Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Forward (+)

16789624 .. 16791042

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGTCTCTGTCGTGTCTCCCGATTTGCGGACTTTCATCTTCCGCTTCACTCTACACCAAGGCCCGACTACTTTCTTCTTCTTCTTCTTCCCCGTCGCCGCTTCCTCTAGCCTATCCTCTACAAAACCCTAAGAAGCTATGTAGAAAGATTGAGAGAGTAATTTGCAGAGCGGAGTTTTCACAGGACGCACCACTCGTAACAGCAATTGGTGCGTGTATCCTAAGTTCATTTGTTTTTCCGGTGGCGAAACGAGTCAACGATGAGGAAGAAGAAGAAGAAAACTCAGCGATTGTGTCAACAGATATGAGATTAGCCGCCATGGGAATCATCAGCTTCATACCTTACTTCAATTGGCTGAGTTGGGTGTTTGCTTGGCTTGACACTGGAAAATCTCGTTATGCTGTTTATGCTCTTGTTTATCTTGTTCCTTATTTGAGTTCAAATCTGTCTATTTCTCCAGAAGAGAGCTGGTTACCAATTACAAGCATTGTCTTGGGCATTATTCATGTTCAGCTTGAAGCAAGCATCGCAAATGGGGATGTTGAGACACTTGCATTCTTCAGAAACACATCTGATGACGATTTTTCATCTAAGAAAAGAATCCATTTTAAGAAACATTTCAAGGGAAAAAACAGTGACGATGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.07

Weight (kDa)

5.95

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AciI	CCGC	5 cut(s)	30, 45, 101, 173, 318
AcuI	CTGAAG	1 cut(s)	547
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	352, 444, 521, 625
AluBI	AGCT	4 cut(s)	139, 336, 471, 517
AluI	AGCT	4 cut(s)	139, 336, 471, 517
Alw26I	GTCTC	3 cut(s)	12, 23, 542
AoxI	GGCC	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	620
AspS9I	GGNCC	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	3 cut(s)	12, 23, 542
BfaI	CTAG	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	101, 318
BlsI	GCNGC	2 cut(s)	102, 319
BmgT120I	GGNCC	1 cut(s)	64
BmsI	GCATC	1 cut(s)	537
BpmI	CTGGAG	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	60, 321
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	60, 321
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	300, 350
BseNI	ACTGG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	3 cut(s)	12, 23, 542
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	557
BsnI	GGCC	1 cut(s)	65
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	5 cut(s)	30, 45, 101, 173, 318
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	299, 351
BsrBI	CCGCTC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	60, 321
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	60, 321
Bst4CI	ACNGT	1 cut(s)	638
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	5 cut(s)	132, 224, 286, 359, 594
BstDSI	CCRYGG	1 cut(s)	321
BstEII	GGTNACC	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	547
BstMAI	GTCTC	3 cut(s)	12, 23, 542
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 410, 530
BstPI	GGTNACC	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	384, 643
Cac8I	GCNNGC	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	197
CviAII	CATG	2 cut(s)	322, 509
CviJI	RGCY	9 cut(s)	65, 113, 139, 317, 336, 358, 379, 471, 517
CviKI_1	RGCY	9 cut(s)	65, 113, 139, 317, 336, 358, 379, 471, 517
DdeI	CTNAG	5 cut(s)	132, 224, 286, 359, 594
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	2 cut(s)	60, 321
Eco57I	CTGAAG	1 cut(s)	547
Eco91I	GGTNACC	1 cut(s)	474
EcoO65I	GGTNACC	1 cut(s)	474
EcoT14I	CCWWGG	2 cut(s)	60, 321
ErhI	CCWWGG	2 cut(s)	60, 321
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	325, 512
FaiI	YATR	7 cut(s)	142, 308, 323, 341, 402, 411, 510
FatI	CATG	2 cut(s)	321, 508
Fnu4HI	GCNGC	2 cut(s)	101, 318
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	2 cut(s)	101, 318
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	2 cut(s)	101, 318
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	325, 512
HincII	GTYRAC	2 cut(s)	259, 300
HindII	GTYRAC	2 cut(s)	259, 300
HinfI	GANTC	3 cut(s)	255, 327, 603
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	259, 300
Hpy188I	TCNGA	2 cut(s)	566, 577
Hpy188III	TCNNGA	2 cut(s)	22, 461
Hpy8I	GTNNAC	2 cut(s)	259, 300
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	638
HpyCH4V	TGCA	2 cut(s)	168, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 410, 530
HpyF3I	CTNAG	5 cut(s)	132, 224, 286, 359, 594
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	325, 512
LpnPI	CCDG	5 cut(s)	170, 255, 372, 457, 474
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	3 cut(s)	199, 474, 638
MbiI	CCGCTC	1 cut(s)	173
MfeI	CAATTG	2 cut(s)	207, 352
MluCI	AATT	5 cut(s)	162, 207, 352, 480, 649
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	3 cut(s)	117, 129, 259
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	2 cut(s)	612, 652
MspI	CCGG	1 cut(s)	242
MunI	CAATTG	2 cut(s)	207, 352
Mva1269I	GAATGC	1 cut(s)	557
MwoI	GCNNNNNNNGC	3 cut(s)	212, 410, 530
NcoI	CCATGG	1 cut(s)	321
NlaIII	CATG	2 cut(s)	325, 512
NmuCI	GTSAC	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 195
PctI	GAATGC	1 cut(s)	557
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	327, 603
PkrI	GCNGC	2 cut(s)	102, 319
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspEI	GGTNACC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	64
PsrI	GAACNNNNNNTAC	2 cut(s)	211, 243
SaqAI	TTAA	2 cut(s)	612, 652
SatI	GCNGC	2 cut(s)	101, 318
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	264
SetI	ASST	5 cut(s)	141, 338, 346, 473, 519
SfaNI	GCATC	1 cut(s)	537
Sse9I	AATT	5 cut(s)	162, 207, 352, 480, 649
SsiI	CCGC	5 cut(s)	30, 45, 101, 173, 318
SspMI	CTAG	1 cut(s)	110
StyI	CCWWGG	2 cut(s)	60, 321
TaaI	ACNGT	1 cut(s)	638
TasI	AATT	5 cut(s)	162, 207, 352, 480, 649
TauI	GCSGC	2 cut(s)	103, 320
TfiI	GAWTC	2 cut(s)	327, 603
Tru1I	TTAA	2 cut(s)	612, 652
Tru9I	TTAA	2 cut(s)	612, 652
TscAI	CASTG	2 cut(s)	391, 643
TseFI	GTSAC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	638
TspDTI	ATGAA	5 cut(s)	27, 219, 328, 497, 579
TspRI	CASTG	2 cut(s)	391, 643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.