Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003189

Physical Location & Seq

Genomic Coordinates Reverse (-)

5963078 .. 5964135

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGGATAACAAGCAGCCGCTTCTGCCGCCGACGGACGAGTTTGATCATCATCAGCACCTGCACGACCACCTAGAGTCCCTCCCTCCGCCGGCAAACCCTTCTTTTACTTCCACCGCCTCCTTCACTCCCGATGCCGACGACATCTCTCCCATCGTCAGTATCCGCGACTTCTTCCTCGAGTTCTTCAAAGAAGCCAAAAAGCTATGGTTTCTCGCCGGCCCCGCCATCTTCACCTCCATATGCCAGTATTCCCTCGGCGCAATCACTCAAGTCTTCGCCGGCCAAGTCGGCACCTTAGACCTTGCCGCCGTCTCCATTGAAAACTCTGTCATCGCCGGCTTCTCCTTCGGCGTTATGCTTGGAATGGGGAGTGCTCTCGAGACGCTATGTGGGCAGGCATTTGGAGCAGGGCAGCTGGACATGTTAGGAATCTACATGCAGAGGTCGTGGGTGATCCTCAACTCCACTGCCGTACTCCTCTCCTTTCTCTATATCTTCGCTCAGCCACTTCTCAAAGCGATAGGGCAGACCACCGACATATCGAAGGCGGCAGGAGTGTTCGCGATATGGATGATACCGCAGTTATTCGCGTACGCCATGAATTTCCCGATAGCCAAGTTCTTGCAGTCGCAGAGCAAGATGATGGTCATGGCGGTGATATCGGCGGTGGCTTTGGTCCTGCATACGTTGTTCAGCTGGCTTTTGATGTTGAAGGTTGGGTGGGGACTGGTGGGTGCCGCAGTCGTGCTCAACGCGTCCTGGTGGTTCATAGTTTTAGCTCAGCTGGGTTATATATTTTCTGGGACATGTGGTCAAGCTTGGGTTGGATTCTCATGGAAGGCGTTTCAGAATCTTTGGGCTTTTGTTAAGTTGTCTCTCGCTTCCGCAATCATGCTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0015238 GO:0015893 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

302

Amino Acids

32.94

Weight (kDa)

5.8

Isoelectric Point (pI)

27.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26590 AT3G26590 AT5G38030
fragaria_vesca	FvH4_4g25500 FvH4_4g25500 FvH4_4g25510
malus_domestica	MD13G1102100.v1.1 MD16G1102700.v1.1
prunus_persica	Prupe.1G243700_v2.0.a1
pyrus_communis	pycom13g08920 pycom13g08930 pycom16g08710 pycom16g08730
rosa_chinensis	RchiOBHm_Chr4g0432851 RchiOBHm_Chr4g0432861
rosa_laevigata	RLG00000006804 RLG00000006805 RLG00000030674
rosa_multiflora	Rmu_co8449711.1_g000001 Rmu_sc0005234.1_g000013
rosa_roxburghii	Rroxscaffold_5G00374290 Rroxscaffold_5G00374300
rosa_rugosa	Rorug04G0263200 Rorug04G0263300 Rorug04G0263400 Rorug04G0263500 Rorug04G0263600
rosa_samantha	Rh4AG317500 Rh4AG317700 Rh4BG325800 Rh4CG340800 Rh4CG340900 Rh4CG341000 Rh4DG320900 Rh4DG321000
rosa_wichuraiana	Rw4G027610 Rw4G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	69
AccB1I	GGYRCC	2 cut(s)	293, 737
AccII	CGCG	4 cut(s)	168, 566, 593, 758
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	604
AfaI	GTAC	2 cut(s)	477, 596
AfiI	CCNNNNNNNGG	1 cut(s)	91
AflIII	ACRYGT	3 cut(s)	423, 756, 809
AgsI	TTSAA	3 cut(s)	190, 323, 715
AhdI	GACNNNNNGTC	1 cut(s)	813
AjnI	CCWGG	1 cut(s)	761
AluBI	AGCT	6 cut(s)	205, 418, 699, 782, 787, 821
AluI	AGCT	6 cut(s)	205, 418, 699, 782, 787, 821
Alw21I	GWGCWC	2 cut(s)	379, 753
Alw26I	GTCTC	3 cut(s)	319, 377, 882
AlwI	GGATC	1 cut(s)	451
AlwNI	CAGNNNCTG	1 cut(s)	61
Ama87I	CYCGRG	2 cut(s)	179, 380
AoxI	GGCC	2 cut(s)	220, 283
ApeKI	GCWGC	2 cut(s)	16, 415
ApoI	RAATTY	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	221, 679
AsuHPI	GGTGA	3 cut(s)	226, 466, 670
AvaI	CYCGRG	2 cut(s)	179, 380
AvaII	GGWCC	1 cut(s)	679
BaeI	ACNNNNGTAYC	2 cut(s)	569, 602
BanI	GGYRCC	2 cut(s)	293, 737
BbsI	GAAGAC	1 cut(s)	268
Bbv12I	GWGCWC	2 cut(s)	379, 753
BbvI	GCAGC	2 cut(s)	28, 427
BccI	CCATC	3 cut(s)	161, 236, 640
BceAI	ACGGC	2 cut(s)	296, 458
BciT130I	CCWGG	1 cut(s)	763
BciVI	GTATCC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	319, 377, 882
BfaI	CTAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	7 cut(s)	17, 20, 29, 309, 416, 552, 741
BlpI	GCTNAGC	2 cut(s)	504, 783
BlsI	GCNGC	7 cut(s)	18, 21, 30, 310, 417, 553, 742
Bme1390I	CCNGG	1 cut(s)	763
Bme18I	GGWCC	1 cut(s)	679
BmeRI	GACNNNNNGTC	1 cut(s)	813
BmeT110I	CYCGRG	2 cut(s)	179, 380
BmgT120I	GGNCC	2 cut(s)	221, 679
BmiI	GGNNCC	3 cut(s)	223, 295, 739
BmrFI	CCNGG	1 cut(s)	763
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	268
Bpu1102I	GCTNAGC	2 cut(s)	504, 783
BpuEI	CTTGAG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	4 cut(s)	91, 218, 281, 338
Bse1I	ACTGG	2 cut(s)	247, 735
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	763
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	579
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	518, 797
BseNI	ACTGG	2 cut(s)	247, 735
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	28, 427
BseYI	CCCAGC	1 cut(s)	787
BsgI	GTGCAG	1 cut(s)	47
Bsh1236I	CGCG	4 cut(s)	168, 566, 593, 758
BshFI	GGCC	2 cut(s)	222, 285
BshNI	GGYRCC	2 cut(s)	293, 737
BsiHKAI	GWGCWC	2 cut(s)	379, 753
BsiHKCI	CYCGRG	2 cut(s)	179, 380
BsiSI	CCGG	4 cut(s)	92, 219, 282, 339
BsiWI	CGTACG	1 cut(s)	594
BslFI	GGGAC	3 cut(s)	64, 741, 820
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	3 cut(s)	319, 377, 882
BsmBI	CGTCTC	2 cut(s)	319, 377
BsmFI	GGGAC	3 cut(s)	64, 741, 820
BsnI	GGCC	2 cut(s)	222, 285
BsoBI	CYCGRG	2 cut(s)	179, 380
Bsp1286I	GDGCHC	2 cut(s)	379, 753
Bsp143I	GATC	2 cut(s)	46, 456
Bsp1720I	GCTNAGC	2 cut(s)	504, 783
Bsp68I	TCGCGA	1 cut(s)	566
BspANI	GGCC	2 cut(s)	222, 285
BspCNI	CTCAG	2 cut(s)	517, 796
BspFNI	CGCG	4 cut(s)	168, 566, 593, 758
BspLI	GGNNCC	3 cut(s)	223, 295, 739
BspMI	ACCTGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	451
BspT107I	GGYRCC	2 cut(s)	293, 737
BsrFI	RCCGGY	4 cut(s)	91, 218, 281, 338
BsrI	ACTGG	2 cut(s)	247, 735
BssAI	RCCGGY	4 cut(s)	91, 218, 281, 338
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	46, 456
Bst2UI	CCWGG	1 cut(s)	763
BstC8I	GCNNGC	6 cut(s)	93, 220, 283, 340, 399, 701
BstDEI	CTNAG	3 cut(s)	298, 504, 783
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	4 cut(s)	168, 566, 593, 758
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	2 cut(s)	49, 459
BstMAI	GTCTC	3 cut(s)	319, 377, 882
BstMBI	GATC	2 cut(s)	46, 456
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 28, 224, 291, 394, 407
BstNI	CCWGG	1 cut(s)	763
BstNSI	RCATGY	3 cut(s)	427, 442, 813
BstSCI	CCNGG	1 cut(s)	761
BstUI	CGCG	4 cut(s)	168, 566, 593, 758
BstV1I	GCAGC	2 cut(s)	28, 427
BstV2I	GAAGAC	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	222, 285
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	579
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
BtuMI	TCGCGA	1 cut(s)	566
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	6 cut(s)	93, 220, 283, 340, 399, 701
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	4 cut(s)	91, 218, 281, 338
Cfr13I	GGNCC	2 cut(s)	221, 679
CseI	GACGC	2 cut(s)	394, 747
Csp6I	GTAC	2 cut(s)	476, 595
CviAII	CATG	7 cut(s)	424, 439, 601, 652, 810, 837, 895
CviQI	GTAC	2 cut(s)	476, 595
DdeI	CTNAG	3 cut(s)	298, 504, 783
DpnI	GATC	2 cut(s)	48, 458
DpnII	GATC	2 cut(s)	46, 456
DriI	GACNNNNNGTC	1 cut(s)	813
EaeI	YGGCCR	1 cut(s)	283
Eam1105I	GACNNNNNGTC	1 cut(s)	813
EciI	GGCGGA	2 cut(s)	20, 78
Eco32I	GATATC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	679
Eco88I	CYCGRG	2 cut(s)	179, 380
EcoRII	CCWGG	1 cut(s)	761
EcoRV	GATATC	1 cut(s)	663
Esp3I	CGTCTC	2 cut(s)	319, 377
FaeI	CATG	7 cut(s)	427, 442, 604, 655, 813, 840, 898
FaqI	GGGAC	3 cut(s)	64, 741, 820
FatI	CATG	7 cut(s)	423, 438, 600, 651, 809, 836, 894
FauI	CCCGC	1 cut(s)	232
FauNDI	CATATG	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	7 cut(s)	17, 20, 29, 309, 416, 552, 741
FokI	GGATG	1 cut(s)	586
Fsp4HI	GCNGC	7 cut(s)	17, 20, 29, 309, 416, 552, 741
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	7 cut(s)	17, 20, 29, 309, 416, 552, 741
GsaI	CCCAGC	1 cut(s)	791
HaeIII	GGCC	2 cut(s)	222, 285
HapII	CCGG	4 cut(s)	92, 219, 282, 339
HgaI	GACGC	2 cut(s)	394, 747
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	7 cut(s)	427, 442, 604, 655, 813, 840, 898
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	4 cut(s)	77, 432, 831, 853
HpaII	CCGG	4 cut(s)	92, 219, 282, 339
HphI	GGTGA	3 cut(s)	226, 466, 670
Hpy188I	TCNGA	1 cut(s)	852
Hpy188III	TCNNGA	5 cut(s)	131, 380, 382, 565, 610
Hpy99I	CGWCG	2 cut(s)	37, 143
HpyAV	CCTTC	6 cut(s)	111, 133, 358, 541, 709, 835
HpyCH4IV	ACGT	1 cut(s)	689
HpyCH4V	TGCA	4 cut(s)	64, 442, 628, 685
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 28, 224, 291, 394, 407
HpyF3I	CTNAG	3 cut(s)	298, 504, 783
HpySE526I	ACGT	1 cut(s)	689
Hsp92II	CATG	7 cut(s)	427, 442, 604, 655, 813, 840, 898
HspAI	GCGC	1 cut(s)	261
KroI	GCCGGC	4 cut(s)	91, 218, 281, 338
KroNI	GCCGGC	4 cut(s)	93, 220, 283, 340
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 456
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	2 cut(s)	28, 427
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	689
MalI	GATC	2 cut(s)	48, 458
MboI	GATC	2 cut(s)	46, 456
MboII	GAAGA	5 cut(s)	166, 178, 223, 268, 490
MhlI	GDGCHC	2 cut(s)	379, 753
MluCI	AATT	1 cut(s)	604
MluI	ACGCGT	1 cut(s)	756
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	808
MnlI	CCTC	9 cut(s)	92, 96, 130, 188, 247, 266, 438, 470, 491
MroNI	GCCGGC	4 cut(s)	91, 218, 281, 338
MseI	TTAA	1 cut(s)	870
MslI	CAYNNNNRTG	1 cut(s)	656
MspA1I	CMGCKG	3 cut(s)	418, 699, 787
MspI	CCGG	4 cut(s)	92, 219, 282, 339
MspR9I	CCNGG	1 cut(s)	763
MvaI	CCWGG	1 cut(s)	763
MvnI	CGCG	4 cut(s)	168, 566, 593, 758
MwoI	GCNNNNNNNGC	6 cut(s)	25, 28, 224, 291, 394, 407
NaeI	GCCGGC	4 cut(s)	93, 220, 283, 340
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	2 cut(s)	46, 456
NgoMIV	GCCGGC	4 cut(s)	91, 218, 281, 338
NlaIII	CATG	7 cut(s)	427, 442, 604, 655, 813, 840, 898
NlaIV	GGNNCC	3 cut(s)	223, 295, 739
NmeAIII	GCCGAG	1 cut(s)	237
NruI	TCGCGA	1 cut(s)	566
NspI	RCATGY	3 cut(s)	427, 442, 813
PaeR7I	CTCGAG	2 cut(s)	179, 380
PaqCI	CACCTGC	1 cut(s)	69
PciI	ACATGT	2 cut(s)	423, 809
PdiI	GCCGGC	4 cut(s)	93, 220, 283, 340
PfeI	GAWTC	3 cut(s)	432, 831, 853
Pfl23II	CGTACG	1 cut(s)	594
PkrI	GCNGC	7 cut(s)	18, 21, 30, 310, 417, 553, 742
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PscI	ACATGT	2 cut(s)	423, 809
Psp6I	CCWGG	1 cut(s)	761
PspFI	CCCAGC	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	761
PspLI	CGTACG	1 cut(s)	594
PspN4I	GGNNCC	3 cut(s)	223, 295, 739
PspPI	GGNCC	2 cut(s)	221, 679
PspXI	VCTCGAGB	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	61
PvuII	CAGCTG	3 cut(s)	418, 699, 787
RruI	TCGCGA	1 cut(s)	566
RsaI	GTAC	2 cut(s)	477, 596
RsaNI	GTAC	2 cut(s)	476, 595
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	1 cut(s)	870
SatI	GCNGC	7 cut(s)	17, 20, 29, 309, 416, 552, 741
Sau3AI	GATC	2 cut(s)	46, 456
Sau96I	GGNCC	2 cut(s)	221, 679
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	763
SduI	GDGCHC	2 cut(s)	379, 753
SfaNI	GCATC	1 cut(s)	124
Sfr274I	CTCGAG	2 cut(s)	179, 380
SinI	GGWCC	1 cut(s)	679
SlaI	CTCGAG	2 cut(s)	179, 380
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	3 cut(s)	179, 270, 380
SmoI	CTYRAG	3 cut(s)	179, 270, 380
Sse9I	AATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	761
TaiI	ACGT	1 cut(s)	692
TaqI	TCGA	3 cut(s)	180, 381, 545
TasI	AATT	1 cut(s)	604
TauI	GCSGC	5 cut(s)	22, 31, 311, 554, 743
TfiI	GAWTC	3 cut(s)	432, 831, 853
Tru1I	TTAA	1 cut(s)	870
Tru9I	TTAA	1 cut(s)	870
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	2 cut(s)	16, 415
TspDTI	ATGAA	2 cut(s)	617, 760
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	679
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	3 cut(s)	427, 442, 813
XhoI	CTCGAG	2 cut(s)	179, 380
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.