 920, 951, 1006
TspGWI ACGGA 4 cut(s) 170, 256, 322, 534
TspRI CASTG 1 cut(s) 1444
VpaK11BI GGWCC 1 cut(s) 1347
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 3 cut(s) 430, 445, 1215
XhoI CTCGAG 2 cut(s) 31, 383
XmnI GAANNNNTTC 1 cut(s) 806
XspI CTAG 2 cut(s) 302, 899
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.