Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003189

Physical Location & Seq

Genomic Coordinates Forward (+)

56976209 .. 56977388

Gene Structure 1180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGGAGAACAAACAGCCACTGCTGTCGCCAAGAGACGAGGTGGTGGGAGTTCCACAGCATCATCAACCGATGCACGACAACCTAGATTCCTTCCCTGCACCCGCAAACCCTTCTTTCATTTCCAGCACTACCTTCAATCCCGACTCCGGCGACATCCCACCCATCAATGGCGTCCGCGACTTCTTCCGAGAGTTCAACCGAGAATCGAAGAAGCTCTGGTTTCTCGCCGGCCCCGCCATCTTCACTTCACTATGCCAGTACTCTCTCGGCGCCGTCACTCAAGTCTTCGCCGGCCAGGTCAGCACCCTCGACCTCGCCGCCGTCTCCATCGAGAACTCGGTCATCGCTGGATTCTCCTTCGGCGCTTTGCTCGGCATGGGGAGTGCGCTTGAAACGCTGTGCGGCCAAGCGGTCGGAGCCGGACAGCTGGACATGTTAGGAATCTACATGCAGAGGTCGTGGGTGATCCTCAACGCCACCAGCGTAGTGTTGTGCTTTCTGTACATTTTTGCTCAGCAGATTCTGTACGGAATAGGACAGACGGCGGCGATTTCCAAGGCGGCGGGGGTGTTCGCCATATACATGATACCGCAGTTGTTCGCGTACGCCATGGTTTTTCCGTTGGCAAAGTTTCTGCAGTCGCAGAGCAAGATGATGGTGATGGCGGTGATCGCGGCGGTGACGCTGATATTGCACACGGTGTTCAGCTGGCTACTGATGTTGAAGCTCGGGTGGGGCCTGGTGGGAGCGGCGGTGGTGCTGAACGCGTCGTGGTGGATCATAGTGGTTTCTCAGATGGTGTACATTTTTTCCGGGACTTGTGGTCGGGCGTGGACTGGTTTCTCATGGAAGGCCTTCCATGGTCTGTGGTCGTTTGTTAAGTTGTCTCTTGCGTCGGCAGTCATGCTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

305

Amino Acids

33.27

Weight (kDa)

6.95

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	79 - 239	4e-32	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26590 AT3G26590 AT5G38030
fragaria_vesca	FvH4_4g25500 FvH4_4g25500 FvH4_4g25510
malus_domestica	MD13G1102100.v1.1 MD16G1102700.v1.1
prunus_persica	Prupe.1G243700_v2.0.a1
pyrus_communis	pycom13g08920 pycom13g08930 pycom16g08710 pycom16g08730
rosa_chinensis	RchiOBHm_Chr4g0432851 RchiOBHm_Chr4g0432861
rosa_laevigata	RLG00000006804 RLG00000006805 RLG00000030674
rosa_multiflora	Rmu_co8449711.1_g000001 Rmu_sc0005234.1_g000013
rosa_roxburghii	Rroxscaffold_5G00374290 Rroxscaffold_5G00374300
rosa_rugosa	Rorug04G0263200 Rorug04G0263300 Rorug04G0263400 Rorug04G0263500 Rorug04G0263600
rosa_samantha	Rh4AG317500 Rh4AG317700 Rh4BG325800 Rh4CG340800 Rh4CG340900 Rh4CG341000 Rh4DG320900 Rh4DG321000
rosa_wichuraiana	Rw4G027610 Rw4G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	752
AccII	CGCG	4 cut(s)	180, 605, 677, 770
AclWI	GGATC	2 cut(s)	463, 788
AcoI	YGGCCR	2 cut(s)	295, 406
AcyI	GRCGYC	2 cut(s)	174, 273
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	5 cut(s)	263, 506, 530, 608, 806
AfiI	CCNNNNNNNGG	2 cut(s)	149, 170
AflIII	ACRYGT	2 cut(s)	435, 768
AgsI	TTSAA	4 cut(s)	139, 199, 395, 727
AhdI	GACNNNNNGTC	1 cut(s)	825
AjnI	CCWGG	2 cut(s)	297, 741
AluBI	AGCT	4 cut(s)	217, 430, 711, 730
AluI	AGCT	4 cut(s)	217, 430, 711, 730
Alw26I	GTCTC	3 cut(s)	30, 331, 894
AlwI	GGATC	2 cut(s)	463, 788
AlwNI	CAGNNNCTG	2 cut(s)	22, 526
Ama87I	CYCGRG	1 cut(s)	731
AoxI	GGCC	5 cut(s)	232, 295, 406, 739, 855
Asp700I	GAANNNNTTC	1 cut(s)	857
AspLEI	GCGC	3 cut(s)	275, 368, 391
AspS9I	GGNCC	2 cut(s)	233, 739
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	4 cut(s)	478, 673, 682, 694
AvaI	CYCGRG	1 cut(s)	731
BaeI	ACNNNNGTAYC	2 cut(s)	581, 614
BanI	GGYRCC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	280
BccI	CCATC	6 cut(s)	173, 248, 338, 652, 658, 793
BceAI	ACGGC	3 cut(s)	260, 308, 561
BciT130I	CCWGG	2 cut(s)	299, 743
BcnI	CCSGG	1 cut(s)	817
BcoDI	GTCTC	3 cut(s)	30, 331, 894
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	638
BfoI	RGCGCY	2 cut(s)	276, 369
BisI	GCNGC	6 cut(s)	321, 406, 549, 564, 678, 753
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	6 cut(s)	322, 407, 550, 565, 679, 754
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	3 cut(s)	299, 743, 817
BmeRI	GACNNNNNGTC	1 cut(s)	825
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	2 cut(s)	233, 739
BmiI	GGNNCC	4 cut(s)	235, 274, 421, 740
BmrFI	CCNGG	3 cut(s)	299, 743, 817
BmsI	GCATC	2 cut(s)	63, 70
BpiI	GAAGAC	1 cut(s)	280
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	817
BsaHI	GRCGYC	2 cut(s)	174, 273
BsaJI	CCNNGG	3 cut(s)	558, 612, 862
BsaXI	ACNNNNNCTCC	2 cut(s)	741, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 170
Bse118I	RCCGGY	2 cut(s)	230, 293
Bse1I	ACTGG	2 cut(s)	259, 844
BseBI	CCWGG	2 cut(s)	299, 743
BseDI	CCNNGG	3 cut(s)	558, 612, 862
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	149, 170
BseMII	CTCAG	2 cut(s)	530, 809
BseNI	ACTGG	2 cut(s)	259, 844
BseRI	GAGGAG	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	4 cut(s)	180, 605, 677, 770
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	5 cut(s)	234, 297, 408, 741, 857
BshNI	GGYRCC	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	5 cut(s)	150, 231, 294, 423, 816
BsiWI	CGTACG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	832
BslI	CCNNNNNNNGG	2 cut(s)	149, 170
BsmAI	GTCTC	3 cut(s)	30, 331, 894
BsmBI	CGTCTC	2 cut(s)	30, 331
BsmFI	GGGAC	1 cut(s)	832
BsnI	GGCC	5 cut(s)	234, 297, 408, 741, 857
BsoBI	CYCGRG	1 cut(s)	731
Bsp1407I	TGTACA	2 cut(s)	504, 804
Bsp143I	GATC	3 cut(s)	468, 672, 780
Bsp1720I	GCTNAGC	1 cut(s)	516
Bsp19I	CCATGG	2 cut(s)	612, 862
BspANI	GGCC	5 cut(s)	234, 297, 408, 741, 857
BspCNI	CTCAG	2 cut(s)	529, 808
BspFNI	CGCG	4 cut(s)	180, 605, 677, 770
BspLI	GGNNCC	4 cut(s)	235, 274, 421, 740
BspMAI	CTGCAG	1 cut(s)	642
BspPI	GGATC	2 cut(s)	463, 788
BspT107I	GGYRCC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	752
BsrFI	RCCGGY	2 cut(s)	230, 293
BsrGI	TGTACA	2 cut(s)	504, 804
BsrI	ACTGG	2 cut(s)	259, 844
BssAI	RCCGGY	2 cut(s)	230, 293
BssECI	CCNNGG	3 cut(s)	558, 612, 862
BssMI	GATC	3 cut(s)	468, 672, 780
BssNI	GRCGYC	2 cut(s)	174, 273
BssT1I	CCWWGG	3 cut(s)	558, 612, 862
Bst2UI	CCWGG	2 cut(s)	299, 743
Bst4CI	ACNGT	1 cut(s)	703
BstACI	GRCGYC	2 cut(s)	174, 273
BstAUI	TGTACA	2 cut(s)	504, 804
BstC8I	GCNNGC	3 cut(s)	232, 295, 713
BstDEI	CTNAG	2 cut(s)	516, 795
BstDSI	CCRYGG	2 cut(s)	612, 862
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	4 cut(s)	180, 605, 677, 770
BstH2I	RGCGCY	2 cut(s)	276, 369
BstHHI	GCGC	3 cut(s)	275, 368, 391
BstKTI	GATC	3 cut(s)	471, 675, 783
BstMAI	GTCTC	3 cut(s)	30, 331, 894
BstMBI	GATC	3 cut(s)	468, 672, 780
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	6 cut(s)	236, 303, 397, 419, 674, 694
BstNI	CCWGG	2 cut(s)	299, 743
BstNSI	RCATGY	2 cut(s)	439, 454
BstSCI	CCNGG	3 cut(s)	297, 741, 815
BstSFI	CTRYAG	1 cut(s)	638
BstUI	CGCG	4 cut(s)	180, 605, 677, 770
BstV2I	GAAGAC	1 cut(s)	280
BsuRI	GGCC	5 cut(s)	234, 297, 408, 741, 857
BtgI	CCRYGG	2 cut(s)	612, 862
BtgZI	GCGATG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	3 cut(s)	232, 295, 713
CaiI	CAGNNNCTG	2 cut(s)	22, 526
CfoI	GCGC	3 cut(s)	275, 368, 391
Cfr10I	RCCGGY	2 cut(s)	230, 293
Cfr13I	GGNCC	2 cut(s)	233, 739
CseI	GACGC	4 cut(s)	163, 694, 759, 885
Csp6I	GTAC	5 cut(s)	262, 505, 529, 607, 805
CviAII	CATG	8 cut(s)	379, 436, 451, 586, 613, 849, 863, 907
CviQI	GTAC	5 cut(s)	262, 505, 529, 607, 805
DdeI	CTNAG	2 cut(s)	516, 795
DinI	GGCGCC	1 cut(s)	274
DpnI	GATC	3 cut(s)	470, 674, 782
DpnII	GATC	3 cut(s)	468, 672, 780
DraIII	CACNNNGTG	1 cut(s)	703
DriI	GACNNNNNGTC	1 cut(s)	825
EaeI	YGGCCR	2 cut(s)	295, 406
Eam1105I	GACNNNNNGTC	1 cut(s)	825
Eco130I	CCWWGG	3 cut(s)	558, 612, 862
Eco147I	AGGCCT	1 cut(s)	857
Eco88I	CYCGRG	1 cut(s)	731
EcoO109I	RGGNCCY	1 cut(s)	739
EcoRII	CCWGG	2 cut(s)	297, 741
EcoT14I	CCWWGG	3 cut(s)	558, 612, 862
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
ErhI	CCWWGG	3 cut(s)	558, 612, 862
Esp3I	CGTCTC	2 cut(s)	30, 331
FaeI	CATG	8 cut(s)	382, 439, 454, 589, 616, 852, 866, 910
FaqI	GGGAC	1 cut(s)	832
FatI	CATG	8 cut(s)	378, 435, 450, 585, 612, 848, 862, 906
FauI	CCCGC	3 cut(s)	112, 244, 559
Fnu4HI	GCNGC	6 cut(s)	321, 406, 549, 564, 678, 753
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	6 cut(s)	321, 406, 549, 564, 678, 753
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	3 cut(s)	274, 367, 390
GluI	GCNGC	6 cut(s)	321, 406, 549, 564, 678, 753
HaeII	RGCGCY	2 cut(s)	276, 369
HaeIII	GGCC	5 cut(s)	234, 297, 408, 741, 857
HapII	CCGG	5 cut(s)	150, 231, 294, 423, 816
HgaI	GACGC	4 cut(s)	163, 694, 759, 885
HhaI	GCGC	3 cut(s)	275, 368, 391
Hin1I	GRCGYC	2 cut(s)	174, 273
Hin1II	CATG	8 cut(s)	382, 439, 454, 589, 616, 852, 866, 910
Hin6I	GCGC	3 cut(s)	273, 366, 389
HinP1I	GCGC	3 cut(s)	273, 366, 389
HinfI	GANTC	6 cut(s)	89, 146, 206, 354, 444, 523
HpaII	CCGG	5 cut(s)	150, 231, 294, 423, 816
HphI	GGTGA	4 cut(s)	478, 673, 682, 694
Hpy166II	GTNNAC	2 cut(s)	805, 837
Hpy188I	TCNGA	3 cut(s)	191, 419, 798
Hpy188III	TCNNGA	2 cut(s)	143, 334
Hpy8I	GTNNAC	2 cut(s)	805, 837
Hpy99I	CGWCG	2 cut(s)	775, 901
HpyAV	CCTTC	6 cut(s)	103, 123, 145, 370, 847, 868
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4V	TGCA	5 cut(s)	76, 101, 454, 640, 697
HpyF10VI	GCNNNNNNNGC	6 cut(s)	236, 303, 397, 419, 674, 694
HpyF3I	CTNAG	2 cut(s)	516, 795
Hsp92I	GRCGYC	2 cut(s)	174, 273
Hsp92II	CATG	8 cut(s)	382, 439, 454, 589, 616, 852, 866, 910
HspAI	GCGC	3 cut(s)	273, 366, 389
KasI	GGCGCC	1 cut(s)	272
KroI	GCCGGC	2 cut(s)	230, 293
KroNI	GCCGGC	2 cut(s)	232, 295
Kzo9I	GATC	3 cut(s)	468, 672, 780
LmnI	GCTCC	2 cut(s)	419, 749
LweI	GCATC	2 cut(s)	63, 70
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	277, 682
MalI	GATC	3 cut(s)	470, 674, 782
MbiI	CCGCTC	1 cut(s)	752
MboI	GATC	3 cut(s)	468, 672, 780
MboII	GAAGA	4 cut(s)	178, 223, 235, 280
MluI	ACGCGT	1 cut(s)	768
Mly113I	GGCGCC	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	5 cut(s)	34, 320, 326, 450, 482
MroNI	GCCGGC	2 cut(s)	230, 293
MroXI	GAANNNNTTC	1 cut(s)	857
MseI	TTAA	1 cut(s)	882
MslI	CAYNNNNRTG	1 cut(s)	584
MspA1I	CMGCKG	2 cut(s)	430, 711
MspI	CCGG	5 cut(s)	150, 231, 294, 423, 816
MspR9I	CCNGG	3 cut(s)	299, 743, 817
MvaI	CCWGG	2 cut(s)	299, 743
MvnI	CGCG	4 cut(s)	180, 605, 677, 770
MwoI	GCNNNNNNNGC	6 cut(s)	236, 303, 397, 419, 674, 694
NaeI	GCCGGC	2 cut(s)	232, 295
NarI	GGCGCC	1 cut(s)	273
NciI	CCSGG	1 cut(s)	817
NcoI	CCATGG	2 cut(s)	612, 862
NdeII	GATC	3 cut(s)	468, 672, 780
NgoMIV	GCCGGC	2 cut(s)	230, 293
NlaIII	CATG	8 cut(s)	382, 439, 454, 589, 616, 852, 866, 910
NlaIV	GGNNCC	4 cut(s)	235, 274, 421, 740
NmeAIII	GCCGAG	2 cut(s)	249, 354
NmuCI	GTSAC	2 cut(s)	277, 682
NspI	RCATGY	2 cut(s)	439, 454
PceI	AGGCCT	1 cut(s)	857
PciI	ACATGT	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PdiI	GCCGGC	2 cut(s)	232, 295
PdmI	GAANNNNTTC	1 cut(s)	857
PfeI	GAWTC	5 cut(s)	89, 206, 354, 444, 523
Pfl23II	CGTACG	1 cut(s)	606
PfoI	TCCNGGA	1 cut(s)	815
PkrI	GCNGC	6 cut(s)	322, 407, 550, 565, 679, 754
PleI	GAGTC	1 cut(s)	140
PluTI	GGCGCC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	140
PscI	ACATGT	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	297, 741
PspGI	CCWGG	2 cut(s)	297, 741
PspLI	CGTACG	1 cut(s)	606
PspN4I	GGNNCC	4 cut(s)	235, 274, 421, 740
PspPI	GGNCC	2 cut(s)	233, 739
PstI	CTGCAG	1 cut(s)	642
PstNI	CAGNNNCTG	2 cut(s)	22, 526
PvuII	CAGCTG	2 cut(s)	430, 711
RsaI	GTAC	5 cut(s)	263, 506, 530, 608, 806
RsaNI	GTAC	5 cut(s)	262, 505, 529, 607, 805
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	1 cut(s)	882
SatI	GCNGC	6 cut(s)	321, 406, 549, 564, 678, 753
Sau3AI	GATC	3 cut(s)	468, 672, 780
Sau96I	GGNCC	2 cut(s)	233, 739
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	3 cut(s)	299, 743, 817
SfaNI	GCATC	2 cut(s)	63, 70
SfcI	CTRYAG	1 cut(s)	638
SfoI	GGCGCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
SseBI	AGGCCT	1 cut(s)	857
SspDI	GGCGCC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	857
StyD4I	CCNGG	3 cut(s)	297, 741, 815
StyI	CCWWGG	3 cut(s)	558, 612, 862
TaaI	ACNGT	1 cut(s)	703
TaqI	TCGA	3 cut(s)	209, 312, 333
TaqII	GACCGA	1 cut(s)	331
TatI	WGTACW	3 cut(s)	261, 504, 804
TauI	GCSGC	6 cut(s)	323, 408, 551, 566, 680, 755
TfiI	GAWTC	5 cut(s)	89, 206, 354, 444, 523
Tru1I	TTAA	1 cut(s)	882
Tru9I	TTAA	1 cut(s)	882
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	277, 682
Tsp45I	GTSAC	2 cut(s)	277, 682
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	2 cut(s)	546, 612
TspRI	CASTG	1 cut(s)	27
XceI	RCATGY	2 cut(s)	439, 454
XmnI	GAANNNNTTC	1 cut(s)	857
XspI	CTAG	1 cut(s)	86
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.