Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003189

Physical Location & Seq

Genomic Coordinates Reverse (-)

43515709 .. 43517200

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0263600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGTTTAGTTCTGATGAGAGCGCATATAAAGCTTATGCTAAATATGGAGGAAAATCTGGTTTCAATGTGAGAAAACAACGAAAGAAGAGAAACAACAAGGGTTTGGTTGTAAGGTTGCTTTATTGTTGCTCAAAAGAAGGTTACCGAAAGACCAGAACAAAGAGGGAAACATCTTATTCATTACCAGTTACAAGGGTCAGTTGTAAAGCCCATATGAGTTGCTATCGTCAAAGCAACGGAAAATTCCAGATTGTGTCGTTGGAGACAAATCACAATCATGAGTTGATTAAAACACCTATGAAGCATATGTTAAAGATTAATCGAAGTTTCTCTAAAGCTCAAAAAGAACATGCTGATGATGCTGAGATGTCAGGAATTTCAGCAAAAGCAACAGTTGAATTGATGAGTAGAGAAGTTGGGGGACGAGAGAATCTTGGTTTTATGGAAAAGGACTATCGGAATTACATACATCGAAAGCGAAGGGTGCAGATGGAAAAAGGAGATGCTGGAGCTATATTGCAATACTTCCAAAAAATGAAAGAGGATAATTCATCTTCTTTTTATTCAATGCAACTTGATGAGGATGATATGATCACGAATATTTTTTGGGCAGATGAGCGTTCAGATTCTATTCCTATTAGTGACAATTGTGAGCAACAAGAAGTCAATGAATATGAAGTTCCAATGCTTGATTTTGCAACTCAAGAATCCAATCTTAGCGCTGGTACCCAAGTATCAATTTATGGTACAAGTGTAACTTTGCAAAATGGCTTTTCTTTCACTCAAATGCTCCAGGAAATTTCAATGAATCATGCTAATTCTTCACAAAGTAATGAAGAAGGCAAAAAGCAGCTGGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

288

Amino Acids

33.01

Weight (kDa)

8.78

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	13 - 97	1.3e-17	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26590 AT3G26590 AT5G38030
fragaria_vesca	FvH4_4g25500 FvH4_4g25500 FvH4_4g25510
malus_domestica	MD13G1102100.v1.1 MD16G1102700.v1.1
prunus_persica	Prupe.1G243700_v2.0.a1
pyrus_communis	pycom13g08920 pycom13g08930 pycom16g08710 pycom16g08730
rosa_chinensis	RchiOBHm_Chr4g0432851 RchiOBHm_Chr4g0432861
rosa_laevigata	RLG00000006804 RLG00000006805 RLG00000030674
rosa_multiflora	Rmu_co8449711.1_g000001 Rmu_sc0005234.1_g000013
rosa_roxburghii	Rroxscaffold_5G00374290 Rroxscaffold_5G00374300
rosa_rugosa	Rorug04G0263200 Rorug04G0263300 Rorug04G0263400 Rorug04G0263500 Rorug04G0263600
rosa_samantha	Rh4AG317500 Rh4AG317700 Rh4BG325800 Rh4CG340800 Rh4CG340900 Rh4CG341000 Rh4DG320900 Rh4DG321000
rosa_wichuraiana	Rw4G027610 Rw4G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	728
AcsI	RAATTY	3 cut(s)	245, 378, 801
AfaI	GTAC	2 cut(s)	730, 751
AfeI	AGCGCT	1 cut(s)	724
AgsI	TTSAA	4 cut(s)	67, 401, 570, 807
AjnI	CCWGG	1 cut(s)	795
AluBI	AGCT	4 cut(s)	35, 341, 515, 856
AluI	AGCT	4 cut(s)	35, 341, 515, 856
Alw26I	GTCTC	1 cut(s)	260
Aor51HI	AGCGCT	1 cut(s)	724
ApeKI	GCWGC	1 cut(s)	853
ApoI	RAATTY	3 cut(s)	245, 378, 801
AseI	ATTAAT	1 cut(s)	321
Asp718I	GGTACC	1 cut(s)	728
AspLEI	GCGC	2 cut(s)	26, 725
BaeI	ACNNNNGTAYC	6 cut(s)	720, 720, 741, 753, 753, 774
BanI	GGYRCC	1 cut(s)	728
BccI	CCATC	1 cut(s)	487
BciT130I	CCWGG	1 cut(s)	797
BclI	TGATCA	1 cut(s)	594
BcoDI	GTCTC	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	726
BisI	GCNGC	1 cut(s)	854
BlsI	GCNGC	1 cut(s)	855
Bme1390I	CCNGG	1 cut(s)	797
BmiI	GGNNCC	1 cut(s)	730
BmrFI	CCNGG	1 cut(s)	797
BmsI	GCATC	2 cut(s)	352, 496
BpmI	CTGGAG	2 cut(s)	531, 779
BpuEI	CTTGAG	1 cut(s)	690
Bse1I	ACTGG	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	797
BseGI	GGATG	1 cut(s)	592
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	856
BsgI	GTGCAG	1 cut(s)	509
BshNI	GGYRCC	1 cut(s)	728
BslFI	GGGAC	1 cut(s)	438
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	594
BspCNI	CTCAG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	730
BspT107I	GGYRCC	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	797
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	366, 719
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	592
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	2 cut(s)	26, 725
BstKTI	GATC	1 cut(s)	597
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	594
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 362, 487
BstNI	CCWGG	1 cut(s)	797
BstNSI	RCATGY	1 cut(s)	356
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	795
BtsCI	GGATG	1 cut(s)	592
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	2 cut(s)	26, 725
Csp6I	GTAC	2 cut(s)	729, 750
CviAII	CATG	3 cut(s)	281, 353, 815
CviJI	RGCY	6 cut(s)	35, 212, 341, 515, 774, 856
CviKI_1	RGCY	6 cut(s)	35, 212, 341, 515, 774, 856
CviQI	GTAC	2 cut(s)	729, 750
DdeI	CTNAG	2 cut(s)	366, 719
DpnI	GATC	1 cut(s)	596
DpnII	GATC	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco47III	AGCGCT	1 cut(s)	724
Eco91I	GGTNACC	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	795
FaeI	CATG	3 cut(s)	284, 356, 818
FalI	AAGNNNNNCTT	2 cut(s)	745, 777
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	3 cut(s)	280, 352, 814
FauNDI	CATATG	2 cut(s)	216, 309
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	1 cut(s)	854
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	1 cut(s)	854
GlaI	GCGC	2 cut(s)	25, 724
GluI	GCNGC	1 cut(s)	854
GsaI	CCCAGC	1 cut(s)	860
GsuI	CTGGAG	2 cut(s)	531, 779
HaeII	RGCGCY	1 cut(s)	726
HhaI	GCGC	2 cut(s)	26, 725
Hin1II	CATG	3 cut(s)	284, 356, 818
Hin6I	GCGC	2 cut(s)	24, 723
HinP1I	GCGC	2 cut(s)	24, 723
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	4 cut(s)	433, 629, 710, 811
Hpy188I	TCNGA	3 cut(s)	16, 462, 628
Hpy188III	TCNNGA	5 cut(s)	250, 281, 375, 598, 707
HpyAV	CCTTC	3 cut(s)	134, 477, 836
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	490, 523, 574, 701, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 362, 487
HpyF3I	CTNAG	2 cut(s)	366, 719
Hsp92II	CATG	3 cut(s)	284, 356, 818
HspAI	GCGC	2 cut(s)	24, 723
KpnI	GGTACC	1 cut(s)	732
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	594
LmnI	GCTCC	2 cut(s)	512, 798
LweI	GCATC	2 cut(s)	352, 496
MaeIII	GTNAC	4 cut(s)	143, 190, 644, 757
MalI	GATC	1 cut(s)	596
MboI	GATC	1 cut(s)	594
MboII	GAAGA	4 cut(s)	100, 549, 816, 851
MfeI	CAATTG	1 cut(s)	649
MluCI	AATT	9 cut(s)	245, 378, 401, 463, 550, 649, 741, 801, 820
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	4 cut(s)	44, 159, 538, 577
MseI	TTAA	3 cut(s)	291, 314, 321
MslI	CAYNNNNRTG	3 cut(s)	279, 357, 788
MspA1I	CMGCKG	1 cut(s)	856
MspR9I	CCNGG	1 cut(s)	797
MunI	CAATTG	1 cut(s)	649
MvaI	CCWGG	1 cut(s)	797
MwoI	GCNNNNNNNGC	3 cut(s)	32, 362, 487
NdeI	CATATG	2 cut(s)	216, 309
NdeII	GATC	1 cut(s)	594
NlaIII	CATG	3 cut(s)	284, 356, 818
NlaIV	GGNNCC	1 cut(s)	730
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	1 cut(s)	356
PagI	TCATGA	1 cut(s)	280
PfeI	GAWTC	4 cut(s)	433, 629, 710, 811
PfoI	TCCNGGA	1 cut(s)	795
PkrI	GCNGC	1 cut(s)	855
PshBI	ATTAAT	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	795
PspEI	GGTNACC	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	795
PspN4I	GGNNCC	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	856
RsaI	GTAC	2 cut(s)	730, 751
RsaNI	GTAC	2 cut(s)	729, 750
RseI	CAYNNNNRTG	3 cut(s)	279, 357, 788
SaqAI	TTAA	3 cut(s)	291, 314, 321
SatI	GCNGC	1 cut(s)	854
Sau3AI	GATC	1 cut(s)	594
ScrFI	CCNGG	1 cut(s)	797
SetI	ASST	7 cut(s)	37, 119, 145, 301, 343, 517, 858
SfaNI	GCATC	2 cut(s)	352, 496
SmiMI	CAYNNNNRTG	3 cut(s)	279, 357, 788
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
Sse9I	AATT	9 cut(s)	245, 378, 401, 463, 550, 649, 741, 801, 820
SspI	AATATT	1 cut(s)	604
StyD4I	CCNGG	1 cut(s)	795
TaaI	ACNGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	325, 475
TasI	AATT	9 cut(s)	245, 378, 401, 463, 550, 649, 741, 801, 820
TfiI	GAWTC	4 cut(s)	433, 629, 710, 811
Tru1I	TTAA	3 cut(s)	291, 314, 321
Tru9I	TTAA	3 cut(s)	291, 314, 321
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	1 cut(s)	853
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	8 cut(s)	171, 317, 543, 554, 687, 693, 824, 852
TspGWI	ACGGA	1 cut(s)	255
VspI	ATTAAT	1 cut(s)	321
XapI	RAATTY	3 cut(s)	245, 378, 801
XceI	RCATGY	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.