Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006894

Physical Location & Seq

Genomic Coordinates Reverse (-)

5830514 .. 5842613

Gene Structure 12100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAGGACCACATCTCCATTTGCAGCCTCGATTGCACGATCAGCCGAGCTCTCGCACGACGCGCCTTTTGCCGCCGCCAGCGGAGCGTGCATGCTCTCGTCGCTGGTGCTTCCGCCGGTCACTGCTCCGGCCGACGATCCTGATGCTGGTTCCGGTATTGATTCACCGCTGCCGGGTTCGCAGTCATGGGGGTTGTTAGCTTCATTCCCTACTTCAATTGGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

7.49

Weight (kDa)

4.17

Isoelectric Point (pI)

70.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41960 AT5G41960
fragaria_vesca	FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000 FvH4_5g11000
malus_domestica	MD06G1117700.v1.1 MD14G1125100.v1.1 MD16G1274000.v1.1
prunus_persica	Prupe.5G128800_v2.0.a1 Prupe.5G128800_v2.0.a1
pyrus_communis	pycom06g10940 pycom14g11060
rosa_chinensis	RchiOBHm_Chr7g0186811
rosa_laevigata	RLG00000004813
rosa_multiflora	Rmu_sc0035054.1_g000002 Rmu_ssc0000024.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267800
rosa_rugosa	Rorug06G0476900
rosa_samantha	Rh7AG063600 Rh7BG080100 Rh7BG080900 Rh7CG083900 Rh7DG084800
rosa_wichuraiana	Rw7G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AciI	CCGC	5 cut(s)	72, 75, 81, 113, 167
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	146, 173
AgsI	TTSAA	1 cut(s)	216
AluBI	AGCT	2 cut(s)	49, 200
AluI	AGCT	2 cut(s)	49, 200
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	23, 169
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	35, 156
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BcnI	CCSGG	1 cut(s)	174
BisI	GCNGC	4 cut(s)	24, 72, 75, 170
BlsI	GCNGC	4 cut(s)	25, 73, 76, 171
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 173
Bse118I	RCCGGY	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	146, 173
BseX3I	CGGCCG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	35, 156
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	4 cut(s)	116, 128, 153, 173
BslI	CCNNNNNNNGG	2 cut(s)	146, 173
BsnI	GGCC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	38, 136
BspACI	CCGC	5 cut(s)	72, 75, 81, 113, 167
BspANI	GGCC	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	115
BssMI	GATC	2 cut(s)	38, 136
BstC8I	GCNNGC	3 cut(s)	79, 88, 92
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	41, 139
BstMBI	GATC	2 cut(s)	38, 136
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	8 cut(s)	32, 41, 61, 68, 83, 87, 100, 178
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	35, 156
BstZI	CGGCCG	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	3 cut(s)	79, 88, 92
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	1 cut(s)	68
CviAII	CATG	2 cut(s)	91, 186
CviJI	RGCY	6 cut(s)	26, 44, 49, 131, 200, 222
CviKI_1	RGCY	6 cut(s)	26, 44, 49, 131, 200, 222
DpnI	GATC	2 cut(s)	40, 138
DpnII	GATC	2 cut(s)	38, 136
EaeI	YGGCCR	1 cut(s)	129
EagI	CGGCCG	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	6
Eco52I	CGGCCG	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	2 cut(s)	94, 189
FaiI	YATR	2 cut(s)	92, 187
FatI	CATG	2 cut(s)	90, 185
Fnu4HI	GCNGC	4 cut(s)	24, 72, 75, 170
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	4 cut(s)	24, 72, 75, 170
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	4 cut(s)	24, 72, 75, 170
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	4 cut(s)	116, 128, 153, 173
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	94, 189
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	4 cut(s)	116, 128, 153, 173
HphI	GGTGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	140
Hpy99I	CGWCG	3 cut(s)	62, 103, 137
HpyCH4V	TGCA	3 cut(s)	23, 35, 90
HpyF10VI	GCNNNNNNNGC	8 cut(s)	32, 41, 61, 68, 83, 87, 100, 178
Hsp92II	CATG	2 cut(s)	94, 189
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	38, 136
LmnI	GCTCC	2 cut(s)	83, 130
LpnPI	CCDG	9 cut(s)	89, 91, 129, 132, 141, 153, 166, 186, 208
Lsp1109I	GCAGC	2 cut(s)	35, 156
LweI	GCATC	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	40, 138
MboI	GATC	2 cut(s)	38, 136
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	1 cut(s)	37
MspA1I	CMGCKG	2 cut(s)	81, 169
MspI	CCGG	4 cut(s)	116, 128, 153, 173
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	8 cut(s)	32, 41, 61, 68, 83, 87, 100, 178
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	38, 136
NlaIII	CATG	2 cut(s)	94, 189
NlaIV	GGNNCC	1 cut(s)	151
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	25, 73, 76, 171
Psp124BI	GAGCTC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	6
SacI	GAGCTC	1 cut(s)	51
SatI	GCNGC	4 cut(s)	24, 72, 75, 170
Sau3AI	GATC	2 cut(s)	38, 136
Sau96I	GGNCC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	2 cut(s)	51, 202
SfaNI	GCATC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	6
SphI	GCATGC	1 cut(s)	94
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	5 cut(s)	72, 75, 81, 113, 167
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	172
TaqI	TCGA	1 cut(s)	29
TasI	AATT	1 cut(s)	216
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	1 cut(s)	161
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	23, 169
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.